mRNA_Ecto-sp13_S_contig18682.5871.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18682.5871.1
Unique NamemRNA_Ecto-sp13_S_contig18682.5871.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18682.5871.1 vs. uniprot
Match: D8LSK3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSK3_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 4.490e-23
Identity = 46/48 (95.83%), Postives = 46/48 (95.83%), Query Frame = 1 
Query:    1 ESMLFEAAAGTKSNYFGGYIETIETPDYVDPEADIMFKINKFFGRGKK 144
            ESMLFEAA GTKSNYFGGYIETIETPDYVDPEADIMFKINK FGRGKK
Sbjct:  162 ESMLFEAAVGTKSNYFGGYIETIETPDYVDPEADIMFKINKLFGRGKK 209
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BLAST of mRNA_Ecto-sp13_S_contig18682.5871.1 vs. uniprot
Match: A0A835YZY5_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZY5_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.210e-10
Identity = 29/46 (63.04%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    7 MLFEAAAGTKSNYFGGYIETIETPDYVDPEADIMFKINKFFGRGKK 144
            +LFE AAGTK N+FGGY+ETIE  DYVD +AD+M K+   F  GKK
Sbjct:  157 LLFEKAAGTKKNFFGGYVETIEVKDYVDEDADVMGKLANMFSFGKK 202
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BLAST of mRNA_Ecto-sp13_S_contig18682.5871.1 vs. uniprot
Match: A0A835YSA5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSA5_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 2.490e-8
Identity = 25/37 (67.57%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:    7 MLFEAAAGTKSNYFGGYIETIETPDYVDPEADIMFKI 117
            +LFE AAGTK N+FGGY+ETIE  DYVD +AD+M K+
Sbjct:  112 LLFEKAAGTKKNFFGGYVETIEVKDYVDEDADVMGKL 148
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18682.5871.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LSK3_ECTSI4.490e-2395.83Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YZY5_9STRA1.210e-1063.04Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A835YSA5_9STRA2.490e-867.57Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18682contigEcto-sp13_S_contig18682:550..1036 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score95.9
Seed ortholog evalue5.3e-18
Seed eggNOG ortholog2880.D8LSK3
Model size487
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG OGs2D5NM@1,2SZ3Q@2759
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-09_001950.1
Cds size141
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462957.797065-UTR-Ecto-sp13_S_contig18682:549..5551681462957.797065-UTR-Ecto-sp13_S_contig18682:549..555Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18682 550..555 +
1681462957.8256538-UTR-Ecto-sp13_S_contig18682:696..10361681462957.8256538-UTR-Ecto-sp13_S_contig18682:696..1036Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18682 697..1036 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462957.810239-CDS-Ecto-sp13_S_contig18682:555..6961681462957.810239-CDS-Ecto-sp13_S_contig18682:555..696Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18682 556..696 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18682.5871.1prot_Ecto-sp13_S_contig18682.5871.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18682 556..696 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18682.5871.1

>prot_Ecto-sp13_S_contig18682.5871.1 ID=prot_Ecto-sp13_S_contig18682.5871.1|Name=mRNA_Ecto-sp13_S_contig18682.5871.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=47bp
MLFEAAAGTKSNYFGGYIETIETPDYVDPEADIMFKINKFFGRGKK*
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mRNA from alignment at Ecto-sp13_S_contig18682:550..1036+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18682.5871.1 ID=mRNA_Ecto-sp13_S_contig18682.5871.1|Name=mRNA_Ecto-sp13_S_contig18682.5871.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=487bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18682:550..1036+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGTCGATGCTGTTCGAGGCCGCGGCGGGCACCAAGAGCAACTATTTCGG
CGGCTACATCGAGACAATAGAGACGCCGGACTACGTTGACCCCGAGGCGG
ACATCATGTTCAAGATCAACAAGTTTTTCGGCCGCGGGAAGAAATAGGAA
CCCGCATTTTTGAAGAAAAAGGAAATTTGAACCCGCCCAAATAGACACTT
CGATTCGGCAGCGCCAGGAGGCAGCAAGGCGCCATCTAGGAGCTACTTCG
CTCAGAGCCCTATCTGGGCCAGCAGCATTGTTTTGTTTCTGCGTGTTTGG
GGATTTACCATCGCTCCGAACCGCGGAAGACACGGATACAGTTTAGTTCT
CTTGAGAGAAGGATGATCCGCTATTTTGGTACACGTATTTATTATCCAGG
GACGCTCACGGCCTGTTGGTTTGTTACACGAGAGTAAGGTGTAGTGGTCG
ATGTATATTTGTGTACGTGTGAAAATAGCGCCTGAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18682:550..1036+

>mRNA_Ecto-sp13_S_contig18682.5871.1 ID=mRNA_Ecto-sp13_S_contig18682.5871.1|Name=mRNA_Ecto-sp13_S_contig18682.5871.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=141bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18682:550..1036+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGTTCGAGGCCGCGGCGGGCACCAAGAGCAACTATTTCGGCGGCTA
CATCGAGACAATAGAGACGCCGGACTACGTTGACCCCGAGGCGGACATCA
TGTTCAAGATCAACAAGTTTTTCGGCCGCGGGAAGAAATAG
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