mRNA_Ecto-sp13_S_contig18691.5878.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18691.5878.1
Unique NamemRNA_Ecto-sp13_S_contig18691.5878.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig18691.5878.1 vs. uniprot
Match: D7FRA9_ECTSI (Pyr_redox_2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRA9_ECTSI)

HSP 1 Score: 545 bits (1403), Expect = 1.040e-191
Identity = 260/268 (97.01%), Postives = 264/268 (98.51%), Query Frame = 1
Query:  100 KGSGGAAHDPEWYKTNGITILSRCQAVSVDLDQKFLKVKRVTASNGQLVFGDTIKVVYGRLLIATGARPRKIADEIKSLDNISKGLQGSCCCTRHPDVDGSPLGCTFPDRFGFGSVHYLRDFGDTVKLVHAMARVEADGQDTCKEPVVLIGGGFISCEVAAAVATYCPGMPLVMVMPGEDVMSSSGFGKEVCYFYEKQLARVGVAFAKGYRVNRLWGIEEEGCFPTLERSLQGSSMKKTFPRTFGPADPHFTDCRGVVLSNTQTGEKV 903
            +GSGG AHDPEWYKTNGITILSRCQAVSVDLDQKFLKVKRVTASNG+LVFGDTIKVVYGRLLIATGARPRKIADEIKSLDNISKGLQGSCCCTRHPDVDGSPL CTFPDRFGFGSVHYLRDFGDTVKLVHAM RVEADGQDTCKEPVVLIGGGFISCEVAAAVAT+CPGM LVMVMPGEDVMSSSGFGKEVC+FYEKQLARVGVAFAKGYRVNRLWGIEEEGCFPTLERSLQGSSMKKTFPRTFGPADPHFTDCRGVVLSNTQTGEKV
Sbjct:   50 EGSGGEAHDPEWYKTNGITILSRCQAVSVDLDQKFLKVKRVTASNGELVFGDTIKVVYGRLLIATGARPRKIADEIKSLDNISKGLQGSCCCTRHPDVDGSPLACTFPDRFGFGSVHYLRDFGDTVKLVHAMGRVEADGQDTCKEPVVLIGGGFISCEVAAAVATHCPGMQLVMVMPGEDVMSSSGFGKEVCHFYEKQLARVGVAFAKGYRVNRLWGIEEEGCFPTLERSLQGSSMKKTFPRTFGPADPHFTDCRGVVLSNTQTGEKV 317          
BLAST of mRNA_Ecto-sp13_S_contig18691.5878.1 vs. uniprot
Match: A0A7S2SVG3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SVG3_9STRA)

HSP 1 Score: 153 bits (387), Expect = 1.580e-38
Identity = 96/280 (34.29%), Postives = 138/280 (49.29%), Query Frame = 1
Query:   73 SSSDFPFVCKGSGGAAHDPEWYKTNGITILSRCQAVS-----VDLDQKFLKVKRVTASNGQLVFGDTIKVVYGRLLIATGARPRKIADEIKSLDNISKGLQGSCCCTRHPDVDGSPLGCTFPDRFGFGSVHYLRDFGDTVKLVHAMARVEADGQDTCKEPVVLIGGGFISCEVAAAVATYCPGMPLVMVMPGEDVMSS---SGFGKEVCYFYEKQLARVGVAFAKGYRVNRLWGIEEEGCFPTLERSLQGSSMKKTFPRTFGPADPHFTDCRGVVLSNTQ 888
            SSS      KGSGG   D  WY+ +G+  L +C+  +      + DQ  L V +V A   QL       VV  ++  + G R  + AD   S  + +  L          D + S +  T  +R+GFGS+H L  F D  K V A+ R E DGQ+TC +PVV++G G  + +V A +  + P +P+V+V+PG  ++ S        ++  FYE+QL +  V  A+GY V R W   E G F TLE    G  ++ T PR F    P F   RG+VL   Q
Sbjct:   76 SSSSVEEAAKGSGGVVMDATWYQGHGVEFLWQCEVTAWTKEPQEGDQGELHVLQVLADGRQLQVVCDEFVVGPQMDYSHGVRLHEGADAAASAPSPATDLHADVVI----DPENSTVSLTDSNRYGFGSIHTLTSFQDAFKFVVAVTRAEEDGQETCLDPVVVVGDGVEAMQVIAMLVKFLPDLPVVLVLPGGSLLPSLIPRAVPSDIRDFYERQLTKNNVKIARGYEVVRPWATTETGSFSTLEGPASG--LQPTRPRNFESCQPQFVQSRGLVLQRVQ 349          
BLAST of mRNA_Ecto-sp13_S_contig18691.5878.1 vs. uniprot
Match: A0A7S4A4F3_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A4F3_9STRA)

HSP 1 Score: 141 bits (356), Expect = 2.870e-34
Identity = 89/262 (33.97%), Postives = 137/262 (52.29%), Query Frame = 1
Query:  214 KRVTASNGQLVFGDTIKVVYGRLLIATGARPRKIADE----------IKSLDNISKGLQGSCCCTRHPDVDGSPLGCTFP----------DRFGFGSVHYLRDFGDTVKLVHAMARVEADGQDTCKEPVVLIGGGFISCEVAAAVATYC-PGMPLVMV------MPG---EDVMSSSGF--GKEVCYFYEKQLARVGVAFAKGYRVNRLWGIEEEGCFPTLERSLQGSSMKKTFPRTFGPAD-PHFTDCRGVVLSNTQTGEK 900
            K+VT  +   + GD  ++ Y +L+IATGAR + + D+          +    +I +G +   C                P             GFGSVHYLRD GD  K+  A++  EADGQ+TC +PVV++GGG ++ E+AA +A +    +P+ +V      MP    ED+   +G    K+V  FYE+QL + GV F + +R  RLW ++E G FPT+E      S+++T PR F P    +F+ CRG+V+ N  + E+
Sbjct:   96 KKVTYRDA--ITGDEDEITYEKLIIATGARAKVLDDQPYLWQDKHSDVVDNGSIEEGGEDIACAPAXXXXXXXXXXXPAPRIRPWCLQADKNCGFGSVHYLRDIGDAAKVSEAVSMKEADGQETCSDPVVIVGGGILTMELAAKIARFRGQKVPVNVVLSRDRIMPKVFREDIAPEAGSLGAKDVAEFYERQLVKCGVKFIREHRCLRLWDVDESGEFPTMEGPA--ISLQRTRPRRFEPLQGEYFSTCRGIVVENNHSAER 353          
BLAST of mRNA_Ecto-sp13_S_contig18691.5878.1 vs. uniprot
Match: D7FZW4_ECTSI (Pyr_redox_2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZW4_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 2.360e-31
Identity = 79/188 (42.02%), Postives = 105/188 (55.85%), Query Frame = 1
Query:  349 KGLQG----SCCCTRHPDVDGSPLGCTFPDRFGFGSVHYLRDFGDTVKLVHAMARVE----ADGQDTCKEPVVLIGGGFISCEVAAAVATYCPGMPLVMVMPGEDVMSSSGFGKEVCYFYEKQLARVGVAFAKGYRVNRLWGIEEEGCFPTLERSLQGSSMKKTFPRTFGPADPHFTDCRGVVLSNTQ 888
            K LQG    +C C RH D+ G  L    P+ +G GS HYLRD GD +KLV A++ V     A G       V L+GGG +  EVAAA+ T+ PG+  +++M G  +M    F +E+  FYE++L + GV   K     RLWG+EE+G F TL     G  +       FGPA   FT+CRGVVL NT+
Sbjct:  130 KRLQGDQDSACFCVRHSDLRGPKL--DKPEAYGLGSAHYLRDVGDCIKLVKALSTVPSGGGAGGGTGDANTVALVGGGVLCMEVAAAIVTHYPGVRPILLMSGSRLMPDF-FNQEMSDFYEEKLKQAGVRLEKNVTAERLWGLEEQGEFDTLG----GRRVH------FGPAPRGFTECRGVVLRNTE 304          
BLAST of mRNA_Ecto-sp13_S_contig18691.5878.1 vs. uniprot
Match: A0A836CH28_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH28_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 3.220e-12
Identity = 38/69 (55.07%), Postives = 48/69 (69.57%), Query Frame = 1
Query:  694 LARVGVAFAKGYRVNRLWGIEEEGCFPTLERSLQGSSMKKTFPRTFGPADPHFTDCRGVVLSNTQTGEK 900
            LAR GV  A GYRV RLW +EEEG  P LE S  G  ++K+ PR +G ADP FT  RGVVL+++Q+G +
Sbjct:  430 LARAGVCVAHGYRVERLWALEEEGDLPVLEYSPAG--LRKSTPRWWGKADPFFTTTRGVVLTDSQSGSQ 496          
BLAST of mRNA_Ecto-sp13_S_contig18691.5878.1 vs. uniprot
Match: A0A2P6VGL1_9CHLO (Monodehydroascorbate reductase n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VGL1_9CHLO)

HSP 1 Score: 76.6 bits (187), Expect = 7.730e-12
Identity = 79/252 (31.35%), Postives = 104/252 (41.27%), Query Frame = 1
Query:    7 RPALSKTCLNPGAKGSRDFSCSSSSDFP--FVCKGSGGAAHDPEWYKTNGITILSRCQAVSVDLDQKFLKVKRVTASNGQLVFGDTIKVVYGRLLIATGARPRKIADEIKSLDNISKGLQGSCCCTRHPDVDGSPLGCTFPDRFGFGSVHYLRDFGDTVKLVHAMARVEADGQDTCKEPVVLIGGGFISCEVAAAVATYCPGMPLVMVMPGEDVMSSSGFGKEVCYFYEKQLARVGVAFAKGYRVNRLWGIE 756
            RPALSK  L P A           +  P      G GG    PEWY   GI  ++  +  +VD+  K L     TA+      G+TI   YG+L++ATGARP  + D           LQG                           VH LR+  D   L+ AM   +A G     +  V +GGG+I  E AA +A    G+ + +V P ED M S  F  E+  FYE   A  G+   KG  V  L G +
Sbjct:  433 RPALSKAYLFPEAP----------ARLPGFHTSVGGGGDRQAPEWYIEQGIDFVTGTKVTAVDVAGKQL----TTAA------GETIG--YGKLIVATGARPVTLTD----FKTPGADLQG---------------------------VHVLRNVQDADALIAAMQACKAAG-----DKAVCVGGGYIGMECAACLAMN--GLDVTVVFP-EDRMMSRLFTPEIAAFYEMFYADKGIKLIKGDVVTALEGTD 623          
BLAST of mRNA_Ecto-sp13_S_contig18691.5878.1 vs. uniprot
Match: A0A2H5UW21_9ARCH (Putidaredoxin reductase n=1 Tax=archaeon HR01 TaxID=2035437 RepID=A0A2H5UW21_9ARCH)

HSP 1 Score: 59.3 bits (142), Expect = 2.840e-6
Identity = 54/205 (26.34%), Postives = 87/205 (42.44%), Query Frame = 1
Query:  136 YKTNGITILSRCQAVSVDLDQKFLKVKRVTASNGQLVFGDTIKVVYGRLLIATGARPRKIADEIKSLDNISKGLQGSCCCTRHPDVDGSPLGCTFPDRFGFGSVHYLRDFGDTVKLVHAMARVEADGQDTCKEPVVLIGGGFISCEVAAAVATYCPGMPLVMVMPGEDVMSSSGFGKEVCYFYEKQLARVGVAFAKGYRVNRLWG 750
            Y  N + +L   +AV +++ +K      VT ++G+       K+ YG+LL+ATG R RK+A E   LD I                                  +YLR   D+ ++  A+A              V++GGGFI CEVA+A+  Y  G+ + +V    D++S +   +E   +   +   +GV    G  V R  G
Sbjct:   79 YLQNNVDMLLGNRAVEINVSEK-----TVTLADGR-------KINYGKLLLATGGRVRKLAVEGGDLDGI----------------------------------YYLRTIEDSERIKAALASAGK---------AVVVGGGFIGCEVASAL--YERGLEVTIVEVSNDLLSRA-LDQETASWITSRFREMGVKVRTGISVTRFLG 225          
BLAST of mRNA_Ecto-sp13_S_contig18691.5878.1 vs. uniprot
Match: A0A191WDP7_9MICO (Uncharacterized protein n=1 Tax=Agromyces aureus TaxID=453304 RepID=A0A191WDP7_9MICO)

HSP 1 Score: 58.5 bits (140), Expect = 5.240e-6
Identity = 69/248 (27.82%), Postives = 99/248 (39.92%), Query Frame = 1
Query:    7 RPALSKTCLNPGAKGSRDFSCSSSSDFPFVCKGSGGAAHDPEWYKTNGITILSRCQAVSVDLDQKFLKVKRVTASNGQLVFGDTIKVVYGRLLIATGARPRKIADEIKSLDNISKGLQGSCCCTRHPDVDGSPLGCTFPDRFGFGSVHYLRDFGDTVKLVHAMARVEADGQDTCKEPVVLIGGGFISCEVAAAVATYCPGMPLVMVMPGEDVMSSSGFGKEVCYFYEKQLARVGVAFAKGYRVNRLWG 750
            RP LSK  LN         S ++SS +P          HD  WY  +GI +     AV++D     ++V+     +  L         Y RLL+ATGARPR+                                  T P   G G VH LR   D+ +L  A+ R +          VV++GGG+I  EVAAA   Y  G  + +V+ GE+ + ++  G+ V   +     + GV    G  V  L G
Sbjct:   45 RPPLSKGYLNG--------SDAASSVYP----------HDRRWYGRHGIDLRLGTSAVALDPAAHTVEVEGADGVHATLD--------YDRLLLATGARPRRF---------------------------------TGPGA-GVGGVHVLRTLPDSTRLRTALRRGD--------RRVVVVGGGWIGLEVAAAARGY--GNEVTVVVRGEEPLEAA-IGRGVGSMFRGLHEQHGVVIRGGAAVTALRG 221          
BLAST of mRNA_Ecto-sp13_S_contig18691.5878.1 vs. uniprot
Match: A0A1R1CUK1_9BACL (Ferredoxin reductase n=2 Tax=Paenibacillus sp. FSL H8-0548 TaxID=1920422 RepID=A0A1R1CUK1_9BACL)

HSP 1 Score: 57.4 bits (137), Expect = 1.220e-5
Identity = 58/201 (28.86%), Postives = 89/201 (44.28%), Query Frame = 1
Query:  124 DPEWYKTNGITILSRCQAVSVDLDQKFLKVKRVTASNGQLVFGDTIKVVYGRLLIATGARPRKIADEIKSLDNISKGLQGSCCCTRHPDVDGSPLGCTFPDRFGFGSVHYLRDFGDTVKLVHAMARVEADGQDTCKEPVVLIGGGFISCEVAAAVATYCPGMPLVMVMPGEDVMSSSGFGKEVCYFYEKQLARVGVAFAKG 726
            D +  + + I ++  C+AVS+D +   ++++     NGQ        + Y RLL+ATGA+PR+          +S  L GS                    RF   SV YLR FGD + L     R+E   +      VV+IGGGFI  EVAA+ A  C G  + ++  G  ++   G  + +    + +    GV F  G
Sbjct:   60 DNKQLEEHRIELMKGCKAVSIDKNNHSVQLE-----NGQ-------NINYERLLLATGAQPRR----------LSIPLSGS------------------QSRFDTSSVLYLRSFGDALSL---RRRLEPGKR------VVIIGGGFIGLEVAAS-AREC-GCEVTVIEAGPRILMR-GVPEAIAAIVDARHRSAGVQFKLG 208          
BLAST of mRNA_Ecto-sp13_S_contig18691.5878.1 vs. uniprot
Match: A0A533WXL7_9ARCH (Oxidoreductase n=5 Tax=Thaumarchaeota archaeon TaxID=2026795 RepID=A0A533WXL7_9ARCH)

HSP 1 Score: 57.4 bits (137), Expect = 1.300e-5
Identity = 44/155 (28.39%), Postives = 65/155 (41.94%), Query Frame = 1
Query:  130 EWYKTNGITILSRCQAVSVDLDQKFLKVKRVTASNGQLVFGDTIKVVYGRLLIATGARPRKIADEIKSLDNISKGLQGSCCCTRHPDVDGSPLGCTFPDRFGFGSVHYLRDFGDTVKLVHAMARVEADGQDTCKEPVVLIGGGFISCEVAAAVAT 594
            E+Y+   I ++S  +A  +D   + +K++            D  +V +GRLL+ATG RPR +                         + GS L          G +HYLR   D  ++  AM +             V++GGGFI CEVAAA AT
Sbjct:  107 EFYENQKIEVISGKRATKLDKSGRVVKLE------------DDTEVAFGRLLLATGGRPRILP------------------------LPGSNL----------GGIHYLRTIDDCERIKEAMKKARN---------AVVVGGGFIGCEVAAAFAT 206          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18691.5878.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRA9_ECTSI1.040e-19197.01Pyr_redox_2 domain-containing protein n=1 Tax=Ecto... [more]
A0A7S2SVG3_9STRA1.580e-3834.29Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S4A4F3_9STRA2.870e-3433.97Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
D7FZW4_ECTSI2.360e-3142.02Pyr_redox_2 domain-containing protein n=1 Tax=Ecto... [more]
A0A836CH28_9STRA3.220e-1255.07Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A2P6VGL1_9CHLO7.730e-1231.35Monodehydroascorbate reductase n=1 Tax=Micractiniu... [more]
A0A2H5UW21_9ARCH2.840e-626.34Putidaredoxin reductase n=1 Tax=archaeon HR01 TaxI... [more]
A0A191WDP7_9MICO5.240e-627.82Uncharacterized protein n=1 Tax=Agromyces aureus T... [more]
A0A1R1CUK1_9BACL1.220e-528.86Ferredoxin reductase n=2 Tax=Paenibacillus sp. FSL... [more]
A0A533WXL7_9ARCH1.300e-528.39Oxidoreductase n=5 Tax=Thaumarchaeota archaeon Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18691contigEcto-sp13_S_contig18691:444..2750 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score542.7
Seed ortholog evalue1.1e-151
Seed eggNOG ortholog2880.D7FRA9
Preferred nameMDAR1
Model size921
KEGG koko:K08232
KEGG ReactionR00095
KEGG Pathwayko00053,ko01100,map00053,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0001101,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005777,GO:0005778,GO:0005829,GO:0006950,GO:0006970,GO:0008144,GO:0008150,GO:0008152,GO:0009056,GO:0009266,GO:0009409,GO:0009414,GO:0009415,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009605,GO:0009607,GO:0009608,GO:0009610,GO:0009620,GO:0009628,GO:0009636,GO:0009651,GO:0009719,GO:0009725,GO:0009753,GO:0009941,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010043,GO:0010319,GO:0016020,GO:0016491,GO:0016651,GO:0016655,GO:0016656,GO:0016999,GO:0017001,GO:0017076,GO:0017144,GO:0030554,GO:0031090,GO:0031903,GO:0031967,GO:0031975,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0042221,GO:0042579,GO:0042737,GO:0042743,GO:0042744,GO:0043167,GO:0043168,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043900,GO:0043903,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0046686,GO:0050789,GO:0050896,GO:0051186,GO:0051187,GO:0051704,GO:0051707,GO:0051716,GO:0055114,GO:0065007,GO:0070887,GO:0072593,GO:0097159,GO:0097237,GO:0097367,GO:0098588,GO:0098754,GO:0098805,GO:0098869,GO:1901265,GO:1901363,GO:1901700,GO:1990748
Exons6
EggNOG free text desc.monodehydroascorbate reductase (NADH) activity
EggNOG OGsCOG0446@1,KOG1336@2759
Ec32 ortholog descriptionMonodehydroascorbate reductase-like
Ec32 orthologEc-26_002470.1
EC1.6.5.4
Cds size921
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18691.5878.1prot_Ecto-sp13_S_contig18691.5878.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18691 444..2750 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462958.3489435-CDS-Ecto-sp13_S_contig18691:443..6621681462958.3489435-CDS-Ecto-sp13_S_contig18691:443..662Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18691 444..662 -
1681462958.3633025-CDS-Ecto-sp13_S_contig18691:835..10181681462958.3633025-CDS-Ecto-sp13_S_contig18691:835..1018Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18691 836..1018 -
1681462958.373321-CDS-Ecto-sp13_S_contig18691:1318..14771681462958.373321-CDS-Ecto-sp13_S_contig18691:1318..1477Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18691 1319..1477 -
1681462958.382026-CDS-Ecto-sp13_S_contig18691:1697..17931681462958.382026-CDS-Ecto-sp13_S_contig18691:1697..1793Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18691 1698..1793 -
1681462958.3936367-CDS-Ecto-sp13_S_contig18691:2243..23601681462958.3936367-CDS-Ecto-sp13_S_contig18691:2243..2360Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18691 2244..2360 -
1681462958.402331-CDS-Ecto-sp13_S_contig18691:2603..27501681462958.402331-CDS-Ecto-sp13_S_contig18691:2603..2750Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18691 2604..2750 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18691.5878.1

>prot_Ecto-sp13_S_contig18691.5878.1 ID=prot_Ecto-sp13_S_contig18691.5878.1|Name=mRNA_Ecto-sp13_S_contig18691.5878.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=307bp
MHRPALSKTCLNPGAKGSRDFSCSSSSDFPFVCKGSGGAAHDPEWYKTNG
ITILSRCQAVSVDLDQKFLKVKRVTASNGQLVFGDTIKVVYGRLLIATGA
RPRKIADEIKSLDNISKGLQGSCCCTRHPDVDGSPLGCTFPDRFGFGSVH
YLRDFGDTVKLVHAMARVEADGQDTCKEPVVLIGGGFISCEVAAAVATYC
PGMPLVMVMPGEDVMSSSGFGKEVCYFYEKQLARVGVAFAKGYRVNRLWG
IEEEGCFPTLERSLQGSSMKKTFPRTFGPADPHFTDCRGVVLSNTQTGEK
VRARGF*
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mRNA from alignment at Ecto-sp13_S_contig18691:444..2750-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18691.5878.1 ID=mRNA_Ecto-sp13_S_contig18691.5878.1|Name=mRNA_Ecto-sp13_S_contig18691.5878.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2307bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18691:444..2750- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCACAGGCCGGCACTGTCCAAGACATGCCTTAATCCGGGGGCGAAGGG GTCGCGAGATTTTTCCTGCAGCTCCTCCTCCGATTTCCCCTTCGTCTGCA AGGGGTCTGGCGGCGCGGCCCACGACCCGGAGTGGTACAAGACTAATGTG AGTACGGAAACGATGGAGCATCGGGGAGACCGTTGGCGCTCCCAGTTCTC CCTTCTATGATGGTTGCTGCTGGAATAGCTACGCGGCTACACCACTGGCG CTCTTCGCATAGCAAGACGACAAAGAACTTCAATTTCGCCGTAAATTTGT TCTACTTGGTTGGTGCTTGGTCTCATGTCGTGCCCATGCTCTGACCAGCG CAGGCTTGTCTCGCATGACAATCCTTGTCCTTGACCGCAGGGCATCACCA TCTTGTCCAGGTGTCAGGCAGTTTCCGTTGATCTGGACCAAAAGTTTCTG AAAGTCAAGAGAGTCACCGCCAGCAATGGTCAACTCGTCTTCGGGGATAC AATCAAGGTATGTGTAAGTTCCAGGGCATTACACCGGGCTTCGCGATAGG TTCCGATTGTGCCAACGTAGATGACAGCTGTCTCCTTTTTAATTGTCCAT GAGTGTACTTTGCCCTCCAATGGATGTGGTCAGTCATCTGTAGCATTGCG TGGCCCACACATTGTCTCTCAGGTTTCTCATCTATTGTATGCGTGCGGAT TCGACGGAATATGTGCGATGGCTGTGTCCGATTGAATGTTGGCTTCGTTT GTTCACCTTTGCATGTACCGAGCATGGTCGTTTTTCATTTTCTTCTTGCC TGTGACAGCAAGAACACGGAGGCGTCTGTGACATCGTTTACCTAGTTCTA CCGCAATGGCAACTTGAAGGAATCGAATCCTCTCGAAGGATAAAAACGAA CAGATGGACGATCAAGAAGACACCGCCTTCGAACACCCTAAACTGCCGGT CCTGCAGGTGGTGTACGGGCGATTATTGATCGCTACCGGGGCAAGACCTC GGAAGATCGCTGACGAAATCAAATCCCTGGACAACATCTCAAAAGGCTTG CAGGTAGGCCTTCAAAAGACGTGCTGGTGGCTTCCGGCAGGTACCAGGTT AGTTAGGCGATGCAATAAAAGATAAAAACCTCATACCTTGGAGGGTATCC TAGCCATTTGGTGATTTTCCAACTCAAGTATTCATCTTCAACCGATGTGG CGGATTGCCTTCGCTTGAACAAGAAGGCAAAGTCCGTCGTGAGTCAATGG TTCTGATACACCCAATCCCCCAGGGAAGTTGCTGCTGCACTCGCCATCCC GACGTCGATGGATCCCCGCTGGGGTGTACTTTTCCTGACCGGTTCGGCTT TGGGTCGGTCCATTACTTACGCGACTTCGGAGATACCGTGAAGCTCGTCC ATGCTATGGCCAGAGTTGAGGCGGACGGGCAGGTAGGCTGGATGATGCGG TTATACGTGAACGAGTCCATTCTGGTTTGAGTTATGTCGGATAGGTGATG GAAGATTAGACGACTTGTCCTCCCGAACATGGGCTTGGTGTAACTCATGT ATTACGTGTTTTTCAGCTTAAAAATCGAAGAATGCACCAGCAAAAAACAT GGTGCGTCTGGCAAAACACTGCACAGCAGAGAGTAGCTGACTTGATGGCA CTTTCCTGATTCTTACCAACTTTTAAGAGTTCTTGATGGTGATGCAATGT TCTTGCTTGTTTTACAACGTGATGGCACACAGGACACCTGCAAGGAACCT GTGGTCTTGATCGGCGGTGGCTTCATATCGTGTGAAGTTGCTGCCGCTGT TGCAACATATTGCCCTGGCATGCCGCTGGTCATGGTGATGCCTGGGGAGG ACGTTATGTCAAGTTCTGGATTCGGCAAAGAAGTGTGCTATTTCTACGAA AAACAACTTGCGAGGGTAAGCACCAGGCGTTTTTGAGCTTGGACTTCCCT CGACACTTCATCCGCTACCTGCATTGCCCATCTGACCACCGTGAGCTCGT TGGTTGGCGAGTTGCCGCCTCTTCCCTGTCCGCCAATGTAGTCACTGCCC CCCCCCCCCCCCCCCTCCACTGTCCGTGGTTCTCGAAGGTTGGTGTTGCA TTCGCCAAGGGCTATCGTGTCAACCGCCTCTGGGGCATTGAAGAAGAAGG GTGCTTTCCTACTTTGGAGCGGTCGCTGCAGGGGTCTTCCATGAAGAAAA CGTTCCCGCGGACGTTCGGCCCGGCCGACCCGCACTTCACAGACTGTCGA GGGGTCGTGCTTTCGAACACACAGACTGGCGAGAAGGTGAGAGCTCGGGG CTTCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18691:444..2750-

>mRNA_Ecto-sp13_S_contig18691.5878.1 ID=mRNA_Ecto-sp13_S_contig18691.5878.1|Name=mRNA_Ecto-sp13_S_contig18691.5878.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=921bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18691:444..2750- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCACAGGCCGGCACTGTCCAAGACATGCCTTAATCCGGGGGCGAAGGG
GTCGCGAGATTTTTCCTGCAGCTCCTCCTCCGATTTCCCCTTCGTCTGCA
AGGGGTCTGGCGGCGCGGCCCACGACCCGGAGTGGTACAAGACTAATGGC
ATCACCATCTTGTCCAGGTGTCAGGCAGTTTCCGTTGATCTGGACCAAAA
GTTTCTGAAAGTCAAGAGAGTCACCGCCAGCAATGGTCAACTCGTCTTCG
GGGATACAATCAAGGTGGTGTACGGGCGATTATTGATCGCTACCGGGGCA
AGACCTCGGAAGATCGCTGACGAAATCAAATCCCTGGACAACATCTCAAA
AGGCTTGCAGGGAAGTTGCTGCTGCACTCGCCATCCCGACGTCGATGGAT
CCCCGCTGGGGTGTACTTTTCCTGACCGGTTCGGCTTTGGGTCGGTCCAT
TACTTACGCGACTTCGGAGATACCGTGAAGCTCGTCCATGCTATGGCCAG
AGTTGAGGCGGACGGGCAGGACACCTGCAAGGAACCTGTGGTCTTGATCG
GCGGTGGCTTCATATCGTGTGAAGTTGCTGCCGCTGTTGCAACATATTGC
CCTGGCATGCCGCTGGTCATGGTGATGCCTGGGGAGGACGTTATGTCAAG
TTCTGGATTCGGCAAAGAAGTGTGCTATTTCTACGAAAAACAACTTGCGA
GGGTTGGTGTTGCATTCGCCAAGGGCTATCGTGTCAACCGCCTCTGGGGC
ATTGAAGAAGAAGGGTGCTTTCCTACTTTGGAGCGGTCGCTGCAGGGGTC
TTCCATGAAGAAAACGTTCCCGCGGACGTTCGGCCCGGCCGACCCGCACT
TCACAGACTGTCGAGGGGTCGTGCTTTCGAACACACAGACTGGCGAGAAG
GTGAGAGCTCGGGGCTTCTGA
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