mRNA_Ecto-sp13_S_contig1869.5874.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1869.5874.1
Unique NamemRNA_Ecto-sp13_S_contig1869.5874.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1869.5874.1 vs. uniprot
Match: A0A6H5K5U4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5U4_9PHAE)

HSP 1 Score: 475 bits (1223), Expect = 2.550e-165
Identity = 262/272 (96.32%), Postives = 266/272 (97.79%), Query Frame = 1 
Query:    1 QAVLLRRLINGALLLNTLPLTFIGVVLSLNVFSVSVLAALVPALGACLFGLSLAKLWMELADCRHETSVREPDDDRESSRSWKWTG---VLSVASLTGGLLSGSCPPPGPAFMLVLLAAGVGGSGDALAVGGGEWRATAALVTCSASLLRVGLLLLENGAAVGPLPEVSGLVLGGLAGLGIGNLSLRLLSRPRWGINESNNGSANSAADAYRWHNTPPAAALRRAVLAVALVSSVAMAAGGPPAALAAVSRPVVAGALAATLLVASFGALWG 807
            QAVLLRRLINGALLLNTLPLTFIGVVLSLNVFSVSVLAALVPALGACLFGLSLAKLWMELADCRHETSVREPDD RESSRSWKWTG   VLSVASLTGGLLSGSCPPPGPAFM+VLLAAGVGGSGDALAVGGGEWRATAALVTCSASLLRVGLLLLENGAAVGPLPEVSGLVLGGLAGLGIGNLSLRLLSRPRWGIN+S NGSANSAADAYRWH+TP AAALRRAVLAVALVSS+AMAAGGPPAALAAVSRPVVAGALAATLLVASFGALWG
Sbjct:   61 QAVLLRRLINGALLLNTLPLTFIGVVLSLNVFSVSVLAALVPALGACLFGLSLAKLWMELADCRHETSVREPDDGRESSRSWKWTGDLCVLSVASLTGGLLSGSCPPPGPAFMVVLLAAGVGGSGDALAVGGGEWRATAALVTCSASLLRVGLLLLENGAAVGPLPEVSGLVLGGLAGLGIGNLSLRLLSRPRWGINDSKNGSANSAADAYRWHDTPTAAALRRAVLAVALVSSIAMAAGGPPAALAAVSRPVVAGALAATLLVASFGALWG 332
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BLAST of mRNA_Ecto-sp13_S_contig1869.5874.1 vs. uniprot
Match: D7FQ64_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ64_ECTSI)

HSP 1 Score: 309 bits (792), Expect = 1.260e-100
Identity = 163/164 (99.39%), Postives = 164/164 (100.00%), Query Frame = 1 
Query:    1 QAVLLRRLINGALLLNTLPLTFIGVVLSLNVFSVSVLAALVPALGACLFGLSLAKLWMELADCRHETSVREPDDDRESSRSWKWTGVLSVASLTGGLLSGSCPPPGPAFMLVLLAAGVGGSGDALAVGGGEWRATAALVTCSASLLRVGLLLLENGAAVGPLPE 492
            QAVLLRRLINGALLLNTLPLTFIGVVLSLNVFSVSVLAALVPALGACLFGLSLAKLWMELADCRHETSVREPDDDRESSRSWKWTGVLSVASLTGGLLSGSCPPPGPAFM+VLLAAGVGGSGDALAVGGGEWRATAALVTCSASLLRVGLLLLENGAAVGPLPE
Sbjct:  131 QAVLLRRLINGALLLNTLPLTFIGVVLSLNVFSVSVLAALVPALGACLFGLSLAKLWMELADCRHETSVREPDDDRESSRSWKWTGVLSVASLTGGLLSGSCPPPGPAFMVVLLAAGVGGSGDALAVGGGEWRATAALVTCSASLLRVGLLLLENGAAVGPLPE 294
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1869.5874.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K5U4_9PHAE2.550e-16596.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQ64_ECTSI1.260e-10099.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1869contigEcto-sp13_S_contig1869:419..2238 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size807
Hectar predicted targeting categorysignal anchor
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_007280.1
Cds size807
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462958.0348616-CDS-Ecto-sp13_S_contig1869:418..6011681462958.0348616-CDS-Ecto-sp13_S_contig1869:418..601Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1869 419..601 +
1681462958.0492-CDS-Ecto-sp13_S_contig1869:788..8611681462958.0492-CDS-Ecto-sp13_S_contig1869:788..861Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1869 789..861 +
1681462958.0596406-CDS-Ecto-sp13_S_contig1869:1103..13391681462958.0596406-CDS-Ecto-sp13_S_contig1869:1103..1339Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1869 1104..1339 +
1681462958.084234-CDS-Ecto-sp13_S_contig1869:1923..22381681462958.084234-CDS-Ecto-sp13_S_contig1869:1923..2238Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1869 1924..2238 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1869.5874.1prot_Ecto-sp13_S_contig1869.5874.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1869 419..2238 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1869.5874.1

>prot_Ecto-sp13_S_contig1869.5874.1 ID=prot_Ecto-sp13_S_contig1869.5874.1|Name=mRNA_Ecto-sp13_S_contig1869.5874.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=269bp
QAVLLRRLINGALLLNTLPLTFIGVVLSLNVFSVSVLAALVPALGACLFG
LSLAKLWMELADCRHETSVREPDDDRESSRSWKWTGVLSVASLTGGLLSG
SCPPPGPAFMLVLLAAGVGGSGDALAVGGGEWRATAALVTCSASLLRVGL
LLLENGAAVGPLPEVSGLVLGGLAGLGIGNLSLRLLSRPRWGINESNNGS
ANSAADAYRWHNTPPAAALRRAVLAVALVSSVAMAAGGPPAALAAVSRPV
VAGALAATLLVASFGALWG
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mRNA from alignment at Ecto-sp13_S_contig1869:419..2238+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1869.5874.1 ID=mRNA_Ecto-sp13_S_contig1869.5874.1|Name=mRNA_Ecto-sp13_S_contig1869.5874.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1820bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1869:419..2238+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGCGGTGCTCCTACGGCGGTTGATTAACGGGGCGCTCCTCCTCAACAC
GCTGCCCCTGACGTTTATCGGCGTGGTGCTGTCCCTGAACGTCTTCTCCG
TCTCCGTGCTGGCGGCCCTGGTGCCCGCCCTCGGTGCCTGCCTTTTCGGG
CTCTCCCTGGCAAAACTCTGGATGGAGCTGGCGGTGAGCAAGACACAGAG
AGATCACCTCTCTCTCTCTTTTTATGCTATGTGTGTGCTCGATCCCGCGG
CTGCTGTTCGGTACAACAACCACCGTGTTTCTTAGAGTTGTTCGTTCTCC
AGACAAGTGTATGCCGTTCGACAGCGTACTCTCCTTGTGGTCTTTGGTGT
GCGCGTGCCTCGAACAACAGGACTGTCGGCACGAAACGTCGGTGCGAGAG
CCTGACGACGACCGCGAATCCTCACGCTCGTGGAAATGGACAGGCGAGTG
ATAGCTCGATACCCTTGAACCCCAGCGGCAGGTGCAGTTCGCAGCCCCAC
ACACAACCTTTGAATATTTTGCTGTCGCGATTGTTTTTGTTTTTCCTCTT
TCCGCCCCTCGATCGAGTGGACTCGGTTCCTCTCGAAACTCCGCCAACCT
TCCACTACTCCCCATTTTAAGGTTAGACCGAAACATACGCATTTTGATCG
GTGGGTGTGTTCTGTCATGGTTCTCCACTCTCTAGGCGTTCTGTCGGTGG
CGAGCCTTACGGGCGGGCTGCTCTCCGGGAGCTGCCCCCCTCCCGGCCCG
GCTTTTATGCTAGTTCTCTTGGCCGCGGGAGTCGGAGGCAGTGGCGATGC
GCTGGCCGTTGGGGGCGGGGAGTGGAGGGCCACGGCAGCGCTAGTAACTT
GCAGCGCGTCGTTGCTGCGAGTCGGCCTCCTTCTGTTGGAGAACGGAGCC
GCCGTGGGGCCGCTGCCAGAGGTGAGGGTGTGACCGCGCGTGGGTGCGTG
CGTGCGTGCGTGTGTGCGACTAGCTGTTACTGTTCCCCCTTGGGTACATG
CGTACGTGCGTGCAACTACAGATGCTATGTTACATTTTCCCGTTTGTCTT
CCTCCTTGACGTCGACGGCGTTTCGGTTTCTCACCAATGAAAATGAGTCG
AACCGCCTTCGCGAGGTTGTTACGTTCATGAGGAAATAACACAGGAAGGG
GAGACGCAGAGCCTACCTAACCCTAACCCAGCTTCCCCGATTGCATCCTT
TATCCCAACATGTTTATCTAATAGAAAAACCCGACAAAGGAAACTGAATG
AGTCGAGACACAGCGGGATGCAATGTTAGAGCGTGCCACACGCGAGAAGA
GGTGGATTACATCATGCACTGGATGAATAATGAATGGTAAAGCTCCCTGT
TCCTTCTCAACGGTGTTGGAAAGTTGGACGGATCGGGTGCGAGTATACTC
GACGCGATGCGATAAAAGTTGCACCGCATCCTGTGGTCTTGTTTTGATAG
CCAGAGCAAGTAGAAGACACAAGCAATTTCATGTACACGCGCACGCAATA
CGCAGGTGTCGGGTCTGGTCTTGGGAGGTCTCGCCGGCCTCGGGATCGGC
AACCTCTCCCTGCGCCTGCTGTCCCGCCCCCGCTGGGGAATCAACGAGAG
CAACAACGGCTCCGCCAACTCCGCCGCGGACGCATACCGGTGGCACAACA
CGCCCCCCGCGGCGGCCCTCCGGCGCGCCGTCCTCGCCGTCGCGCTCGTC
TCCTCCGTCGCCATGGCCGCGGGCGGGCCCCCGGCGGCCCTGGCGGCGGT
GTCCCGGCCGGTGGTCGCGGGGGCGCTCGCCGCGACGCTGCTCGTCGCCT
CGTTCGGCGCGCTGTGGGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1869:419..2238+

>mRNA_Ecto-sp13_S_contig1869.5874.1 ID=mRNA_Ecto-sp13_S_contig1869.5874.1|Name=mRNA_Ecto-sp13_S_contig1869.5874.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=807bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1869:419..2238+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGCGGTGCTCCTACGGCGGTTGATTAACGGGGCGCTCCTCCTCAACAC
GCTGCCCCTGACGTTTATCGGCGTGGTGCTGTCCCTGAACGTCTTCTCCG
TCTCCGTGCTGGCGGCCCTGGTGCCCGCCCTCGGTGCCTGCCTTTTCGGG
CTCTCCCTGGCAAAACTCTGGATGGAGCTGGCGGACTGTCGGCACGAAAC
GTCGGTGCGAGAGCCTGACGACGACCGCGAATCCTCACGCTCGTGGAAAT
GGACAGGCGTTCTGTCGGTGGCGAGCCTTACGGGCGGGCTGCTCTCCGGG
AGCTGCCCCCCTCCCGGCCCGGCTTTTATGCTAGTTCTCTTGGCCGCGGG
AGTCGGAGGCAGTGGCGATGCGCTGGCCGTTGGGGGCGGGGAGTGGAGGG
CCACGGCAGCGCTAGTAACTTGCAGCGCGTCGTTGCTGCGAGTCGGCCTC
CTTCTGTTGGAGAACGGAGCCGCCGTGGGGCCGCTGCCAGAGGTGTCGGG
TCTGGTCTTGGGAGGTCTCGCCGGCCTCGGGATCGGCAACCTCTCCCTGC
GCCTGCTGTCCCGCCCCCGCTGGGGAATCAACGAGAGCAACAACGGCTCC
GCCAACTCCGCCGCGGACGCATACCGGTGGCACAACACGCCCCCCGCGGC
GGCCCTCCGGCGCGCCGTCCTCGCCGTCGCGCTCGTCTCCTCCGTCGCCA
TGGCCGCGGGCGGGCCCCCGGCGGCCCTGGCGGCGGTGTCCCGGCCGGTG
GTCGCGGGGGCGCTCGCCGCGACGCTGCTCGTCGCCTCGTTCGGCGCGCT
GTGGGGC
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