mRNA_Ecto-sp13_S_contig1869.5875.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1869.5875.1
Unique NamemRNA_Ecto-sp13_S_contig1869.5875.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1869.5875.1 vs. uniprot
Match: D7FQ63_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ63_ECTSI)

HSP 1 Score: 649 bits (1673), Expect = 4.990e-230
Identity = 418/506 (82.61%), Postives = 423/506 (83.60%), Query Frame = 1
Query:    1 MDEVERQAAARIQAVQRGRLARFSADRRRRSLVRREATARWEREQAVIKIQAACRGTRGREETALYRXXXXXXXXXXXXXXXXXXRKDFNRKSPGGLPLDRADIKKGLHTLGRNPHDLRLCYIGLMAANAGVSNINSIVEFPLLQTVDLSGNCISSTKPLSRXXXXXXXXXXXXXXTSLLDYELFEGEDFSWQASQDWLHDWRAEVVRSSSMLHRVNVSYNRQDPWIIIDSLRDLSHHRNLQHLDLSHNAIEVLEGLSXXXXXXXXXXXXXXXXXXXXXXGLPLVELHLDHNYIEKAENVGSDKLASLRILRLGFNDIGNLANLKTCLSLVTLDVRFNKVSAVRQVEYLQECQFLHTLVLEGNPMDRLEAYRARVIFRLQGLMLLDRNKISPEEKVKAVNLMGDDESDLPHRKQVFHKHLPEAEFTNTLPPFREPEGPPAPQHDPAEKPEIVSGSDSPEEGKFVFEDSTVFIVDPPAPTAVSREAISCVKHVMTASSYGFSRGALQ 1518
            MDE+E QAAARIQAVQRGRLARFSADRRRRSLVRREATARWEREQAVIKIQAACRGTRGREETALYRXXXXXXXXXXXXXXXXXXRKDFNRKSPGGLPLDRADIKKGLHTLGRNPHDLRLCYIGLMAANAGVSNINSI EFPLLQTVDLSGNCISSTKPL  XXXXXXXXXXXXXX                                                    IDSLRDLSHHRN                  XXXXXXXXXXXXXXXXXXXXXXGLPLVELHLDHNYIEKAENVGS KLASLRILRLGFNDIGNL+NLKTCLSLVTLDVRFNKVSAVRQVEYLQECQFLHTLVLEGNPMDRLEAYRARVIFRLQGLMLLDRNKISPEEKVKAVNLMGD+ESDLPHRKQVFHKHLP AEFTNTLPPFREPEGPPAP+ DPAEKPE VSGSDSPEEG FVFEDSTV IVDPPAPT VSREAISCV+HVMTASSYGFS  ALQ
Sbjct:    1 MDEMEGQAAARIQAVQRGRLARFSADRRRRSLVRREATARWEREQAVIKIQAACRGTRGREETALYRXXXXXXXXXXXXXXXXXXRKDFNRKSPGGLPLDRADIKKGLHTLGRNPHDLRLCYIGLMAANAGVSNINSIAEFPLLQTVDLSGNCISSTKPLXXXXXXXXXXXXXXXXXX--------------------------------------------------IDSLRDLSHHRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLPLVELHLDHNYIEKAENVGSGKLASLRILRLGFNDIGNLSNLKTCLSLVTLDVRFNKVSAVRQVEYLQECQFLHTLVLEGNPMDRLEAYRARVIFRLQGLMLLDRNKISPEEKVKAVNLMGDEESDLPHRKQVFHKHLPGAEFTNTLPPFREPEGPPAPEPDPAEKPETVSGSDSPEEGGFVFEDSTVSIVDPPAPTVVSREAISCVEHVMTASSYGFSSVALQ 456          
BLAST of mRNA_Ecto-sp13_S_contig1869.5875.1 vs. uniprot
Match: A0A6H5KB11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB11_9PHAE)

HSP 1 Score: 261 bits (667), Expect = 4.090e-81
Identity = 143/168 (85.12%), Postives = 143/168 (85.12%), Query Frame = 1
Query:    1 MDEVERQAAARIQAVQRGRLARFSADRRRRSLVRREATARWEREQAVIKIQ------AACRGTRGREETALYRXXXXXXXXXXXXXXXXXXRKDFNRKSPGGLPLDRADIKKGLHTLGRNPHDLRLCYIGLMAANAGVSNINSIVEFPLLQTVDLSGNCISSTKPLSR 486
            MDEVE QAAARIQAVQRGRLARFSADRRRRSLVRREATARWEREQAVIKIQ      AACRGTRGREETALYR                  RKDFNRKSPGGLPLDRADIKKGLHTLGRNPHDLRLCYIGLMAANAGVSNINSIVEFPLLQTVDLSGNCISSTKPLSR
Sbjct:    1 MDEVEGQAAARIQAVQRGRLARFSADRRRRSLVRREATARWEREQAVIKIQLCLAFQAACRGTRGREETALYREQQAAASKIQARIRGDKARKDFNRKSPGGLPLDRADIKKGLHTLGRNPHDLRLCYIGLMAANAGVSNINSIVEFPLLQTVDLSGNCISSTKPLSR 168          
BLAST of mRNA_Ecto-sp13_S_contig1869.5875.1 vs. uniprot
Match: A0A835YJY7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJY7_9STRA)

HSP 1 Score: 186 bits (472), Expect = 4.490e-49
Identity = 154/376 (40.96%), Postives = 203/376 (53.99%), Query Frame = 1
Query:  283 GGLPLDRADIKKGLHTLGRNPHDLRLCYIGLMAANAGVSNINSIVEFPLLQTVDLSGNCISSTKPLSRXXXXXXXXXXXXXXTSLLDYELFEGED------------------FSWQASQDW--LHDWRAEVVRSSSMLHRVNVSYNRQDPWIIIDSLRDLSHHRNLQHLDLSHNAIEVLEGLSXXXXXXXXXXXXXXXXXXXXXXGLPLVELHLDHNYIEKAENVGSDKLAS-------LRILRLGFNDIGNLANLKTCLSLVTLDVRFNKVSAVRQVEYLQECQFLHTLVLEGNPMDRLEAYRARVIFRLQGLMLLDRNKISPEEKVKAVNLMGDDESDLPHRKQVFHKHLPE--AEFTNTLPPFREPEGPPAP 1323
            GG  LDRA +K+GLHTLGR PH LR C  G      G+ ++ ++ ++PLLQT+D+S N ++   PL                T +LD+E+  G D                   +  A   W  L DWR+  VR+ S L   ++S N       I ++RDLS HRNL  L L+           XXXXXXXXXXXXXXXXXXXXX GLPLVEL L            + +  +       LR L L  N I  L+ L+ C SLVTLD+  N +SA+RQVE+L++C  L  L L        E YR RV+ RLQGL LLD   +SP+EKV+A+NL G + SDL +R+ +F     E  A++ + LPP++EPE  PAP
Sbjct:  136 GGTTLDRAAVKRGLHTLGRAPHSLRHCLTGCDLRGLGLRDVAALSDWPLLQTLDVSDNALTELAPLCALPFLCELHAARNGVTEVLDFEVLRGRDQTIALNAYPHVLCAANGTHARSADMPWEDLLDWRSSAVRAESALALADLSENA------IAAMRDLSPHRNLHTLLLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGLPLVELDLXXXXXXXXXXXAAPESGNGCAPPLLLRRLNLADNFIIELSGLQRCASLVTLDLSGNALSALRQVEWLRDCAVLRELSLARTAAAEQEWYRLRVLLRLQGLTLLDSEPVSPQEKVEALNLAGGEGSDLANRQALFRGTFQEHEAQWCDLLPPYQEPE--PAP 503          
BLAST of mRNA_Ecto-sp13_S_contig1869.5875.1 vs. uniprot
Match: A0A8J2T0T5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T0T5_9STRA)

HSP 1 Score: 124 bits (311), Expect = 2.010e-26
Identity = 135/478 (28.24%), Postives = 187/478 (39.12%), Query Frame = 1
Query:   13 ERQAAARIQAVQRGRLARFSADRRRRSLVRREATARWEREQAVIKIQAACRGTRGREETALYRXXXXXXXXXXXXXXXXXXRKDFNRKSPGGLPLDRADIKKGLHTLGRNPHDLRLCYIGLMAANAGVSNINSIVEFPLLQTVDLSGNCISSTKPLSRXXXXXXXXXXXXXXTSLLDYELFEGEDFSWQASQDWLHDWRAEVVRSSSMLHRVNVSYNRQDPWIIIDSLRDLSHHRNLQHLDLSHNAIEVLEGLSXXXXXXXXXXXXXXXXXXXXXXGLPLVELHLDHNYIEKAENVGSDKLASLRILRLGFNDIGNLANLKTCLSLVTLDV---------------------------------------------RFNKVSAVRQVEYLQECQFLHTLVLEGNPMDRLEAYRARVIFRLQGLMLLDRNKISPEEKVKAVNLMGDDESDLPHRKQVFHKHLPEA-EFTNTLPPFREPE 1308
            E  AA R+QA+ RG         R R  V R  T + EREQA   +Q   RG     E    R                  R+   R   G   L+R DI +GLHTLGR   DL+  Y+G   +   + +I+ +  +  LQ +D+S N ++S  PL                                         +   +  S + L + ++   R  P     +L       NL  +DLS N IEVL   S                         L +  LD N +   E  G   L+ L+IL +  ND+  ++      +LV LDV                                             R N +  VR+VE+L+      +L+L+GNP   L  YR RV+FRLQ L +LD   +S ++K+KAVNL G DESDL HR++ F KH   A EF + LPPF EPE
Sbjct:    9 EEDAATRLQAISRGH--------RDRQAVERTQTLKKEREQAASLLQTRQRGRIACREVDERREQTQAATSIGRIYRGKVTRRA--RVDRGPRSLERDDIAQGLHTLGRTA-DLKHAYLGCSVSGLQLVDIDVLQSYEHLQALDVSCNNLTSLSPLEHLP-------------------------------------YLTRLNASGNKLSQFDLEIPRNVPGEKAWTLGRKHAGSNLIEVDLSDNDIEVLGEQSTHRR---------------------LEKFVLDGNRMY--EITGLQNLSRLKILSMRNNDLSYVSXXXXXSALVELDVGGNRLTTMGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARDNCIEKVREVEFLERLPLFSSLLLQGNPCSDLPFYRRRVVFRLQQLRVLDGIAVSSDDKIKAVNLHGGDESDLKHRRETFRKHFGSALEFEDPLPPFVEPE 415          
BLAST of mRNA_Ecto-sp13_S_contig1869.5875.1 vs. uniprot
Match: A0A3F2RVW1_9STRA (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RVW1_9STRA)

HSP 1 Score: 104 bits (259), Expect = 7.900e-21
Identity = 95/344 (27.62%), Postives = 153/344 (44.48%), Query Frame = 1
Query:  310 IKKGLHTLGRNPHDLRLCYIGLMAANAGVSNINSIVEFPLLQTVDLSGNCISSTKPLSRXXXXXXXXXXXXXXTSLLDYELFE-GEDFSWQASQDWLHDW-RAEVVRSSSMLHRVNVSYNRQDPWI--------IIDSLRDLSHHRNLQHLDLSHNAIEVLEGLSXXXXXXXXXXXXXXXXXXXXXXGLPLVE-LHLDHNYIEKAENVGSDKLASLRILRLGFNDIGNLANLKTCLSLVTLDVRFNKVSAVRQVEYLQECQFLHTLVLEGNPMDRLEA----YRARVIFRLQGLMLLDRNKISPEEKVKAVNLMGDDESDLPHRKQVFHKHLPEAEFTNTLPPF 1296
            + K L  LGRNP      Y      +  +S+I  I EFP +Q +  + N + +  PL                T +LD+++ +   D +W     W+    R   +  + ++       +   P++         I+ +  +S  R L+ LDLSHN +  + GL                       GL  +E L L HN +   ++ G   L  L  L +  N +  L++L  C+ L  L++ +N+V+ + ++  L   ++L  L L G P+  ++     YRARVI RL  L  LD   ++ +EKVKA+ + G   SDL  R+QV  K+LP  EF N LPP 
Sbjct:    2 VSKRLGVLGRNPFTQAHIYTTATLTDLRLSDIEVIREFPHIQHLVCNQNELKTLDPLKHIPLLLTLDAEENQLTEVLDFQVPKCTPDNAWVDGARWIGSLLRKATLNRNRIVSMPTHELSTTHPFLQELHLAFNTIEEISGVSQLRFLRVLDLSHNRLSSIRGL---------------VANEDSSHGLQALETLLLSHNQLTAIDD-GVAFLPRLTHLDVAHNQLKTLSSLGECVQLQRLELAYNRVADINELNCLANLRYLGQLSLGGCPLVEIQVSLIFYRARVIRRLLQLQKLDDETVTSKEKVKALVMHG---SDLDARRQVAAKYLPGQEFANFLPPL 326          
BLAST of mRNA_Ecto-sp13_S_contig1869.5875.1 vs. uniprot
Match: A0A3R7K2Y1_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7K2Y1_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 3.930e-19
Identity = 93/341 (27.27%), Postives = 151/341 (44.28%), Query Frame = 1
Query:  310 IKKGLHTLGRNPHDLRLCYIGLMAANAGVSNINSIVEFPLLQTVDLSGNCISSTKPLSRXXXXXXXXXXXXXXTSLLDYELFE-GEDFSWQASQDWLHDW-RAEVVRSSSMLHRVNVSYNRQDPWI--------IIDSLRDLSHHRNLQHLDLSHNAIEVLEGLSXXXXXXXXXXXXXXXXXXXXXXGLPLVE-LHLDHNYIEKAENVGSDKLASLRILRLGFNDIGNLANLKTCLSLVTLDVRFNKVSAVRQVEYLQECQFLHTLVLEGNPMDRLEA----YRARVIFRLQGLMLLDRNKISPEEKVKAVNLMGDDESDLPHRKQVFHKHLPEAEFTNTL 1287
            + K L  LGRNP      Y      +  +S+I  I EFP +Q +  + N + +  PL                T +LD+++ +   D +W     W+    R   +  + ++       +   P++         I+ +  +S  R L+ LDLSHN +  + GL                       GL  +E L L HN +   ++ G   L  L  L +  N +  L++L  C+ L  L++ +N+V+ + ++  L   ++L  L L G P+  ++     YRARVI RL  L  LD   ++ +EKVKA+ + G   SDL  R+QV  K+LP  EF N L
Sbjct:    2 VSKRLGVLGRNPFTQAHIYTTATLTDLRLSDIEVIREFPHIQHLVCNQNELKTLDPLKHIPLLLTLDAEENQLTEVLDFQVPKCTPDNAWVDGARWIGSLLRKATLNRNRIVSMPTHELSTTHPFLQELHLAFNTIEEISGVSQLRFLRVLDLSHNRLSSIRGL---------------VANEDSSRGLQALETLLLSHNQLTVIDD-GVAFLPRLTHLDVAHNQLKTLSSLGECVQLQRLELAYNRVADINELNCLANLRYLGQLSLGGCPLVEIQVSLIFYRARVIRRLLQLQKLDDEIVTSKEKVKALVMHG---SDLDARRQVAAKYLPGQEFANFL 323          
BLAST of mRNA_Ecto-sp13_S_contig1869.5875.1 vs. uniprot
Match: A0A7S2BD69_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BD69_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 4.590e-16
Identity = 63/165 (38.18%), Postives = 82/165 (49.70%), Query Frame = 1
Query:  841 GLPLVELHLDHNYIEKAENVGSDKLASLRILRLGFNDIGNLANLKTCLSLVTLDVRFNKVSAVRQVEYLQECQFLHTLVLEGNPMDRL---------EAYRARVIFRLQGLMLLDRNKISPEEKVKAVNLMGDDESDLPHRKQVFHKHLPEAEFTNTLPPFREPE 1308
            GLPL EL LD+N I+  EN+  +K+  L                                 AVR+VEY+Q    L +LVL GNP+  +           YR RV+ RLQGL  LD    + EEK KA+NL G D SD+ +R +VF K  P+ E++NTLP F E E
Sbjct:   10 GLPLTELALDNNKIKFIENL--EKVPCLAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAVREVEYVQNLPLLCSLVLTGNPVAPVVIPEDPSLPNFYRLRVLVRLQGLTSLDGKLATAEEKTKAMNLHGGDNSDVLNRARVFKKVFPDMEYSNTLPCFVETE 172          
BLAST of mRNA_Ecto-sp13_S_contig1869.5875.1 vs. uniprot
Match: A0A5D6YMV9_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YMV9_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 5.160e-16
Identity = 109/347 (31.41%), Postives = 158/347 (45.53%), Query Frame = 1
Query:  295 LDRADIKKGLHTLGRNPHDLRLCYIGLMAANAGVSNINSIVEFPLLQTVDLSGNCISSTKPLSRXXXXXXXXXXXXXXTSLLDYELFE-GEDFSWQASQDWLHDWRAEVVRSSSMLHRVNVSYNRQDPWIIIDSLRDLSH-HRNLQHLDLSHNAIEVLEGLSXXXXXXXXXXXXXXXXXXXXXXGLPLVELHLDHNYIEKAENVGSDKLASLRILRLGFND------------IGNLANLKTCLSLVTLDVRFNKVSAVRQVEYLQECQFLHTLVLEGNPMDRLEA--YRARVIFRLQGLMLLDRNKISPEEKVKAVNLMGDDESDLPHRKQVFHKHLPEAEFTNTL 1287
            L RA ++  L  LGRNP      +         +++I+++ EFP LQ V  S N I++  PL+               T +LD++        +W     W+           S+L R ++S NR      I+ +RDLS  H+ LQ L+L+HN I  ++G+S   XXXXXXXXXXXXXXXXXXX                                                   N+  L +        V +N +  V ++ +L   +FL+ L+L G P+   E   YRARV+ RLQ L +LD + +S  EKVKA+ + G   SD+  R++VF KHLP  +F N L
Sbjct:  213 LTRALVEPRLGVLGRNPFTQAHVFTTATLLGLHLADIDALAEFPHLQHVRCSSNEITTLAPLANLPLLLSVDASNNQLTKVLDFDTPACTPSHAWVNGDTWI----------GSLLRRADLSENR------IERIRDLSSAHQFLQELNLAHNEITEIDGVSQLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFNNMTQLHSIGRXXXXXVSYNDIEDVNELNHLMPLRFLNQLMLAGAPIVEREGSFYRARVLRRLQQLAVLDSDAVSAREKVKALVMHG---SDVAARQRVFAKHLPGQQFINYL 540          
BLAST of mRNA_Ecto-sp13_S_contig1869.5875.1 vs. uniprot
Match: UPI001E666DA2 (leucine-rich repeat and guanylate kinase domain-containing protein-like n=1 Tax=Salmo salar TaxID=8030 RepID=UPI001E666DA2)

HSP 1 Score: 77.8 bits (190), Expect = 3.520e-13
Identity = 57/185 (30.81%), Postives = 89/185 (48.11%), Query Frame = 1
Query:  631 SMLHRVNVSYNRQDPWIIIDSLRDLSHHRNLQHLDLSHNAIEVLEGLSXXXXXXXXXXXXXXXXXXXXXXGLPLVELHLDHNYIEKAENVGSDKLASLRILRLGFNDIGNLANLKTCLSLVTLDVRFNKVSAVRQVEYLQECQFLHTLVLEGNPMDRLEAYRARVIFRLQGLMLLDRNKISPEEK 1185
            S L ++N+ YN          +  L H  +L HL L+HN I  + GL                        LP+ +L L  N IEK ENV  + L +L++L L  N I +L+ L+    L ++++  N +S +++  ++ +   L  L L+ NP+     YR  VIF LQ L  LD+ K++ EEK
Sbjct:   11 SSLSKLNLDYN------CFSEIGGLLHCASLTHLSLAHNKISCISGLDK----------------------LPIKDLCLRGNQIEKIENV--ETLRTLQVLDLSLNRITSLSGLQNLHLLGSINLESNLISEIKEATHIHDLCLLRELNLQRNPVQEQLDYRLAVIFLLQHLTGLDQEKVTVEEK 165          
BLAST of mRNA_Ecto-sp13_S_contig1869.5875.1 vs. uniprot
Match: A0A4V1IT65_9FUNG (Outer arm dynein light chain 1 (Fragment) n=1 Tax=Caulochytrium protostelioides TaxID=1555241 RepID=A0A4V1IT65_9FUNG)

HSP 1 Score: 63.5 bits (153), Expect = 1.120e-7
Identity = 42/110 (38.18%), Postives = 64/110 (58.18%), Query Frame = 1
Query:  865 LDHNYIEKAENVGSDKLASLRILRLGFNDIGNLANLKTCLSLVTLDVRFNKVSAVRQVEYLQECQFLHTLVLEGNPMDRLEAYRARVIFRLQGLMLLDRNKISPEEKVKA 1194
            L +N I + ENVG  KL  LR L+L  N+I ++ NL+   +L  LD+  N V     +E L++   L  L L GNP+++L+ YRA  I  L  L +LD  +I+  E+++A
Sbjct:   52 LQNNQIGRIENVG--KLKGLRYLQLALNNIRHIENLQHNEALEKLDLTVNFVENPLDLENLKDNYRLRELYLVGNPVNKLDGYRAFAIHTLPQLRVLDGVEITRTERLEA 159          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1869.5875.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D7FQ63_ECTSI4.990e-23082.61Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5KB11_9PHAE4.090e-8185.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YJY7_9STRA4.490e-4940.96Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A8J2T0T5_9STRA2.010e-2628.24Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A3F2RVW1_9STRA7.900e-2127.62Uncharacterized protein n=1 Tax=Phytophthora kerno... [more]
A0A3R7K2Y1_9STRA3.930e-1927.27Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]
A0A7S2BD69_9STRA4.590e-1638.18Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A5D6YMV9_9STRA5.160e-1631.41Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
UPI001E666DA23.520e-1330.81leucine-rich repeat and guanylate kinase domain-co... [more]
A0A4V1IT65_9FUNG1.120e-738.18Outer arm dynein light chain 1 (Fragment) n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1869contigEcto-sp13_S_contig1869:3844..7982 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score658.3
Seed ortholog evalue2.9e-186
Seed eggNOG ortholog2880.D7FQ63
Model size1521
Hectar predicted targeting categoryother localisation
Exons8
EggNOG free text desc.axoneme assembly
EggNOG OGsCOG4886@1,KOG0531@2759
Cds size1521
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1869.5875.1prot_Ecto-sp13_S_contig1869.5875.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1869 3844..7982 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462958.1283128-CDS-Ecto-sp13_S_contig1869:3843..41221681462958.1283128-CDS-Ecto-sp13_S_contig1869:3843..4122Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1869 3844..4122 -
1681462958.14117-CDS-Ecto-sp13_S_contig1869:4313..43881681462958.14117-CDS-Ecto-sp13_S_contig1869:4313..4388Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1869 4314..4388 -
1681462958.1517804-CDS-Ecto-sp13_S_contig1869:4992..51431681462958.1517804-CDS-Ecto-sp13_S_contig1869:4992..5143Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1869 4993..5143 -
1681462958.1623793-CDS-Ecto-sp13_S_contig1869:5672..58471681462958.1623793-CDS-Ecto-sp13_S_contig1869:5672..5847Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1869 5673..5847 -
1681462958.1771536-CDS-Ecto-sp13_S_contig1869:6130..62881681462958.1771536-CDS-Ecto-sp13_S_contig1869:6130..6288Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1869 6131..6288 -
1681462958.1882102-CDS-Ecto-sp13_S_contig1869:6811..69611681462958.1882102-CDS-Ecto-sp13_S_contig1869:6811..6961Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1869 6812..6961 -
1681462958.2004826-CDS-Ecto-sp13_S_contig1869:7227..76071681462958.2004826-CDS-Ecto-sp13_S_contig1869:7227..7607Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1869 7228..7607 -
1681462958.2132416-CDS-Ecto-sp13_S_contig1869:7829..79821681462958.2132416-CDS-Ecto-sp13_S_contig1869:7829..7982Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1869 7830..7982 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1869.5875.1

>prot_Ecto-sp13_S_contig1869.5875.1 ID=prot_Ecto-sp13_S_contig1869.5875.1|Name=mRNA_Ecto-sp13_S_contig1869.5875.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=507bp
MDEVERQAAARIQAVQRGRLARFSADRRRRSLVRREATARWEREQAVIKI
QAACRGTRGREETALYREQQAAASKIQARIRGDKARKDFNRKSPGGLPLD
RADIKKGLHTLGRNPHDLRLCYIGLMAANAGVSNINSIVEFPLLQTVDLS
GNCISSTKPLSRLPFLHDLDISHNCLTSLLDYELFEGEDFSWQASQDWLH
DWRAEVVRSSSMLHRVNVSYNRQDPWIIIDSLRDLSHHRNLQHLDLSHNA
IEVLEGLSALKCLRTLRMNNNKIRRIEGLEGLPLVELHLDHNYIEKAENV
GSDKLASLRILRLGFNDIGNLANLKTCLSLVTLDVRFNKVSAVRQVEYLQ
ECQFLHTLVLEGNPMDRLEAYRARVIFRLQGLMLLDRNKISPEEKVKAVN
LMGDDESDLPHRKQVFHKHLPEAEFTNTLPPFREPEGPPAPQHDPAEKPE
IVSGSDSPEEGKFVFEDSTVFIVDPPAPTAVSREAISCVKHVMTASSYGF
SRGALQ*
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mRNA from alignment at Ecto-sp13_S_contig1869:3844..7982-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1869.5875.1 ID=mRNA_Ecto-sp13_S_contig1869.5875.1|Name=mRNA_Ecto-sp13_S_contig1869.5875.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4139bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1869:3844..7982- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACGAAGTGGAACGGCAAGCGGCAGCACGGATACAGGCAGTGCAGCG AGGGCGACTTGCTCGATTTTCTGCGGATCGACGAAGACGGAGCCTCGTCC GCAGAGAAGCCACGGCACGATGGGAAAGGGAGCAAGCCGTCATAAAGATA CAGGTACATTTTGGGAGAATAGTGGTTTCTTCTGCTAAGATATATCCACA ATGCCGGTTGCCGACTTCGGGCGTGTGCGCGCCATTTCGTATTTGAATGG CGTACGAGCTAATACTCGCCAAGACCAATCAACAATTACAATTTTACCGG CAGCTTGCTGTCTTCGCGCCGACTCGATAATTTGCAGTATGTTTTACTCC TGCATACATATGTGTCTCATTCCAGGCTGCATGCCGAGGTACAAGAGGCC GCGAGGAAACAGCACTTTACCGAGAGCAGCAGGCAGCGGCATCTAAGATT CAGGCGAGGATACGTGGGGATAAAGCAAGGAAGGACTTCAACCGAAAGTC ACCAGGAGGGCTACCACTTGATCGAGCAGACATAAAAAAAGGTCTCCACA CCCTCGGACGCAACCCACATGATTTGCGTCTGTGTTACATCGGATTGATG GCAGCGAACGCAGGGGTTTCCAACATCAACTCTATCGTCGAATTTCCTTT GCTCCAAACGGTGGATCTGAGTGGAAACTGTATATCCAGCACGAAGCCCC TGTCGAGGCTGCCCTTCTTACACGACCTCGACATATCTCACAACTGCCTG ACCAGGTAAACGAGCGTGCGTAGACTAGACTAAATGAGGGAGGGTAGACT TATAGGCTGCCCTATACCAAAGGGAGCGATATGCAAACATCTTTTTCACA GCCTCGGAAAGAAGTAATGCCAAACGGAAGTGTTTGTGTCCAACTAGTTT ACATCATTTGTCGACTAGTGAATCCGTCTTCGATTGCGCGCGTCGTCACT TTCACAGACGACCCGTCGTTGTGTTGTTTACGCTGACGTTTCGCATGTCG TGCCACGTCAAATATGGACAGCTTACTGGACTATGAGCTCTTCGAAGGGG AGGACTTCTCGTGGCAGGCTAGCCAGGATTGGCTACATGACTGGAGAGCT GAAGTCGTGCGTTCGTCGTCCATGCTTCACCGGGTGAACGTGTCGTACAA CAGGCAAGACCCCTGGATCATGTGCATATCACTGCAGTGTTTTCCAATGC AACAGGTGACACCAATCACGCCCCAGGAGTATGCTACGGTGGCGTGAGCG CCTCCCACAAGTAGCAGCAGTAGGTGTAGAATAAAAACATTTGTCGGGAA GCCTGTCTAGGAATTGATTTTGCTACTTAAGAATCAACTTCTACCAGACA ACACACAAGAAGCAGCTAAGGCGAAACGACTTGTTTCCTTCAACCGTGAA TCAACCCCTTCACAACGATCGCTGCGTCAAAGTTGCTGTTGGTCATGGAA TCTCCGTGCCTTGCAACGTTCGCCGCCCCGAGATCAAACTTTGCAGGAAA CTTGTTTGTGAGCACAGGACGCACCCGAGTACTCACGCCGCTAAACATGT CGTTCTACCAAAGGTGCTCGGTCAGAACAGCAGTGCATCTCTGACATTGC CGAGTCTAGGTGATGACGGGATGTCGAACTACAGCGCTTACTCTTCACAA GAGTATCTCCTTGCTTGTTTGGTCGTACTTCGTTTTCTGGGCAGCATCGA CAGCCTGAGAGATCTGTCGCACCATCGAAACCTCCAACACCTCGACCTAA GCCACAACGCTATCGAAGTGCTGGAGGGACTATCAGCTCTCAAGTGTCTT CGAACTTTGAGAATGAACAACAACAAGATACGCCGGATCGAGGGACTCGA AGGTGAGGGCGGAAGAAGTAAACCAATGCTTTAATAGTGCATGTGCAGGA TTAGAGAGGCCCACTCTTGTTACATTTGCCGGTGGAGATACCACCTGAAA AGCGGTCGATAAACTATCTGCTCTAGCAACTTCCCGTCGTTCCATCAGCT TAGTTTGACGACAAACGTTCTCCTCCCCCGAGGCCCAAGAAAAAAAAACC GTCCCAGTCGCTCTATACCACCCACCGCTAGTCCCCCCTCTCCTGCTCCA ACGTGTGCGCACACAAACCAACGACGCCAACAAAGGTTTACCGTTGGTGG AGCTGCACCTCGATCACAACTACATAGAGAAGGCGGAGAACGTCGGTTCC GACAAGCTAGCTAGCCTCCGCATCCTCCGACTCGGCTTCAACGACATTGG AAACCTCGCCAACCTTAAGACCTGCCTCTCGCTAGTCACCTTGGATGTTC GGTTCAACAAGTGAGTAAGCAGCAACAAGCACACAGAGATGCTCATGAGG TCAACGCTTGTCGCTGCAATTTGGTTGATTCGCCGAGGTGCACTGCATCC AGTGTCAGCCAATAGCAAATACCGCAAGTATGCGAAAACGCGACAAAACG TCTTGGAAGACATCGACTAAATAGAAATAGTTGTGCAATTTTCTTCTCCG AAAGCGATTCAATTCTGAAACACCGGACACCACATCAACCACGTACAGAG CGGAGAAGTACCCAAACCGCAACCCGTAAACAACGACACGGTATTGCCGA GTGGTATCGAAAAGAAACTAACGTGTTTGACCCGGCTCCTTTCCTTCGAT ATTCCACGAGGAAGGCAAACCGTTTTCTTCGTAGTTCCACACCAACCCTT AATAACACACACGCGCTCATAAGACCAACTACGGGTCGTTTTTCACTCGC TAGAAAGTAGCGTATGCTCAGGCCAAAACCAAAACCTCCTCGGGCCCCTT GTTTTCGTTGGATTAATCCCTGGCTCGGTGAACCGAAAGAGTTTCGGCAG TGCGCCAGGTCGAGTACTTGCAGGAGTGCCAATTTCTGCATACCCTGGTT CTAGAGGGGAACCCCATGGATCGTCTAGAAGCTTACCGCGCCCGGGTGAT TTTCCGGCTGCAAGGGCTGATGCTACTCGACAGGAACAAGGTAAAAGAGT GTGGGTCTTGATTGCTCGGTCATAACGGCAGGAATGATTTGCTTGAAACT CTCATTTGGAAAGATAGCCTGAAGAAGACAGAGAAGGGGAGCTAGTGGAG GGTGGAGGTAAAAAGACGGTTTGTCCAGCAGGACTGAGACATAACCGCGC AACACCGATGTGTCACAGGAACGGGTGAAATTCCCGAACTCTGACAAACT GCAAAGAGTTTGTACTGGGATTTATAAGTTCTATGCGGCGAACCTCGATC AATCGAATTCCCGTATGGCTGGGTGCAAGGAAAGGTTGGGGATGTGCTGC GATCGGAAAATCAAAGCAAACGAGAAAACTGAAGAGCCTTTTTGGTTTGC ACGAGGTTTTATTGTTACGCGCCATGATCTCACAACATCGACTAAGTAGG TTTTCAGCATTGCTTTTTTATTGAGCGTACGTCCAAACGGTCAAGGCCTT TAATTCTTTGTTCGGGCCTGACTTTCTCAACACCCGGGCATCAAGCGGTG GCGTGTAATGTGTATCCCGGCAACAACGATGACCCCAAAACACCACTGAC AGTTGTCAAACCCACGCAACTGCTTTCCGGTTCGCCACAACAAGATATCT CCCGAAGAAAAGGTGAAGGCGGTGAATCTTATGGGCGACGACGAAAGCGA TCTCCCGCACCGGAAGCAGGTGCGTTAGCAGACACGTCTACATACTAGCG CATGTAGCAGCAGCCTACGAAGTAATTGCGGCGTAGACCAGCCGCAACAA CAACGGCTCAGAGCCCTTTGCTAGCGCTCGAAACGCTCTACCACAAACAT CGAACCATGCATAAATCCCCACCTACATCTCTGAAAGCGCAACTCACACC ACCCCGATAGGTCTTCCACAAGCACCTGCCCGAAGCAGAGTTCACCAACA CCCTGCCCCCTTTCCGCGAGCCTGAGGGGCCTCCGGCACCGCAACACGAC CCGGCCGAGAAACCGGAAATAGTCAGTGGCAGCGACAGCCCAGAGGAGGG GAAATTCGTGTTTGAAGACTCTACAGTTTTCATCGTCGACCCTCCAGCTC CTACTGCGGTCTCTCGTGAGGCAATAAGCTGCGTGAAGCACGTCATGACG GCGTCCTCCTATGGTTTCTCGAGAGGAGCGCTGCAGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1869:3844..7982-

>mRNA_Ecto-sp13_S_contig1869.5875.1 ID=mRNA_Ecto-sp13_S_contig1869.5875.1|Name=mRNA_Ecto-sp13_S_contig1869.5875.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1521bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1869:3844..7982- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACGAAGTGGAACGGCAAGCGGCAGCACGGATACAGGCAGTGCAGCG
AGGGCGACTTGCTCGATTTTCTGCGGATCGACGAAGACGGAGCCTCGTCC
GCAGAGAAGCCACGGCACGATGGGAAAGGGAGCAAGCCGTCATAAAGATA
CAGGCTGCATGCCGAGGTACAAGAGGCCGCGAGGAAACAGCACTTTACCG
AGAGCAGCAGGCAGCGGCATCTAAGATTCAGGCGAGGATACGTGGGGATA
AAGCAAGGAAGGACTTCAACCGAAAGTCACCAGGAGGGCTACCACTTGAT
CGAGCAGACATAAAAAAAGGTCTCCACACCCTCGGACGCAACCCACATGA
TTTGCGTCTGTGTTACATCGGATTGATGGCAGCGAACGCAGGGGTTTCCA
ACATCAACTCTATCGTCGAATTTCCTTTGCTCCAAACGGTGGATCTGAGT
GGAAACTGTATATCCAGCACGAAGCCCCTGTCGAGGCTGCCCTTCTTACA
CGACCTCGACATATCTCACAACTGCCTGACCAGCTTACTGGACTATGAGC
TCTTCGAAGGGGAGGACTTCTCGTGGCAGGCTAGCCAGGATTGGCTACAT
GACTGGAGAGCTGAAGTCGTGCGTTCGTCGTCCATGCTTCACCGGGTGAA
CGTGTCGTACAACAGGCAAGACCCCTGGATCATCATCGACAGCCTGAGAG
ATCTGTCGCACCATCGAAACCTCCAACACCTCGACCTAAGCCACAACGCT
ATCGAAGTGCTGGAGGGACTATCAGCTCTCAAGTGTCTTCGAACTTTGAG
AATGAACAACAACAAGATACGCCGGATCGAGGGACTCGAAGGTTTACCGT
TGGTGGAGCTGCACCTCGATCACAACTACATAGAGAAGGCGGAGAACGTC
GGTTCCGACAAGCTAGCTAGCCTCCGCATCCTCCGACTCGGCTTCAACGA
CATTGGAAACCTCGCCAACCTTAAGACCTGCCTCTCGCTAGTCACCTTGG
ATGTTCGGTTCAACAAAGTTTCGGCAGTGCGCCAGGTCGAGTACTTGCAG
GAGTGCCAATTTCTGCATACCCTGGTTCTAGAGGGGAACCCCATGGATCG
TCTAGAAGCTTACCGCGCCCGGGTGATTTTCCGGCTGCAAGGGCTGATGC
TACTCGACAGGAACAAGATATCTCCCGAAGAAAAGGTGAAGGCGGTGAAT
CTTATGGGCGACGACGAAAGCGATCTCCCGCACCGGAAGCAGGTCTTCCA
CAAGCACCTGCCCGAAGCAGAGTTCACCAACACCCTGCCCCCTTTCCGCG
AGCCTGAGGGGCCTCCGGCACCGCAACACGACCCGGCCGAGAAACCGGAA
ATAGTCAGTGGCAGCGACAGCCCAGAGGAGGGGAAATTCGTGTTTGAAGA
CTCTACAGTTTTCATCGTCGACCCTCCAGCTCCTACTGCGGTCTCTCGTG
AGGCAATAAGCTGCGTGAAGCACGTCATGACGGCGTCCTCCTATGGTTTC
TCGAGAGGAGCGCTGCAGTAG
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