prot_Ecto-sp13_S_contig1871.5889.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1871.5889.1
Unique Nameprot_Ecto-sp13_S_contig1871.5889.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length204
Homology
BLAST of mRNA_Ecto-sp13_S_contig1871.5889.1 vs. uniprot
Match: D8LIT3_ECTSI (Rab2B, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIT3_ECTSI)

HSP 1 Score: 409 bits (1052), Expect = 1.220e-144
Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 0
Query:    1 MPTLLFKYIIIGNTAVGKSAILLQFTERQFRDAHDMTIGVEFGAKDVSIGDAQVKLEIWDTAGQESFLSITRSYYRGTDGCLLVFDITDRKSFEALPRWLDEARMNSANPDLSVMLIANKADLAEKRCVTTEEGQAFADKHGLLFMEMSARNAAQVERAFIGTAERIFSDLEAHPRNKPSGIQLKPEEMSATSRFKAECCEGV 203
            MPTLLFKYIIIGNTAVGKSAILLQFTERQFRDAHDMTIGVEFGAKDVSIGDAQVKLEIWDTAGQESFLSITRSYYRGTDGCLLVFDITDRKSFEALPRWLDEARMNSANPDLSVMLIANKADLAEKRCVTTEEGQAFADKHGLLFMEMSARNAAQVERAFIGTAERIFSDLEAHPRNKPSGIQLKPEEMSATSRFKAECCEGV
Sbjct:    1 MPTLLFKYIIIGNTAVGKSAILLQFTERQFRDAHDMTIGVEFGAKDVSIGDAQVKLEIWDTAGQESFLSITRSYYRGTDGCLLVFDITDRKSFEALPRWLDEARMNSANPDLSVMLIANKADLAEKRCVTTEEGQAFADKHGLLFMEMSARNAAQVERAFIGTAERIFSDLEAHPRNKPSGIQLKPEEMSATSRFKAECCEGV 203          
BLAST of mRNA_Ecto-sp13_S_contig1871.5889.1 vs. uniprot
Match: F0Y2Q0_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y2Q0_AURAN)

HSP 1 Score: 233 bits (595), Expect = 5.710e-75
Identity = 110/196 (56.12%), Postives = 149/196 (76.02%), Query Frame = 0
Query:    5 LFKYIIIGNTAVGKSAILLQFTERQFRDAHDMTIGVEFGAKDVSIGDA-QVKLEIWDTAGQESFLSITRSYYRGTDGCLLVFDITDRKSFEALPRWLDEARMNSANPDLSVMLIANKADLAEKRCVTTEEGQAFADKHGLLFMEMSARNAAQVERAFIGTAERIFSDLEAHPRNKPSGIQLKPEEMSATSRFKAEC 199
            LFKYIIIG+T VGKS+I+L FTE+ F+ AHDMTIGVEF ++ V + D  Q  LEIWDTAGQES+LSITRSYYRGTD CLLV+D+T R+SF+ LPRWL+EA+ N++NP+L +ML+ NKADL   R ++  EG+AFAD HG+LF+E++A+N   VE  F+ +A+R+ +   A+PR K + ++L+PE  +    F   C
Sbjct:   12 LFKYIIIGDTEVGKSSIMLMFTEQHFQQAHDMTIGVEFDSRSVQLSDGNQANLEIWDTAGQESYLSITRSYYRGTDCCLLVYDVTRRESFDHLPRWLNEAKQNASNPNLVLMLVGNKADLEGSRQISRAEGKAFADLHGMLFVELTAKNQNLVESVFVESAQRVLAVQRANPRAKSAAVKLQPESRAKKDDFDCGC 207          
BLAST of mRNA_Ecto-sp13_S_contig1871.5889.1 vs. uniprot
Match: A0A8J2S4D0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S4D0_9STRA)

HSP 1 Score: 222 bits (566), Expect = 1.400e-70
Identity = 110/196 (56.12%), Postives = 140/196 (71.43%), Query Frame = 0
Query:    5 LFKYIIIGNTAVGKSAILLQFTERQFRDAHDMTIGVEFGAKDVSI-GDAQVKLEIWDTAGQESFLSITRSYYRGTDGCLLVFDITDRKSFEALPRWLDEARMNSANPDLSVMLIANKADLAEKRCVTTEEGQAFADKHGLLFMEMSARNAAQVERAFIGTAERIFSDLEAHPRNKPSGIQLKPEEMSATSRFKAEC 199
            LFKYIIIG+T VGKS+++L FTER F +AHDMTIGVEF ++ V + G     LEIWDTAGQES+LSITRSYYRGTD CLLV+D+T R+SF+ L RWL EAR N+ANPDL +ML+ NKADL  KR ++  EG+AFAD HG+LF+E+SA+N   VE  F+ +A+R+ +    +PR +   I L       T      C
Sbjct:   11 LFKYIIIGDTEVGKSSLMLMFTERHFGEAHDMTIGVEFDSRAVKLAGGEAANLEIWDTAGQESYLSITRSYYRGTDCCLLVYDVTRRESFDHLGRWLQEARQNAANPDLVLMLVGNKADLESKRQISRAEGKAFADLHGMLFVELSAKNEKLVESVFVESAQRVLNVRRDNPRQRGPNIALAQPSRRTTDYDYCGC 206          
BLAST of mRNA_Ecto-sp13_S_contig1871.5889.1 vs. uniprot
Match: A0A7R9A5U8_9CRUS (Hypothetical protein n=1 Tax=Darwinula stevensoni TaxID=69355 RepID=A0A7R9A5U8_9CRUS)

HSP 1 Score: 220 bits (560), Expect = 1.390e-69
Identity = 109/186 (58.60%), Postives = 143/186 (76.88%), Query Frame = 0
Query:    5 LFKYIIIGNTAVGKSAILLQFTERQFRDAHDMTIGVEFGAKDVSIGDAQVKLEIWDTAGQESFLSITRSYYRGTDGCLLVFDITDRKSFEALPRWLDEARMNSANPDLSVMLIANKADLAEKRCVTTEEGQAFADKHGLLFMEMSARNAAQVERAFIGTAERIFSDLEA---HPRNKPSGIQLKPE 187
            LFKYIIIG+T VGKS +LLQFT+++F+  HD+TIGVEFGA+ ++I D Q+KL+IWDTAGQE+F SITRSYYRG  G LLV+DIT R +F  L +WLD+AR +S N ++ +MLI NK+DL  +R V  EEG+AFA +HGL+FME SA+ AA VE AFI TA+ I+  L+     P N+ +GI+L P+
Sbjct:    6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIEDKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRDTFNHLTQWLDDARQHS-NSNMVIMLIGNKSDLESRRDVKKEEGEAFAREHGLIFMETSAKTAANVEEAFISTAKEIYMKLQEGVFDPNNEANGIKLGPQ 190          
BLAST of mRNA_Ecto-sp13_S_contig1871.5889.1 vs. uniprot
Match: S4REH2_PETMA (RAB2B, member RAS oncogene family n=2 Tax=Petromyzon marinus TaxID=7757 RepID=S4REH2_PETMA)

HSP 1 Score: 219 bits (558), Expect = 3.380e-69
Identity = 109/191 (57.07%), Postives = 144/191 (75.39%), Query Frame = 0
Query:    5 LFKYIIIGNTAVGKSAILLQFTERQFRDAHDMTIGVEFGAKDVSIGDAQVKLEIWDTAGQESFLSITRSYYRGTDGCLLVFDITDRKSFEALPRWLDEARMNSANPDLSVMLIANKADLAEKRCVTTEEGQAFADKHGLLFMEMSARNAAQVERAFIGTAERIFSDLEA---HPRNKPSGIQLKPEEMSAT 192
            LFKYIIIG+T VGKS +LLQFT+++F+  HD+TIGVEFGA+ ++IG  QVKL+IWDTAGQESF SITRSYYRG  G LLV+DIT R +F  L  WL++AR +S N ++ +MLI NK+DL  +R V  EEG+AFA +HGL+FME SA+ AA VE AFI TA  I+  ++       N+ +GI++ P+++ AT
Sbjct:   11 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMIAIGGKQVKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTAWLEDARQHS-NSNMVIMLIGNKSDLESRREVKCEEGEAFAREHGLVFMETSAKTAANVEEAFINTAREIYEKIQEGVFDVNNEANGIKIGPQQLGAT 200          
BLAST of mRNA_Ecto-sp13_S_contig1871.5889.1 vs. uniprot
Match: D7FSF1_ECTSI (Rab2A, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSF1_ECTSI)

HSP 1 Score: 218 bits (556), Expect = 4.770e-69
Identity = 112/204 (54.90%), Postives = 148/204 (72.55%), Query Frame = 0
Query:    5 LFKYIIIGNTAVGKSAILLQFTERQFRDAHDMTIGVEFGAKDVSIGDAQVKLEIWDTAGQESFLSITRSYYRGTDGCLLVFDITDRKSFEALPRWLDEARMNSANPDLSVMLIANKADLAEKRCVTTEEGQAFADKHGLLFMEMSARNAAQVERAFIGTAERIFSDLEA---HPRNKPSGIQLKPEEMS-----ATSRFKAECC 200
            LFKYIIIG+T VGKS +LLQFT+++F+  HD+TIGVEFGA+ +SI + Q+KL+IWDTAGQESF SITRSYYRG  G LLV+DIT R +F  L RWL+EAR NS N ++ +MLI NK+DL  +R VTT+EG+ FA+++GL+F+E SA+ A  VE AFI TA +I+ ++ +    P N+  GI+L P         A    K+ CC
Sbjct:    6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMISIDNRQMKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEARQNS-NSNMVIMLIGNKSDLTSRRAVTTKEGEQFAEENGLIFLETSAKMATNVETAFIKTAAKIYDNILSGVYDPTNEAHGIKLGPAASLNYNNVAPPADKSSCC 208          
BLAST of mRNA_Ecto-sp13_S_contig1871.5889.1 vs. uniprot
Match: A0A7S2CHD5_9STRA (Hypothetical protein n=3 Tax=Dictyochophyceae TaxID=39119 RepID=A0A7S2CHD5_9STRA)

HSP 1 Score: 218 bits (556), Expect = 4.920e-69
Identity = 113/205 (55.12%), Postives = 152/205 (74.15%), Query Frame = 0
Query:    5 LFKYIIIGNTAVGKSAILLQFTERQFRDAHDMTIGVEFGAKDVSIGDAQVKLEIWDTAGQESFLSITRSYYRGTDGCLLVFDITDRKSFEALPRWLDEARMNSANPDLSVMLIANKADLAEKRCVTTEEGQAFADKHGLLFMEMSARNAAQVERAFIGTAERIFSDLEA---HPRNKPSGIQLK------PEEMSATSRFKAECC 200
            LFKYIIIG+T VGKS +LLQFT+++F+  HD+TIGVEFGA+ V+I + Q+KL+IWDTAGQESF SITRSYYRG  G LLV+DIT R +F  L RWL+EA+ NS NP++ +MLI NK+DL  +R V+T+EG+ FA+++GL+F+E SA+ AA VE+AFI TAE+I+  + +      N+  GI++       P+  S  S  KA CC
Sbjct:    6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDNRQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEAKQNS-NPNMVIMLIGNKSDLDHRRAVSTKEGEQFAEENGLIFLETSAKTAANVEQAFIKTAEKIYEKILSGVYDVTNEAHGIKIGMNQHSGPDNNSGRSSNKA-CC 208          
BLAST of mRNA_Ecto-sp13_S_contig1871.5889.1 vs. uniprot
Match: A0A5B8MXK9_9CHLO (Small rab-like GTPase n=2 Tax=Chlorophyta TaxID=3041 RepID=A0A5B8MXK9_9CHLO)

HSP 1 Score: 218 bits (555), Expect = 7.950e-69
Identity = 105/168 (62.50%), Postives = 135/168 (80.36%), Query Frame = 0
Query:    5 LFKYIIIGNTAVGKSAILLQFTERQFRDAHDMTIGVEFGAKDVSIGDAQVKLEIWDTAGQESFLSITRSYYRGTDGCLLVFDITDRKSFEALPRWLDEARMNSANPDLSVMLIANKADLAEKRCVTTEEGQAFADKHGLLFMEMSARNAAQVERAFIGTAERIFSDLE 172
            LFKYIIIG+T VGKS +LLQFT+++F+  HD+TIGVEFGA+ V+I   Q+KL+IWDTAGQESF SITRSYYRG  G LLV+DIT R++F +L  WLD+AR + AN ++++MLI NK+DL  +R VTTEEG+AFA +HGL+FME SA+ A  VE AFI TA +I+  +E
Sbjct:    6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNSLASWLDDARQH-ANANMTIMLIGNKSDLTHRRAVTTEEGEAFAKEHGLVFMETSAKTAHNVEEAFINTARKIYDKIE 172          
BLAST of mRNA_Ecto-sp13_S_contig1871.5889.1 vs. uniprot
Match: A0A7S3C719_9CHLO (Hypothetical protein n=2 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3C719_9CHLO)

HSP 1 Score: 218 bits (555), Expect = 7.950e-69
Identity = 105/168 (62.50%), Postives = 135/168 (80.36%), Query Frame = 0
Query:    5 LFKYIIIGNTAVGKSAILLQFTERQFRDAHDMTIGVEFGAKDVSIGDAQVKLEIWDTAGQESFLSITRSYYRGTDGCLLVFDITDRKSFEALPRWLDEARMNSANPDLSVMLIANKADLAEKRCVTTEEGQAFADKHGLLFMEMSARNAAQVERAFIGTAERIFSDLE 172
            LFKYIIIG+T VGKS +LLQFT+++F+  HD+TIGVEFGA+ V+I   Q+KL+IWDTAGQESF SITRSYYRG  G LLV+DIT R++F +L  WLD+AR + AN ++++MLI NK+DL  +R VTTEEG+AFA +HGL+FME SA+ A  VE AFI TA +I+  +E
Sbjct:    6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNSLASWLDDARQH-ANANMTIMLIGNKSDLTHRRAVTTEEGEAFAKEHGLVFMETSAKTAHNVEEAFINTARKIYDKIE 172          
BLAST of mRNA_Ecto-sp13_S_contig1871.5889.1 vs. uniprot
Match: A0A7S3NND1_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NND1_9STRA)

HSP 1 Score: 218 bits (555), Expect = 1.030e-68
Identity = 106/196 (54.08%), Postives = 141/196 (71.94%), Query Frame = 0
Query:    5 LFKYIIIGNTAVGKSAILLQFTERQFRDAHDMTIGVEFGAKDVSIGDAQV-KLEIWDTAGQESFLSITRSYYRGTDGCLLVFDITDRKSFEALPRWLDEARMNSANPDLSVMLIANKADLAEKRCVTTEEGQAFADKHGLLFMEMSARNAAQVERAFIGTAERIFSDLEAHPRNKPSGIQLKPEEMSATSRFKAEC 199
            LFKYIIIG+T VGKS+I+L FTE+ F+  HDMTIGVEF ++ V + + Q+  LEIWDTAGQES+LSITRSYYRGTD CLLV+D+T R +F  LPRWL+EAR NSANP+L +ML+ NK DL  +R ++  EG+AFAD +G+LF E+SA+   +VE  FI +A+R+ +   A+PRN    ++L+             C
Sbjct:   25 LFKYIIIGDTTVGKSSIMLMFTEQHFQTIHDMTIGVEFDSRSVKLQNGQIANLEIWDTAGQESYLSITRSYYRGTDCCLLVYDVTRRDTFVNLPRWLNEARQNSANPNLVLMLVGNKVDLEPQREISRAEGKAFADLNGMLFAELSAKYQKKVENVFIESAQRVLAVQSANPRNNSPSVKLQSGAQPKNDSIDCGC 220          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1871.5889.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIT3_ECTSI1.220e-144100.00Rab2B, RAB family GTPase n=2 Tax=Ectocarpus TaxID=... [more]
F0Y2Q0_AURAN5.710e-7556.12Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A8J2S4D0_9STRA1.400e-7056.12Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7R9A5U8_9CRUS1.390e-6958.60Hypothetical protein n=1 Tax=Darwinula stevensoni ... [more]
S4REH2_PETMA3.380e-6957.07RAB2B, member RAS oncogene family n=2 Tax=Petromyz... [more]
D7FSF1_ECTSI4.770e-6954.90Rab2A, RAB family GTPase n=2 Tax=Ectocarpus TaxID=... [more]
A0A7S2CHD5_9STRA4.920e-6955.12Hypothetical protein n=3 Tax=Dictyochophyceae TaxI... [more]
A0A5B8MXK9_9CHLO7.950e-6962.50Small rab-like GTPase n=2 Tax=Chlorophyta TaxID=30... [more]
A0A7S3C719_9CHLO7.950e-6962.50Hypothetical protein n=2 Tax=Chloropicon roscoffen... [more]
A0A7S3NND1_9STRA1.030e-6854.08Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 47..69
score: 46.76
coord: 145..167
score: 33.98
coord: 110..123
score: 39.15
coord: 29..45
score: 32.36
coord: 6..27
score: 42.52
NoneNo IPR availableSMARTSM00174rho_sub_3coord: 8..167
e-value: 6.6E-9
score: -4.6
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 6..170
e-value: 1.6E-81
score: 286.9
NoneNo IPR availableSMARTSM00176ran_sub_2coord: 11..203
e-value: 2.7E-4
score: 12.5
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 3..170
e-value: 3.5E-31
score: 119.6
NoneNo IPR availableGENE3D3.40.50.300coord: 3..200
e-value: 4.1E-58
score: 198.0
NoneNo IPR availablePANTHERPTHR24073FAMILY NOT NAMEDcoord: 3..188
NoneNo IPR availablePANTHERPTHR24073:SF972RAS-RELATED PROTEIN RABB1Bcoord: 3..188
NoneNo IPR availablePROSITEPS51419RABcoord: 1..200
score: 30.797
IPR001806Small GTPasePFAMPF00071Rascoord: 7..167
e-value: 3.5E-55
score: 186.0
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 7..160
e-value: 2.7E-22
score: 77.2
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 5..177

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1871contigEcto-sp13_S_contig1871:515..5361 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1871.5889.1mRNA_Ecto-sp13_S_contig1871.5889.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1871 463..5652 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1871.5889.1 ID=prot_Ecto-sp13_S_contig1871.5889.1|Name=mRNA_Ecto-sp13_S_contig1871.5889.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=204bp
MPTLLFKYIIIGNTAVGKSAILLQFTERQFRDAHDMTIGVEFGAKDVSIG
DAQVKLEIWDTAGQESFLSITRSYYRGTDGCLLVFDITDRKSFEALPRWL
DEARMNSANPDLSVMLIANKADLAEKRCVTTEEGQAFADKHGLLFMEMSA
RNAAQVERAFIGTAERIFSDLEAHPRNKPSGIQLKPEEMSATSRFKAECC
EGV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR005225Small_GTP-bd_dom
IPR027417P-loop_NTPase