prot_Ecto-sp13_S_contig1869.5874.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig1869.5874.1
Unique Name	prot_Ecto-sp13_S_contig1869.5874.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	269

Homology

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BLAST of mRNA_Ecto-sp13_S_contig1869.5874.1 vs. uniprot
Match: A0A6H5K5U4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5U4_9PHAE)

HSP 1 Score: 475 bits (1223), Expect = 2.550e-165
Identity = 262/272 (96.32%), Postives = 266/272 (97.79%), Query Frame = 0

Query:    1 QAVLLRRLINGALLLNTLPLTFIGVVLSLNVFSVSVLAALVPALGACLFGLSLAKLWMELADCRHETSVREPDDDRESSRSWKWTG---VLSVASLTGGLLSGSCPPPGPAFMLVLLAAGVGGSGDALAVGGGEWRATAALVTCSASLLRVGLLLLENGAAVGPLPEVSGLVLGGLAGLGIGNLSLRLLSRPRWGINESNNGSANSAADAYRWHNTPPAAALRRAVLAVALVSSVAMAAGGPPAALAAVSRPVVAGALAATLLVASFGALWG 269
            QAVLLRRLINGALLLNTLPLTFIGVVLSLNVFSVSVLAALVPALGACLFGLSLAKLWMELADCRHETSVREPDD RESSRSWKWTG   VLSVASLTGGLLSGSCPPPGPAFM+VLLAAGVGGSGDALAVGGGEWRATAALVTCSASLLRVGLLLLENGAAVGPLPEVSGLVLGGLAGLGIGNLSLRLLSRPRWGIN+S NGSANSAADAYRWH+TP AAALRRAVLAVALVSS+AMAAGGPPAALAAVSRPVVAGALAATLLVASFGALWG
Sbjct:   61 QAVLLRRLINGALLLNTLPLTFIGVVLSLNVFSVSVLAALVPALGACLFGLSLAKLWMELADCRHETSVREPDDGRESSRSWKWTGDLCVLSVASLTGGLLSGSCPPPGPAFMVVLLAAGVGGSGDALAVGGGEWRATAALVTCSASLLRVGLLLLENGAAVGPLPEVSGLVLGGLAGLGIGNLSLRLLSRPRWGINDSKNGSANSAADAYRWHDTPTAAALRRAVLAVALVSSIAMAAGGPPAALAAVSRPVVAGALAATLLVASFGALWG 332

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BLAST of mRNA_Ecto-sp13_S_contig1869.5874.1 vs. uniprot
Match: D7FQ64_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ64_ECTSI)

HSP 1 Score: 309 bits (792), Expect = 1.260e-100
Identity = 163/164 (99.39%), Postives = 164/164 (100.00%), Query Frame = 0

Query:    1 QAVLLRRLINGALLLNTLPLTFIGVVLSLNVFSVSVLAALVPALGACLFGLSLAKLWMELADCRHETSVREPDDDRESSRSWKWTGVLSVASLTGGLLSGSCPPPGPAFMLVLLAAGVGGSGDALAVGGGEWRATAALVTCSASLLRVGLLLLENGAAVGPLPE 164
            QAVLLRRLINGALLLNTLPLTFIGVVLSLNVFSVSVLAALVPALGACLFGLSLAKLWMELADCRHETSVREPDDDRESSRSWKWTGVLSVASLTGGLLSGSCPPPGPAFM+VLLAAGVGGSGDALAVGGGEWRATAALVTCSASLLRVGLLLLENGAAVGPLPE
Sbjct:  131 QAVLLRRLINGALLLNTLPLTFIGVVLSLNVFSVSVLAALVPALGACLFGLSLAKLWMELADCRHETSVREPDDDRESSRSWKWTGVLSVASLTGGLLSGSCPPPGPAFMVVLLAAGVGGSGDALAVGGGEWRATAALVTCSASLLRVGLLLLENGAAVGPLPE 294

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig1869.5874.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig1869.5874.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5K5U4_9PHAE	2.550e-165	96.32	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FQ64_ECTSI	1.260e-100	99.39	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 134..153
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 38..60
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 106..127
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 81..100
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 61..80
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 250..268
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 269..269
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..11
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 239..249
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 187..217
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 218..238
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 101..105
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 154..164
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 165..186
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 12..32
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 128..133
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 33..37
None	No IPR available	TMHMM	TMhelix		coord: 249..268
None	No IPR available	TMHMM	TMhelix		coord: 222..244
None	No IPR available	TMHMM	TMhelix		coord: 34..56
None	No IPR available	TMHMM	TMhelix		coord: 7..29

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig1869	contig	Ecto-sp13_S_contig1869:419..2238 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig1869.5874.1	mRNA_Ecto-sp13_S_contig1869.5874.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig1869 419..2238 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig1869.5874.1 ID=prot_Ecto-sp13_S_contig1869.5874.1|Name=mRNA_Ecto-sp13_S_contig1869.5874.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=269bp
QAVLLRRLINGALLLNTLPLTFIGVVLSLNVFSVSVLAALVPALGACLFG
LSLAKLWMELADCRHETSVREPDDDRESSRSWKWTGVLSVASLTGGLLSG
SCPPPGPAFMLVLLAAGVGGSGDALAVGGGEWRATAALVTCSASLLRVGL
LLLENGAAVGPLPEVSGLVLGGLAGLGIGNLSLRLLSRPRWGINESNNGS
ANSAADAYRWHNTPPAAALRRAVLAVALVSSVAMAAGGPPAALAAVSRPV
VAGALAATLLVASFGALWG