mRNA_Ecto-sp13_S_contig18736.5897.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18736.5897.1
Unique NamemRNA_Ecto-sp13_S_contig18736.5897.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18736.5897.1 vs. uniprot
Match: D8LDZ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDZ5_ECTSI)

HSP 1 Score: 532 bits (1371), Expect = 1.110e-186
Identity = 276/294 (93.88%), Postives = 282/294 (95.92%), Query Frame = 1 
Query:    1 RYSGLTDDRSACVFASEVAFLLKKERVDGGRHPASFRFSFVLPENLTPTFRGVGVRYAYAVTVRVRRALPPPPAAGRLLGLVRRRPAAGSSASAGFSTTDVHVPFTVLSRGPPAFDGVGGTADGIGDGGVCGRVAFAELEAERQSGDAFEMEAVRAKAGGLVSGTRAVTWNMQGRMIDDGYGSIGASALLLGEGDGGAXXXXXXXMVYSIRSGDHRIGSFILHKAEFCAGDIVLGNFDFSGASTRCLQVCACLEVCEENQNAFPRDAASSAPGRPKPQPDVRSTCHKRVVDSCK 882
            RYSGLTDDRSACVFASEVA LLKKERVDGGRHPASFRFSFVLPENLTPTFRGVGVRYAYAVTVRVRRALPPPPAAGRLLGLVRRRPAAGSSASAGFSTTDVHV FTVLSRGPPAFDGVGGTADGIGDGG  GRVAFAELEAERQS DAFE+EA RAKAGGLVSGTRAVTWNMQGRMIDDG+GSIGASALLLGEGDGGA  XXXXXMVYSIRSGDHRIGSFILHKAEFCAGDIVLGNFDFSGASTRCLQVCACLEVCEENQNAF  D+ASSAPG+PKP P+ R+TCHKRVVDSCK
Sbjct:  121 RYSGLTDDRSACVFASEVAVLLKKERVDGGRHPASFRFSFVLPENLTPTFRGVGVRYAYAVTVRVRRALPPPPAAGRLLGLVRRRPAAGSSASAGFSTTDVHVSFTVLSRGPPAFDGVGGTADGIGDGGGWGRVAFAELEAERQSADAFEVEADRAKAGGLVSGTRAVTWNMQGRMIDDGFGSIGASALLLGEGDGGAEDXXXXXMVYSIRSGDHRIGSFILHKAEFCAGDIVLGNFDFSGASTRCLQVCACLEVCEENQNAFTGDSASSAPGKPKPSPNARNTCHKRVVDSCK 414
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BLAST of mRNA_Ecto-sp13_S_contig18736.5897.1 vs. uniprot
Match: A0A6H5KF53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF53_9PHAE)

HSP 1 Score: 277 bits (708), Expect = 4.310e-89
Identity = 149/173 (86.13%), Postives = 151/173 (87.28%), Query Frame = 1 
Query:    1 RYSGLTDDRSACVFASEVAFLLKKERVDGGRHPASFRFSFVLPENLTPTFRGVGVRYAYAVTVRVRRALPPPPAAGRLLGLVRRRPAAGSSASAGFSTTDVHVPFTVLSRGPPAFDGVGGTADGIGDGGVCGRVAFAELEAERQSGDAFEMEAVRAKAGGLVSGTRAVTWNMQ 519
            RYSGLTDDRSACVFASEVA LLK+ERVDGGRHP SFRFSFVLPENLTPTFRGVGVRYAYAVTVRVRR+LPPPPAAGRLLGLVRRRPAAGSSASAGFSTTDVHV FT             GTADGIGDG   GRVAF ELEAERQSGDAFEMEA RAK GGLVSGTRAVTWNMQ
Sbjct:  118 RYSGLTDDRSACVFASEVAVLLKQERVDGGRHPTSFRFSFVLPENLTPTFRGVGVRYAYAVTVRVRRSLPPPPAAGRLLGLVRRRPAAGSSASAGFSTTDVHVSFT-------------GTADGIGDGVSWGRVAFTELEAERQSGDAFEMEADRAKGGGLVSGTRAVTWNMQ 277
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BLAST of mRNA_Ecto-sp13_S_contig18736.5897.1 vs. uniprot
Match: A0A6H5L4W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4W5_9PHAE)

HSP 1 Score: 226 bits (575), Expect = 8.430e-70
Identity = 119/138 (86.23%), Postives = 125/138 (90.58%), Query Frame = 1 
Query:  469 KAGGLVSGTRAVTWNMQGRMIDDGYGSIGASALLLGEGDGGAXXXXXXXMVYSIRSGDHRIGSFILHKAEFCAGDIVLGNFDFSGASTRCLQVCACLEVCEENQNAFPRDAASSAPGRPKPQPDVRSTCHKRVVDSCK 882
            +AG   S  R     ++GRMIDDG+GS+GASALLLGEGDGGA XXXXXXMV+SIRSGDHRIGSFILHKAEFCAGDIVLGNFDFSGASTRCLQVCACLEVCEENQNAFP DAASSAPGRPKP PDVRSTCHKRVVDSCK
Sbjct:   13 RAGAGRSPPRHDIRKIKGRMIDDGFGSMGASALLLGEGDGGAGXXXXXXMVFSIRSGDHRIGSFILHKAEFCAGDIVLGNFDFSGASTRCLQVCACLEVCEENQNAFPGDAASSAPGRPKPPPDVRSTCHKRVVDSCK 150
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18736.5897.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LDZ5_ECTSI1.110e-18693.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KF53_9PHAE4.310e-8986.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4W5_9PHAE8.430e-7086.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18736contigEcto-sp13_S_contig18736:515..3138 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score534.6
Seed ortholog evalue2.9e-149
Seed eggNOG ortholog2880.D8LDZ5
Preferred nameRGP1
Model size903
KEGG koko:K20477
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0003674,GO:0005085,GO:0005088,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005802,GO:0005829,GO:0005886,GO:0006810,GO:0008150,GO:0009892,GO:0009894,GO:0009895,GO:0009966,GO:0009967,GO:0010605,GO:0010646,GO:0010647,GO:0012505,GO:0016020,GO:0016192,GO:0016197,GO:0016482,GO:0017016,GO:0017112,GO:0017137,GO:0019222,GO:0019899,GO:0023051,GO:0023056,GO:0031090,GO:0031267,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031984,GO:0032006,GO:0032008,GO:0032045,GO:0032268,GO:0032269,GO:0032588,GO:0032991,GO:0034066,GO:0042147,GO:0042176,GO:0042177,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043547,GO:0044093,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050790,GO:0050794,GO:0051020,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051336,GO:0051345,GO:0051641,GO:0051649,GO:0060255,GO:0065007,GO:0065009,GO:0071944,GO:0080090,GO:0098588,GO:0098772,GO:0098791,GO:1902531,GO:1902533,GO:1903362,GO:1903363,GO:1903939,GO:1904515
Exons4
EggNOG free text desc.Rab guanyl-nucleotide exchange factor activity
EggNOG OGsKOG4469@1,KOG4469@2759
Ec32 ortholog descriptionReduced growth phenotype protein 1
Ec32 orthologEc-23_003190.1
Cds size903
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462959.8048465-CDS-Ecto-sp13_S_contig18736:514..6671681462959.8048465-CDS-Ecto-sp13_S_contig18736:514..667Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18736 515..667 +
1681462959.816612-CDS-Ecto-sp13_S_contig18736:909..12751681462959.816612-CDS-Ecto-sp13_S_contig18736:909..1275Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18736 910..1275 +
1681462959.824753-CDS-Ecto-sp13_S_contig18736:1987..22121681462959.824753-CDS-Ecto-sp13_S_contig18736:1987..2212Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18736 1988..2212 +
1681462959.8328552-CDS-Ecto-sp13_S_contig18736:2979..31381681462959.8328552-CDS-Ecto-sp13_S_contig18736:2979..3138Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18736 2980..3138 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18736.5897.1prot_Ecto-sp13_S_contig18736.5897.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18736 515..3138 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18736.5897.1

>prot_Ecto-sp13_S_contig18736.5897.1 ID=prot_Ecto-sp13_S_contig18736.5897.1|Name=mRNA_Ecto-sp13_S_contig18736.5897.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=301bp
RYSGLTDDRSACVFASEVAFLLKKERVDGGRHPASFRFSFVLPENLTPTF
RGVGVRYAYAVTVRVRRALPPPPAAGRLLGLVRRRPAAGSSASAGFSTTD
VHVPFTVLSRGPPAFDGVGGTADGIGDGGVCGRVAFAELEAERQSGDAFE
MEAVRAKAGGLVSGTRAVTWNMQGRMIDDGYGSIGASALLLGEGDGGAAD
PPPPPMVYSIRSGDHRIGSFILHKAEFCAGDIVLGNFDFSGASTRCLQVC
ACLEVCEENQNAFPRDAASSAPGRPKPQPDVRSTCHKRVVDSCKVCSCWA
*
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mRNA from alignment at Ecto-sp13_S_contig18736:515..3138+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18736.5897.1 ID=mRNA_Ecto-sp13_S_contig18736.5897.1|Name=mRNA_Ecto-sp13_S_contig18736.5897.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2624bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18736:515..3138+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTACAGCGGTCTCACGGACGACCGATCTGCGTGCGTCTTCGCCTCGGA
AGTTGCCTTCCTGCTCAAGAAGGAGAGGGTGGACGGCGGCAGGCACCCGG
CCTCGTTCCGGTTCAGCTTCGTGCTTCCCGAAAACCTTACGCCCACGTTC
CGGGTGAGAGAGACTTTTTATCTTCTAGATCGTGTGTCGTGACGCCGTGC
TTTCGCCTCGCGGAGTCGCGCGATAGACGCTCGTTTGTTTCGTTTTGCTT
TCTTGACAAGTGGTGGTGGGGGGCATATCGGTGCCCCGACCCCTTTTCCC
CGAGCCTCCTCCAGCAAGAAAACACCAACAGCATCACTAGATCACGCCTT
ATTTCTTCCTCTGGCACAAACATATGAAATGGACGCGTGTGGCAGGGCGT
CGGAGTCCGGTACGCGTACGCGGTCACCGTGCGCGTCCGGCGAGCGCTCC
CGCCTCCGCCGGCGGCCGGCCGCCTCCTCGGCTTGGTGCGAAGAAGACCC
GCCGCGGGGTCCTCGGCCTCCGCCGGGTTTTCCACGACTGACGTCCACGT
GCCGTTTACGGTTCTCTCTCGCGGCCCCCCCGCCTTCGACGGCGTCGGGG
GCACCGCGGACGGGATTGGCGACGGGGGTGTGTGTGGGAGGGTGGCGTTC
GCTGAGCTGGAAGCTGAGCGGCAATCCGGCGACGCGTTCGAGATGGAGGC
GGTCAGGGCGAAGGCGGGCGGGCTGGTGTCGGGGACCCGCGCGGTCACCT
GGAACATGCAGGTGGGTGTAGGGTACGTGAGCCGCTGTGTAGTTTTGGGG
CGCCGTCGTTACGTGTGTTGCGCCAAGTGGCGTAGGAGATTTGTGTGTCG
TCGCAAGAGGGGGTAGCGGCGTAGATTTTTTTTTTTTAAGTTCACGTACA
TGTCACGGAAAGACTGCCTGTTCGAATTATACCACGGTCAAAGGGTTGTG
TTGACGTCTTTCACGTAAGTGGGAACCGGGCTGGACACTGGGCGTATTTT
GAATATGCCAAGCCTCTCTACTGTATTGTGGTGATGCCAGCTGGAGCTAC
TCTTTGTTGGATTCGTGAGTTGATCGTGGCATGACAGTAGGATGGTGTAG
GTCGTGGTTAAGACCACGCGGTGCTCCATCGTACCTTGAACGCCTCGACG
CAACAAGTCTTAGCAACCAACTCTCGAAACGGCGCTTGCGGTCGACGACA
ACCGCGGAAGCCGGTAGCGGTGAGTGTCTTTGACGGAACCATTGCCGCTT
AAGCTCTGCCGCTCTTTCACTTTCTCTTTTCTCTCTCAACTCTCTCCGTG
TTTTGTCTTTAACCCTGACGGTAGAGACGCCGTTTCGAAGAGCAACTCCA
TCATCGGCTTCTGTGTTTCCATCATTTCGCCTCTTTCTCTACCTCTCTTT
GTACTCTGTGTTAGTAGAGTAACCGTTAGCACACCCCCCCCCCCCTCGGC
GACACGAAAACCGAAAAATCAAGGGGCGGATGATCGACGACGGCTATGGC
AGCATTGGCGCATCGGCCTTGCTACTAGGGGAAGGCGACGGCGGGGCTGC
AGATCCACCGCCCCCTCCCATGGTCTACTCGATAAGAAGCGGGGACCATC
GCATTGGGAGTTTTATCCTGCATAAGGCGGAGTTCTGTGCGGGTGACATC
GTCCTTGGCAACTTCGACTTCTCAGGGGCGTCGACTCGTTGTCTGCAAGT
AAGGGGCTTGGGGTTCTGTGGGTTTCGAATGTGTTTTGGGAGGAAGGGCG
TCCTCATATCGCCGTGCATGCTTTAGTGGTTAGTCCAGTGACCTCGCATC
CCTACAAAGACGGGATGGAACACGTCGCGTTTTCACCGGACCAGGCTTGC
ACATCACGAAGCGCGAAGCGCCGTGAGGTCGGCGAGGGGGGTGCAGAAGT
ATGCTCGCGGGATTTTCAATAATCCTACTCGTATTTGGCTATTTGACTAC
CGCGAGCCCGTTCTTTCTGCTTTCTCCGACGGTTTCACAAGATGCCGTCA
AGTTAACAAACACTTATTTTTTTCTTGCGCAACCAAGGGGTTGAAGACGA
GCACAGGAGAACTGTGGATTAAATAAAATCATGCGTTATGGTTGCTTCCT
GTGTGAACCCGGCCGATGTGGCAAACGAATACCAAAAGGTGTAAACAGTT
GCGCAGAAAAAAATGGGGCCAAAACACAAACACACGTGGCGCACTCTGGG
ACGGGGGGGGGGGGATAGGTGACCCAGCACTAATTAGTCACGCATGTTAG
GGTTTGATGCCATGTTGTCAACTGCCTGTCGCCGTGACGGCGGCAGCGCT
TTTTACAGCTGTTGCTACTCCCTGTGCCAGGTTCTGGCTGGTAGATGCGC
CACCTTTGTCTCGTCCCCGTTTCACAACTGGTTGGTTGCTAGCCGGTTTC
CTCCTTGGCGAGGGCCGTACTTGAGTGCTAACCCCGCGCCCACGCCCCTC
CGTCGAGATATTCAGGTGTGTGCGTGCTTGGAGGTTTGCGAAGAGAACCA
GAACGCGTTTCCCCGGGACGCGGCGTCGTCAGCCCCTGGGAGGCCGAAAC
CGCAGCCGGACGTCCGCAGCACCTGCCACAAGCGCGTCGTGGACTCGTGC
AAGGTTTGTTCGTGCTGGGCATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18736:515..3138+

>mRNA_Ecto-sp13_S_contig18736.5897.1 ID=mRNA_Ecto-sp13_S_contig18736.5897.1|Name=mRNA_Ecto-sp13_S_contig18736.5897.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=903bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18736:515..3138+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTACAGCGGTCTCACGGACGACCGATCTGCGTGCGTCTTCGCCTCGGA
AGTTGCCTTCCTGCTCAAGAAGGAGAGGGTGGACGGCGGCAGGCACCCGG
CCTCGTTCCGGTTCAGCTTCGTGCTTCCCGAAAACCTTACGCCCACGTTC
CGGGGCGTCGGAGTCCGGTACGCGTACGCGGTCACCGTGCGCGTCCGGCG
AGCGCTCCCGCCTCCGCCGGCGGCCGGCCGCCTCCTCGGCTTGGTGCGAA
GAAGACCCGCCGCGGGGTCCTCGGCCTCCGCCGGGTTTTCCACGACTGAC
GTCCACGTGCCGTTTACGGTTCTCTCTCGCGGCCCCCCCGCCTTCGACGG
CGTCGGGGGCACCGCGGACGGGATTGGCGACGGGGGTGTGTGTGGGAGGG
TGGCGTTCGCTGAGCTGGAAGCTGAGCGGCAATCCGGCGACGCGTTCGAG
ATGGAGGCGGTCAGGGCGAAGGCGGGCGGGCTGGTGTCGGGGACCCGCGC
GGTCACCTGGAACATGCAGGGGCGGATGATCGACGACGGCTATGGCAGCA
TTGGCGCATCGGCCTTGCTACTAGGGGAAGGCGACGGCGGGGCTGCAGAT
CCACCGCCCCCTCCCATGGTCTACTCGATAAGAAGCGGGGACCATCGCAT
TGGGAGTTTTATCCTGCATAAGGCGGAGTTCTGTGCGGGTGACATCGTCC
TTGGCAACTTCGACTTCTCAGGGGCGTCGACTCGTTGTCTGCAAGTGTGT
GCGTGCTTGGAGGTTTGCGAAGAGAACCAGAACGCGTTTCCCCGGGACGC
GGCGTCGTCAGCCCCTGGGAGGCCGAAACCGCAGCCGGACGTCCGCAGCA
CCTGCCACAAGCGCGTCGTGGACTCGTGCAAGGTTTGTTCGTGCTGGGCA
TGA
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