mRNA_Ecto-sp13_S_contig1871.5889.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1871.5889.1
Unique NamemRNA_Ecto-sp13_S_contig1871.5889.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1871.5889.1 vs. uniprot
Match: D8LIT3_ECTSI (Rab2B, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIT3_ECTSI)

HSP 1 Score: 408 bits (1049), Expect = 3.180e-142
Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 1 
Query:  292 MPTLLFKYIIIGNTAVGKSAILLQFTERQFRDAHDMTIGVEFGAKDVSIGDAQVKLEIWDTAGQESFLSITRSYYRGTDGCLLVFDITDRKSFEALPRWLDEARMNSANPDLSVMLIANKADLAEKRCVTTEEGQAFADKHGLLFMEMSARNAAQVERAFIGTAERIFSDLEAHPRNKPSGIQLKPEEMSATSRFKAECCEGV 900
            MPTLLFKYIIIGNTAVGKSAILLQFTERQFRDAHDMTIGVEFGAKDVSIGDAQVKLEIWDTAGQESFLSITRSYYRGTDGCLLVFDITDRKSFEALPRWLDEARMNSANPDLSVMLIANKADLAEKRCVTTEEGQAFADKHGLLFMEMSARNAAQVERAFIGTAERIFSDLEAHPRNKPSGIQLKPEEMSATSRFKAECCEGV
Sbjct:    1 MPTLLFKYIIIGNTAVGKSAILLQFTERQFRDAHDMTIGVEFGAKDVSIGDAQVKLEIWDTAGQESFLSITRSYYRGTDGCLLVFDITDRKSFEALPRWLDEARMNSANPDLSVMLIANKADLAEKRCVTTEEGQAFADKHGLLFMEMSARNAAQVERAFIGTAERIFSDLEAHPRNKPSGIQLKPEEMSATSRFKAECCEGV 203
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BLAST of mRNA_Ecto-sp13_S_contig1871.5889.1 vs. uniprot
Match: F0Y2Q0_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y2Q0_AURAN)

HSP 1 Score: 233 bits (593), Expect = 6.650e-73
Identity = 110/196 (56.12%), Postives = 149/196 (76.02%), Query Frame = 1 
Query:  304 LFKYIIIGNTAVGKSAILLQFTERQFRDAHDMTIGVEFGAKDVSIGDA-QVKLEIWDTAGQESFLSITRSYYRGTDGCLLVFDITDRKSFEALPRWLDEARMNSANPDLSVMLIANKADLAEKRCVTTEEGQAFADKHGLLFMEMSARNAAQVERAFIGTAERIFSDLEAHPRNKPSGIQLKPEEMSATSRFKAEC 888
            LFKYIIIG+T VGKS+I+L FTE+ F+ AHDMTIGVEF ++ V + D  Q  LEIWDTAGQES+LSITRSYYRGTD CLLV+D+T R+SF+ LPRWL+EA+ N++NP+L +ML+ NKADL   R ++  EG+AFAD HG+LF+E++A+N   VE  F+ +A+R+ +   A+PR K + ++L+PE  +    F   C
Sbjct:   12 LFKYIIIGDTEVGKSSIMLMFTEQHFQQAHDMTIGVEFDSRSVQLSDGNQANLEIWDTAGQESYLSITRSYYRGTDCCLLVYDVTRRESFDHLPRWLNEAKQNASNPNLVLMLVGNKADLEGSRQISRAEGKAFADLHGMLFVELTAKNQNLVESVFVESAQRVLAVQRANPRAKSAAVKLQPESRAKKDDFDCGC 207
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BLAST of mRNA_Ecto-sp13_S_contig1871.5889.1 vs. uniprot
Match: A0A8J2S4D0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S4D0_9STRA)

HSP 1 Score: 221 bits (564), Expect = 1.550e-68
Identity = 110/196 (56.12%), Postives = 140/196 (71.43%), Query Frame = 1 
Query:  304 LFKYIIIGNTAVGKSAILLQFTERQFRDAHDMTIGVEFGAKDVSI-GDAQVKLEIWDTAGQESFLSITRSYYRGTDGCLLVFDITDRKSFEALPRWLDEARMNSANPDLSVMLIANKADLAEKRCVTTEEGQAFADKHGLLFMEMSARNAAQVERAFIGTAERIFSDLEAHPRNKPSGIQLKPEEMSATSRFKAEC 888
            LFKYIIIG+T VGKS+++L FTER F +AHDMTIGVEF ++ V + G     LEIWDTAGQES+LSITRSYYRGTD CLLV+D+T R+SF+ L RWL EAR N+ANPDL +ML+ NKADL  KR ++  EG+AFAD HG+LF+E+SA+N   VE  F+ +A+R+ +    +PR +   I L       T      C
Sbjct:   11 LFKYIIIGDTEVGKSSLMLMFTERHFGEAHDMTIGVEFDSRAVKLAGGEAANLEIWDTAGQESYLSITRSYYRGTDCCLLVYDVTRRESFDHLGRWLQEARQNAANPDLVLMLVGNKADLESKRQISRAEGKAFADLHGMLFVELSAKNEKLVESVFVESAQRVLNVRRDNPRQRGPNIALAQPSRRTTDYDYCGC 206
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BLAST of mRNA_Ecto-sp13_S_contig1871.5889.1 vs. uniprot
Match: A0A7R9A5U8_9CRUS (Hypothetical protein n=1 Tax=Darwinula stevensoni TaxID=69355 RepID=A0A7R9A5U8_9CRUS)

HSP 1 Score: 219 bits (559), Expect = 1.070e-67
Identity = 109/186 (58.60%), Postives = 143/186 (76.88%), Query Frame = 1 
Query:  304 LFKYIIIGNTAVGKSAILLQFTERQFRDAHDMTIGVEFGAKDVSIGDAQVKLEIWDTAGQESFLSITRSYYRGTDGCLLVFDITDRKSFEALPRWLDEARMNSANPDLSVMLIANKADLAEKRCVTTEEGQAFADKHGLLFMEMSARNAAQVERAFIGTAERIFSDLEA---HPRNKPSGIQLKPE 852
            LFKYIIIG+T VGKS +LLQFT+++F+  HD+TIGVEFGA+ ++I D Q+KL+IWDTAGQE+F SITRSYYRG  G LLV+DIT R +F  L +WLD+AR +S N ++ +MLI NK+DL  +R V  EEG+AFA +HGL+FME SA+ AA VE AFI TA+ I+  L+     P N+ +GI+L P+
Sbjct:    6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIEDKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRDTFNHLTQWLDDARQHS-NSNMVIMLIGNKSDLESRRDVKKEEGEAFAREHGLIFMETSAKTAANVEEAFISTAKEIYMKLQEGVFDPNNEANGIKLGPQ 190
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BLAST of mRNA_Ecto-sp13_S_contig1871.5889.1 vs. uniprot
Match: S4REH2_PETMA (RAB2B, member RAS oncogene family n=2 Tax=Petromyzon marinus TaxID=7757 RepID=S4REH2_PETMA)

HSP 1 Score: 218 bits (556), Expect = 3.680e-67
Identity = 109/191 (57.07%), Postives = 144/191 (75.39%), Query Frame = 1 
Query:  304 LFKYIIIGNTAVGKSAILLQFTERQFRDAHDMTIGVEFGAKDVSIGDAQVKLEIWDTAGQESFLSITRSYYRGTDGCLLVFDITDRKSFEALPRWLDEARMNSANPDLSVMLIANKADLAEKRCVTTEEGQAFADKHGLLFMEMSARNAAQVERAFIGTAERIFSDLEA---HPRNKPSGIQLKPEEMSAT 867
            LFKYIIIG+T VGKS +LLQFT+++F+  HD+TIGVEFGA+ ++IG  QVKL+IWDTAGQESF SITRSYYRG  G LLV+DIT R +F  L  WL++AR +S N ++ +MLI NK+DL  +R V  EEG+AFA +HGL+FME SA+ AA VE AFI TA  I+  ++       N+ +GI++ P+++ AT
Sbjct:   11 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMIAIGGKQVKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTAWLEDARQHS-NSNMVIMLIGNKSDLESRREVKCEEGEAFAREHGLVFMETSAKTAANVEEAFINTAREIYEKIQEGVFDVNNEANGIKIGPQQLGAT 200
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BLAST of mRNA_Ecto-sp13_S_contig1871.5889.1 vs. uniprot
Match: D7FSF1_ECTSI (Rab2A, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSF1_ECTSI)

HSP 1 Score: 218 bits (554), Expect = 5.160e-67
Identity = 112/204 (54.90%), Postives = 148/204 (72.55%), Query Frame = 1 
Query:  304 LFKYIIIGNTAVGKSAILLQFTERQFRDAHDMTIGVEFGAKDVSIGDAQVKLEIWDTAGQESFLSITRSYYRGTDGCLLVFDITDRKSFEALPRWLDEARMNSANPDLSVMLIANKADLAEKRCVTTEEGQAFADKHGLLFMEMSARNAAQVERAFIGTAERIFSDLEA---HPRNKPSGIQLKPEEMS-----ATSRFKAECC 891
            LFKYIIIG+T VGKS +LLQFT+++F+  HD+TIGVEFGA+ +SI + Q+KL+IWDTAGQESF SITRSYYRG  G LLV+DIT R +F  L RWL+EAR NS N ++ +MLI NK+DL  +R VTT+EG+ FA+++GL+F+E SA+ A  VE AFI TA +I+ ++ +    P N+  GI+L P         A    K+ CC
Sbjct:    6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMISIDNRQMKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEARQNS-NSNMVIMLIGNKSDLTSRRAVTTKEGEQFAEENGLIFLETSAKMATNVETAFIKTAAKIYDNILSGVYDPTNEAHGIKLGPAASLNYNNVAPPADKSSCC 208
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BLAST of mRNA_Ecto-sp13_S_contig1871.5889.1 vs. uniprot
Match: A0A7S2CHD5_9STRA (Hypothetical protein n=3 Tax=Dictyochophyceae TaxID=39119 RepID=A0A7S2CHD5_9STRA)

HSP 1 Score: 218 bits (554), Expect = 5.330e-67
Identity = 113/205 (55.12%), Postives = 152/205 (74.15%), Query Frame = 1 
Query:  304 LFKYIIIGNTAVGKSAILLQFTERQFRDAHDMTIGVEFGAKDVSIGDAQVKLEIWDTAGQESFLSITRSYYRGTDGCLLVFDITDRKSFEALPRWLDEARMNSANPDLSVMLIANKADLAEKRCVTTEEGQAFADKHGLLFMEMSARNAAQVERAFIGTAERIFSDLEA---HPRNKPSGIQLK------PEEMSATSRFKAECC 891
            LFKYIIIG+T VGKS +LLQFT+++F+  HD+TIGVEFGA+ V+I + Q+KL+IWDTAGQESF SITRSYYRG  G LLV+DIT R +F  L RWL+EA+ NS NP++ +MLI NK+DL  +R V+T+EG+ FA+++GL+F+E SA+ AA VE+AFI TAE+I+  + +      N+  GI++       P+  S  S  KA CC
Sbjct:    6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDNRQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEAKQNS-NPNMVIMLIGNKSDLDHRRAVSTKEGEQFAEENGLIFLETSAKTAANVEQAFIKTAEKIYEKILSGVYDVTNEAHGIKIGMNQHSGPDNNSGRSSNKA-CC 208
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BLAST of mRNA_Ecto-sp13_S_contig1871.5889.1 vs. uniprot
Match: A0A5B8MXK9_9CHLO (Small rab-like GTPase n=2 Tax=Chlorophyta TaxID=3041 RepID=A0A5B8MXK9_9CHLO)

HSP 1 Score: 218 bits (554), Expect = 6.070e-67
Identity = 105/168 (62.50%), Postives = 135/168 (80.36%), Query Frame = 1 
Query:  304 LFKYIIIGNTAVGKSAILLQFTERQFRDAHDMTIGVEFGAKDVSIGDAQVKLEIWDTAGQESFLSITRSYYRGTDGCLLVFDITDRKSFEALPRWLDEARMNSANPDLSVMLIANKADLAEKRCVTTEEGQAFADKHGLLFMEMSARNAAQVERAFIGTAERIFSDLE 807
            LFKYIIIG+T VGKS +LLQFT+++F+  HD+TIGVEFGA+ V+I   Q+KL+IWDTAGQESF SITRSYYRG  G LLV+DIT R++F +L  WLD+AR + AN ++++MLI NK+DL  +R VTTEEG+AFA +HGL+FME SA+ A  VE AFI TA +I+  +E
Sbjct:    6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNSLASWLDDARQH-ANANMTIMLIGNKSDLTHRRAVTTEEGEAFAKEHGLVFMETSAKTAHNVEEAFINTARKIYDKIE 172
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BLAST of mRNA_Ecto-sp13_S_contig1871.5889.1 vs. uniprot
Match: A0A7S3C719_9CHLO (Hypothetical protein n=2 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3C719_9CHLO)

HSP 1 Score: 218 bits (554), Expect = 6.070e-67
Identity = 105/168 (62.50%), Postives = 135/168 (80.36%), Query Frame = 1 
Query:  304 LFKYIIIGNTAVGKSAILLQFTERQFRDAHDMTIGVEFGAKDVSIGDAQVKLEIWDTAGQESFLSITRSYYRGTDGCLLVFDITDRKSFEALPRWLDEARMNSANPDLSVMLIANKADLAEKRCVTTEEGQAFADKHGLLFMEMSARNAAQVERAFIGTAERIFSDLE 807
            LFKYIIIG+T VGKS +LLQFT+++F+  HD+TIGVEFGA+ V+I   Q+KL+IWDTAGQESF SITRSYYRG  G LLV+DIT R++F +L  WLD+AR + AN ++++MLI NK+DL  +R VTTEEG+AFA +HGL+FME SA+ A  VE AFI TA +I+  +E
Sbjct:    6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNSLASWLDDARQH-ANANMTIMLIGNKSDLTHRRAVTTEEGEAFAKEHGLVFMETSAKTAHNVEEAFINTARKIYDKIE 172
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1871.5889.1 vs. uniprot
Match: A0A835Z1V8_9STRA (Rab2A, rab family GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1V8_9STRA)

HSP 1 Score: 217 bits (553), Expect = 8.310e-67
Identity = 106/185 (57.30%), Postives = 144/185 (77.84%), Query Frame = 1 
Query:  304 LFKYIIIGNTAVGKSAILLQFTERQFRDAHDMTIGVEFGAKDVSIGDAQVKLEIWDTAGQESFLSITRSYYRGTDGCLLVFDITDRKSFEALPRWLDEARMNSANPDLSVMLIANKADLAEKRCVTTEEGQAFADKHGLLFMEMSARNAAQVERAFIGTAERIFSDLEA---HPRNKPSGIQLKP 849
            LFKYIIIG+T VGKS +LLQFT+++F+  HD+TIGVEFGA+ +++   Q+KL+IWDTAGQESF SITRSYYRG  G LLV+DIT R +F  L RWL+EAR NS N ++ +MLI NK+DL  +R V+T+EG+ FA ++GL+F+E SA+ AA VE AFI TAE+I+ ++++    P N+  G++L P
Sbjct:    6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPLHDLTIGVEFGARMINVDARQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEARQNS-NSNMVIMLIGNKSDLEHRRAVSTKEGEQFAAENGLIFLETSAKTAANVEAAFIQTAEKIYGNIQSGVYDPTNEAHGVKLGP 189
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1871.5889.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIT3_ECTSI3.180e-142100.00Rab2B, RAB family GTPase n=2 Tax=Ectocarpus TaxID=... [more]
F0Y2Q0_AURAN6.650e-7356.12Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A8J2S4D0_9STRA1.550e-6856.12Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7R9A5U8_9CRUS1.070e-6758.60Hypothetical protein n=1 Tax=Darwinula stevensoni ... [more]
S4REH2_PETMA3.680e-6757.07RAB2B, member RAS oncogene family n=2 Tax=Petromyz... [more]
D7FSF1_ECTSI5.160e-6754.90Rab2A, RAB family GTPase n=2 Tax=Ectocarpus TaxID=... [more]
A0A7S2CHD5_9STRA5.330e-6755.12Hypothetical protein n=3 Tax=Dictyochophyceae TaxI... [more]
A0A5B8MXK9_9CHLO6.070e-6762.50Small rab-like GTPase n=2 Tax=Chlorophyta TaxID=30... [more]
A0A7S3C719_9CHLO6.070e-6762.50Hypothetical protein n=2 Tax=Chloropicon roscoffen... [more]
A0A835Z1V8_9STRA8.310e-6757.30Rab2A, rab family GTPase n=1 Tax=Tribonema minus T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1871contigEcto-sp13_S_contig1871:463..5652 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score407.1
Seed ortholog evalue4.7e-111
Seed eggNOG ortholog2880.D8LIT3
Preferred nameRab2
Model size955
KEGG koko:K07877
KEGG Pathwayko04152,map04152
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0000331,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005794,GO:0006810,GO:0006897,GO:0006909,GO:0006950,GO:0006970,GO:0008150,GO:0008219,GO:0009628,GO:0009987,GO:0012505,GO:0016020,GO:0016192,GO:0017157,GO:0030587,GO:0031090,GO:0031164,GO:0031410,GO:0031982,GO:0031984,GO:0032502,GO:0032879,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045921,GO:0048518,GO:0048522,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051179,GO:0051234,GO:0051703,GO:0051704,GO:0060627,GO:0065007,GO:0090702,GO:0097708,GO:0098588,GO:0098657,GO:0098791,GO:0098805,GO:0099120,GO:1903530,GO:1903532
Exons6
EggNOG free text desc.GTPase activity
EggNOG OGsCOG1100@1,KOG0098@2759
Ec32 ortholog descriptionRab2B, RAB family GTPase
Ec32 orthologEc-20_001420.1
Cds size612
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04031,ko04131,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1871.5889.1prot_Ecto-sp13_S_contig1871.5889.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1871 515..5361 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462959.0594354-UTR-Ecto-sp13_S_contig1871:462..5141681462959.0594354-UTR-Ecto-sp13_S_contig1871:462..514Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1871 463..514 -
1681462959.1447046-UTR-Ecto-sp13_S_contig1871:5361..56521681462959.1447046-UTR-Ecto-sp13_S_contig1871:5361..5652Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1871 5362..5652 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462959.0727582-CDS-Ecto-sp13_S_contig1871:514..6281681462959.0727582-CDS-Ecto-sp13_S_contig1871:514..628Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1871 515..628 -
1681462959.0884843-CDS-Ecto-sp13_S_contig1871:1070..11911681462959.0884843-CDS-Ecto-sp13_S_contig1871:1070..1191Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1871 1071..1191 -
1681462959.0995383-CDS-Ecto-sp13_S_contig1871:1777..19391681462959.0995383-CDS-Ecto-sp13_S_contig1871:1777..1939Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1871 1778..1939 -
1681462959.1095877-CDS-Ecto-sp13_S_contig1871:2291..23471681462959.1095877-CDS-Ecto-sp13_S_contig1871:2291..2347Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1871 2292..2347 -
1681462959.1194172-CDS-Ecto-sp13_S_contig1871:3297..34131681462959.1194172-CDS-Ecto-sp13_S_contig1871:3297..3413Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1871 3298..3413 -
1681462959.1355443-CDS-Ecto-sp13_S_contig1871:5318..53611681462959.1355443-CDS-Ecto-sp13_S_contig1871:5318..5361Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1871 5319..5361 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1871.5889.1

>prot_Ecto-sp13_S_contig1871.5889.1 ID=prot_Ecto-sp13_S_contig1871.5889.1|Name=mRNA_Ecto-sp13_S_contig1871.5889.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=204bp
MPTLLFKYIIIGNTAVGKSAILLQFTERQFRDAHDMTIGVEFGAKDVSIG
DAQVKLEIWDTAGQESFLSITRSYYRGTDGCLLVFDITDRKSFEALPRWL
DEARMNSANPDLSVMLIANKADLAEKRCVTTEEGQAFADKHGLLFMEMSA
RNAAQVERAFIGTAERIFSDLEAHPRNKPSGIQLKPEEMSATSRFKAECC
EGV*
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mRNA from alignment at Ecto-sp13_S_contig1871:463..5652-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1871.5889.1 ID=mRNA_Ecto-sp13_S_contig1871.5889.1|Name=mRNA_Ecto-sp13_S_contig1871.5889.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5190bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1871:463..5652- (Ectocarpus species13 EcNAP12_S_4_19m)
ATCAAAGGAGCTTGTGCTGCTAAGGCACCGATCTCTTTTCCAGATCGCAC
ACAATCAACTCCAAACACCCCACCGTTGTAGACCTCCGGCGTCCCTGAGA
GCTGCTGCTATCCACCGTGGCCCGCCGCTGGAGGCACTGCTGGCTGTGTT
GCTCCAATCAGGTGGCATTACCCCGCTTGCTGTGGAAGTCGTGGACGGTG
CTTGGGCGACACCGCGGTTCAGTCGATTGCAGGAGCTGTGGGTGTGGGAA
GGAGGATCATCCCGGCCTTGGGGCGGCACTGCTGCTGAGCCATGCCGACC
CTGCTGTTCAAGTACATCATTATCGGCAACACCGGTGAGCCGCAGCTTTG
AGTTGTCGTGTTTCTTTAAATCTTCCCCGATGCCCCCTCTCCCTGCCCCC
TTGAGACAGCAGTGGTGGTCGGAGGTCGACGGGCTCTTTCGCCGTCTCTG
CAACTGAATTCTTGCAGAAAAGAGATCACTTTTCGACTCTAGCACTCACG
ACAAACAAATATATAGGCAGGCGGCTCTGCTTCCCTTTTATTTTCTGAAA
AGATCGATGCGTTGCTCGCAACCAGCAGCTGAGGGCGGCGGTCTCATTCT
GAGAGCATTGCATGATCGCGATGCAGCCCGTTGTCGGTGAACAGGCGAAA
ACACGGGCGGCACGTCGAAACTTGAGCGGGCTCACAAGGTGTTCCGAATA
CCCGACTAAATGGCGGACAGGACCCGCACGCACAACAGTCATAACAAGGT
TGTTTCCATCTGCCACTGGCGAGTCATGGCTGTCAAACAAATCAGACATT
TATTTCCGCTATGCACGCGGTTCGGTTCACACAAACGTTCAAAGTTGTCC
CGGTAAATTCGCAAGGCTTCATCACTCTTGCTACCCATACGAGGAATGAT
ATACTTTGTTACGTTGCACGTAGGATGCATACAATGTACTATGTACGGAC
GTATCATAATGCCACCCACCGTTTTCGGGACACGGCGTATCTACATGTGT
ACTTCATGTGTTGTTGGGCGCACCAAACGGGCTCACAATGCGAAAGGCAA
AACAGCAGGGGTGTTGGGGGTGTACTACGGTATATTTTTTCTCTGCCCGC
TTCTTTCTGCGGTCCAGAAAATACGAGTTAAAAGTTCATGGTAGCGAAAA
ACCAAAGAATGTGAAGAAAAACACAGAAGAATTCGATACCCCAATCATTA
TGAGAAGAACGCCATCTCCCAGCATGTAGAGGTATCTACCGTTTTTTTTC
GAGGGTGCTTACCAGAAAGTACCAGTACGAGCCCACAGACTTTCTTCCGC
TCTTGTTCAATGCCGTAGAACAAATAAAGACGACCCCGACCCAACTGGAA
ATTAGAATTTTTGTTTCCGGAGGTTGTGTGTGTTTTCGGTCAAGTGGACG
TGAGACACCCCCGCCCCCGCCCCAGTCGCGGTATGAGAGTGGGTGATGAG
ATCGAGACACAGACGGGTGCTTAACTCCGACATGAGCTTTGCCGAACTAT
CGACGGGTGATTACGGTGTGCTCTAGTTGTTGCGTGTAGTTCACAGCGCC
GAGGGGAGTATCCAATGCTTACGCGTGTTTTCTTGCCATGGGGGGTAGGG
CGGATTGGCGGCTTCGCAACTCGAAGTGATATTTGGAATGTACACTAGCG
TACCTTCAGGTGGTGGCGGGAAAATAGTTGTGGAAACCAGAACATTGAAT
GGGGCGGTAGAAGGTACTGAGCAGGTGACAGTCGAAGAAGCACCGCTGAG
GAACCCTAAATAGCATAGTCCGCCTGGTGCAGCAAGGAAACTTCCCATCA
AAAGCGCCCTATGTGTTGGGCGTGCTACATTTTTTCCGCCCCGGGTGATA
GCGTTCGTGGAATGGCGAGAATAAAACTCCATCCCGGCGAAAGGCACGTG
CGATGCCCCGACGAGCGCGAGTGATGTGGGTGTTCCTGACCGTCTGTCTG
TCTACTGTCTACGTGACCCCCCTCGCCCCCCCCCCCCTACAGCAGTCGTT
CCTGATCACAACAACGTACAGAACTGTTGTTTGGTTTTCCGACGCTGTTG
AAGACCGTGTGGTCTTGATGCTGACGTTCATGTGTGTTCACCCCTTCTCT
TTTCAGTCTGTTGCTACAACTCGATAGCCTCTTCTTTATGGCAGGCGAAA
AGATCTTGAAAAGGTTTCACCGCGACCGATCTGACAAGCCCTGCGTTTGA
CCGACCGCTCTTGCTCTCGCTCGTGCTCGCATCTTGTAGCGGTGGGGAAG
AGCGCGATCCTATTGCAGTTCACAGAGCGACAGTTCCGCGATGCGCACGA
CATGACTATCGGAGTCGAGTTTGGGGCCAAGGACGTGTCGATAGGAGATG
CCCAGGTGAGGGCGAGGATAGAACTTCGGATTCCCGCTGGTTTCATCTCT
CAGTAGCTCTGGCTTTTCGAGCGAGGTGTTCGTGTGCGTGGCGTATCCAC
GTTGAAGGGGGGGGGGGGGTTAGCCGTAAGACCGTCTTCGTTCTACACAA
AAAACTAATGTCGAGGAAATCTGTGGCACGCATGTGTCCGGTTTTTGCTC
CTGGAGGCCCTCCTTGTCAGCAAACCCCTTGTCGCGAGTAGACAAAACTC
GTCTTCCGTGTTCGCGAGGGAAGAGAGCGTTGAAATTATGGACCATCCTC
CCACGAACGTTGAAGGCAAGGCACCGGAGGCAAGAGGACAGCACTGCTCC
GAAGCGCCGGCTGTGCCGCCAGAGTGGTGCAACGAGCAGAGGGGCCTGAA
CTAGAGCGCGGATACATGTATCAATGCAATGGTCTGAAGCATATTGTACG
TATCGTGTGTGATTCGATAGAGTAGCACGCATGAAAGCCTGTCCGTGATG
CTCCCTACGGCGTGGGCGAGGAGTAAGAGAGTGTAGCGGGGTCACGAGAG
GAGGGGGGGGGCAGGGGGAGGCGTGTGCATGTTGGGAGATGGATTCCATG
TCTGCTTGTTCGACAGCTTTTTTTGGTGTCCCTCCAGCTGTACCCGCTGC
TGATACCGCGGCCGCAGCTAGTTCCTTGACGTATGTCTATTGAGCCAGTT
GTCCGCCGCGGTCCCGGCGGTGGCAACAACGTTCGTGGTGGGTTTTCCGT
GAACAAACGTTAGGCTATCGCGGTGTGCGGAGGAATGATGATACAACTGG
CCTCCGGTCTCTCCCTTCCCCCCCCCGTAACAAGAACGCCCTTGACTGGA
TTTTTCTTCTGAGGCGTCGTCGGTGTCATGCCTACTTGTCAGTCGTGGTG
ATCCAAACCTGTTGCTCCGGCTGCGGCCCCTACGGTGTTGCTTCTGTTTC
GTCAGGTTAAGCTAGAGATTTGGGATACGGCGGGACAAGAGTCATTCCTG
AGCATCACGAGGTGCGGAGGACATGTGAAACATTGTGGATTGGGCTGTTC
TTGAGAGGGATGGGGATGGGGGGGGGGGGCCGAGGATTAGACGACGTCGT
GGATTGCGGTATGAACGTTGCGTTGCAGCTGTCGACAGGCTTGCTCTTCC
ACCCTCATTTTGTCCGGTGTTGACCACTTCTGATAGAGTGGCAGGAAGAC
CTGCTGTTGACCACGCGTACCGCATACGTTTGGAACATGTTCGAACGTTG
TCACACTCACGCTAGAGGGTGCCAGGGATACACTCAGCGAAAGCTGGTGA
TGCTGCTGCTTGTATTCAAGGTACTTACCCCCTAATGTCCCACCATTCAC
CACCGTACGGTAGATCATACTACCGTGGGACCGACGGCTGCCTGTTGGTC
TTCGACATCACCGACCGAAAATCCTTCGAGGCGCTGCCGCGGTGGCTGGA
TGAGGCGAGGATGAACTCCGCGAATCCGGATCTTTCCGTCATGCTCATCG
CCAACAAAGCAGACCTCGCTGAAAAGTGAGTCAGGGTTGCGCTCTTTTAA
GCCAGAAGTCTGCCGAGGGTGTTCAGAATTATCGTGGTTGGTCAGGGAGT
GTACTAGAATATTTTTTGTGCTTATGGCAGGGCAAGGATGAAAGCACACG
TGTTCAGCAGACAGTCTGTCGTGCATTTGGCATGCGATGTCGTGATGTTT
TCATTTTCAGGTTGTTGTCCGCTGTTGGATTTTCGGGCAATCGCAGTGCG
TTTGGGAGAGCTTAAGCCACACAGCGCAACACACATTGTTGAAGGGGGAT
GTGGTTTTTTGCTGTTGATTGACAGGCGGTGTTTGCCGATGAAAAACGTT
TTTCACTTTGTTGTTGCGAAAATCCAGCGCAGAGAAAATCTAACATCGGT
ACCAGAACATGCCCATCAAATGTTTCGTTCGCAGGGCATGTGGATCGCTC
TGTGGATGAGCGACAGACCACAGTGCAGCCTGACCTCTGCTGCTTGCAGG
CGAATTGACTGTGATTTTGTTGGACAGGCCCCTCCCATTGACTGCGCGCG
CATGATGCCCTGAGCGCCTCTCGTATCGCACTAATGTGCGATCGTTTTGC
TGCGTTGTCAGGCGGTGTGTCACGACGGAGGAGGGGCAGGCGTTCGCGGA
CAAACACGGCTTGCTGTTCATGGAGATGTCGGCCAGAAACGCAGCGCAGG
TGGAACGAGCTTTCATCGGGACCGCAGAAAGGGTAAGGCGAAGGAAATAT
TTGTTGCCTTGGGCAGTGGGTGCCTAAGGCGAAGGGATATCTGTCAAAAA
GATCAAGGAAGATCCTGTCTTGCATTGACGGGTTTCCTGCAATCACCCAT
GGCTTTGTGTTGGACCATCCCTTCCCGCGAGTGGTATGGATATCGCACGT
GACGCGACCCCGGTCGTGGTCAATCTCTGCTATTCCTCGACGGTGCGAGC
GCCGCGTTTGGCGACAAGAAGTTATGACCTGCTACTAGTATCCCCGGCAT
CTGTCTCGTCTATCTGTCAAAATACCTACGCGTGTGTCGCGCTCTTTCAT
TCGATACGCCCGAGCATCCGGTAAATCCTCTAGTTGTGCCATTCTCCCCC
ATACATTTGCTGTTTTCCCCACTTTTCGCCTCTCCCTCCGCACATGGCTT
CTTCTCCTTTGCCCCGCGGTGCAGATATTCTCGGATTTAGAGGCGCATCC
ACGCAACAAGCCATCGGGGATCCAGCTGAAGCCGGAAGAGATGTCGGCTA
CGTCAAGATTCAAGGCAGAATGCTGTGAAGGGGTCTGAGCACTGCTGAGA
GGTTTCTCGAAAACACCATCAAGCATCTGCCCGCCGGGTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1871:463..5652-

>mRNA_Ecto-sp13_S_contig1871.5889.1 ID=mRNA_Ecto-sp13_S_contig1871.5889.1|Name=mRNA_Ecto-sp13_S_contig1871.5889.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=612bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1871:463..5652- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGACCCTGCTGTTCAAGTACATCATTATCGGCAACACCGCGGTGGG
GAAGAGCGCGATCCTATTGCAGTTCACAGAGCGACAGTTCCGCGATGCGC
ACGACATGACTATCGGAGTCGAGTTTGGGGCCAAGGACGTGTCGATAGGA
GATGCCCAGGTTAAGCTAGAGATTTGGGATACGGCGGGACAAGAGTCATT
CCTGAGCATCACGAGATCATACTACCGTGGGACCGACGGCTGCCTGTTGG
TCTTCGACATCACCGACCGAAAATCCTTCGAGGCGCTGCCGCGGTGGCTG
GATGAGGCGAGGATGAACTCCGCGAATCCGGATCTTTCCGTCATGCTCAT
CGCCAACAAAGCAGACCTCGCTGAAAAGCGGTGTGTCACGACGGAGGAGG
GGCAGGCGTTCGCGGACAAACACGGCTTGCTGTTCATGGAGATGTCGGCC
AGAAACGCAGCGCAGGTGGAACGAGCTTTCATCGGGACCGCAGAAAGGAT
ATTCTCGGATTTAGAGGCGCATCCACGCAACAAGCCATCGGGGATCCAGC
TGAAGCCGGAAGAGATGTCGGCTACGTCAAGATTCAAGGCAGAATGCTGT
GAAGGGGTCTGA
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