mRNA_Ecto-sp13_S_contig18680.5869.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18680.5869.1
Unique NamemRNA_Ecto-sp13_S_contig18680.5869.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig18680.5869.1 vs. uniprot
Match: A0A6H5JCP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCP2_9PHAE)

HSP 1 Score: 293 bits (751), Expect = 1.850e-96
Identity = 148/152 (97.37%), Postives = 150/152 (98.68%), Query Frame = 1
Query:    1 QVEYVTICVVTAVVTFVLWPVLSRVSVLSHMGTGLDGWLSQAIDTVGLASFAVAATQNGIRRKCHPGTTIVICCITCSGGGILRDVLTSSPVMALSSHAQMYVSTAAFGSGAYLLARKYSKDPLFRICAGFFTVVILRLLACLYDLRLPRMV 456
            QVEYVTICVVTAVVTFVLWPVLSRVSVLSHMGTGLDGWLSQAIDTVGLASFAVAATQNGIRRKCHPGTTIVICCITCSGGGILRDVLTSSPVMALSSHAQMYVSTAA GSGAYLLAR+YSKDPLFRIC GFFTV+ILRLLACLYDLRLPRMV
Sbjct:  279 QVEYVTICVVTAVVTFVLWPVLSRVSVLSHMGTGLDGWLSQAIDTVGLASFAVAATQNGIRRKCHPGTTIVICCITCSGGGILRDVLTSSPVMALSSHAQMYVSTAAIGSGAYLLARRYSKDPLFRICVGFFTVIILRLLACLYDLRLPRMV 430          
BLAST of mRNA_Ecto-sp13_S_contig18680.5869.1 vs. uniprot
Match: D8LLZ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLZ7_ECTSI)

HSP 1 Score: 200 bits (509), Expect = 9.280e-63
Identity = 98/103 (95.15%), Postives = 102/103 (99.03%), Query Frame = 1
Query:  112 WLSQAIDTVGLASFAVAATQNGIRRKCHPGTTIVICCITCSGGGILRDVLTSSPVMALSSHAQMYVSTAAFGSGAYLLARKYSKDPLFRICAGFFTVVILRLL 420
            WL +AIDT+GLASFAVAATQNGIRRKCHPGTTIVICCITCSGGGILRDVLTSSPVMALSSHAQMYVSTAAFGSGAYLLAR+YSKDPLFR+CAGFFTVVILRLL
Sbjct:   43 WLVEAIDTIGLASFAVAATQNGIRRKCHPGTTIVICCITCSGGGILRDVLTSSPVMALSSHAQMYVSTAAFGSGAYLLARRYSKDPLFRVCAGFFTVVILRLL 145          
BLAST of mRNA_Ecto-sp13_S_contig18680.5869.1 vs. uniprot
Match: A0A835ZGC7_9STRA (UPF0126 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGC7_9STRA)

HSP 1 Score: 150 bits (379), Expect = 2.540e-42
Identity = 75/151 (49.67%), Postives = 102/151 (67.55%), Query Frame = 1
Query:    1 QVEYVTICVVTAVVTFVLWPVLSRVSVLSHMGTGLDGWLSQAIDTVGLASFAVAATQNGIRRKCHPGTTIVICCITCSGGGILRDVLTSSPVMALSSHAQMYVSTAAFGSGAYLLARKYSKDPLFRICAGFFTVVILRLLACLYDLRLPRM 453
            +VEY+ +C+VT++ TF  WP L  + +LS  G+  DG L + +DT+GL +FAV  TQ+GIRR+ HP  T+VI  ITCS GG+ RDV+T +P+  + SHA++Y +TAA GS AYL+AR    DPL R+ AGF   V  R  A   DLRLP +
Sbjct:  117 EVEYLAMCIVTSIATFYAWPHLRHMPILSASGSSDDGALPRWLDTIGLGAFAVVGTQHGIRRRLHPLATVVIATITCSFGGVTRDVMTKAPIRVMHSHAELYATTAAAGSCAYLIARAAVADPLLRMAAGFGVTVAARFAAWTLDLRLPTL 267          
BLAST of mRNA_Ecto-sp13_S_contig18680.5869.1 vs. uniprot
Match: A0A5J4Z897_PORPP (UPF0126 membrane protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z897_PORPP)

HSP 1 Score: 93.2 bits (230), Expect = 1.380e-19
Identity = 54/147 (36.73%), Postives = 78/147 (53.06%), Query Frame = 1
Query:    7 EYVTICVVTAVVTFVLWPVLSRVSVLSHMGTGLDGWLSQAIDTVGLASFAVAATQNGIRRKCHPGTTIVICCITCSGGGILRDVLTSSPVMALSSHAQMYVSTAAFGSGAYLLARKYSKDPLFRICAGFFTVVILRLLACLYDLRLP 447
            EY+ I V T+++ F  WP +S       +G   D +    ID+  L +F+   T NGIR   +P   +V   +TC+ GG++RD     PV  L S+A++Y +TAA GS AY+ AR      + RI  G  +  I+RL A  Y  RLP
Sbjct:  196 EYIAIAVATSLLAFFFWPDVS-----DALGITEDEYFINVIDSWSLGAFSCIGTMNGIRAGYNPLIVLVCAVVTCTFGGVVRDTFLKRPVRVLHSYAEIYATTAAVGSIAYMAARAMQLPLVLRISLGLSSTFIMRLWAMKYGTRLP 337          
BLAST of mRNA_Ecto-sp13_S_contig18680.5869.1 vs. uniprot
Match: A0A0S4JKV7_BODSA (Uncharacterized protein n=2 Tax=Bodo saltans TaxID=75058 RepID=A0A0S4JKV7_BODSA)

HSP 1 Score: 79.3 bits (194), Expect = 4.060e-15
Identity = 40/104 (38.46%), Postives = 58/104 (55.77%), Query Frame = 1
Query:  130 DTVGLASFAVAATQNGIRRKCHPGTTIVICCITCSGGGILRDVLTSSPVMALSSHAQMYVSTAAFGSGAYLLARKYSKDPLFRICAGFFTVVILRLLACLYDLR 441
            DT+G+ +FAV  T   +R       T+V CCITC+GGG++RD L   PV  + +  ++Y   A  G  AYLLAR        R+  G  T + LR+LA  Y+++
Sbjct:  125 DTLGIGAFAVIGTMYAVRMGFGIIITLVCCCITCTGGGVIRDTLVKRPVRVMHNLEEVYAEAAVSGGAAYLLARGAGLPLQVRVLVGAGTTIALRILATKYNIK 228          
BLAST of mRNA_Ecto-sp13_S_contig18680.5869.1 vs. uniprot
Match: K8EPI8_9CHLO (Uncharacterized protein n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8EPI8_9CHLO)

HSP 1 Score: 66.2 bits (160), Expect = 7.910e-10
Identity = 50/151 (33.11%), Postives = 71/151 (47.02%), Query Frame = 1
Query:    7 EYVTICVVTAVVTFVLWP-VLSR-VSVLSHMGTGLDGWLSQAIDTVGLASFAVAATQNGIRRKCHPGTTIVICCITCSGGGILRDVLTSSPVMALSSHAQMYVSTAAFGSGAYLLARKY--SKDPLFRICAGFFTVVILRLLACLYDLRLP 447
            EY+ + +V +  TF  WP VLS+ V     M T L+ WL    D + L  F +      + R   P   + +  ITC+GGG++RDV    PV  L SHA++Y +TA  G+  Y +   +        R      T V LR  A    L+LP
Sbjct:  270 EYLIVALVASFFTFFFWPKVLSKEVRESKAMETALN-WL----DALSLGGFCIIGANAALVRNLGPLLAVALSAITCTGGGVVRDVFLRQPVRVLHSHAELYGTTAIAGAAVYTVFACWFPGVSHNLRCLLAASTTVFLRWRAWKRGLKLP 415          
BLAST of mRNA_Ecto-sp13_S_contig18680.5869.1 vs. uniprot
Match: A0A7S2EWJ0_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EWJ0_TRICV)

HSP 1 Score: 62.4 bits (150), Expect = 1.370e-8
Identity = 34/111 (30.63%), Postives = 53/111 (47.75%), Query Frame = 1
Query:    7 EYVTICVVTAVVTFVLWPVLSRVSVLSHMGTGLDGWLSQAIDTVGLASFAVAATQNGIRRKCHPGTTIVICCITCSGGGILRDVLTSSPVMALSSHAQMYVSTAAFGSGAY 339
            E++ +CV  +  TF+LWP + R      +G      L    D  GL +F+V  TQ G  +   P   ++   ++C+GGGI+RDVL   P   L     +Y +    G+  Y
Sbjct:  155 EFLYVCVAVSASTFLLWPQIER-----RLGWNDSAHLVCLADAFGLGAFSVVGTQKGADKGLPPPLWVLTALVSCTGGGIIRDVLCRRPARVLHPDRTLYATPPVLGAIVY 260          
BLAST of mRNA_Ecto-sp13_S_contig18680.5869.1 vs. uniprot
Match: A0A557RY04_9GAMM (Trimeric intracellular cation channel family protein n=1 Tax=Sedimenticola selenatireducens TaxID=191960 RepID=A0A557RY04_9GAMM)

HSP 1 Score: 60.8 bits (146), Expect = 2.130e-8
Identity = 46/147 (31.29%), Postives = 75/147 (51.02%), Query Frame = 1
Query:   13 VTICVVTAVVTFVLWPVL-SRVSVLSHMGTGLDGWLSQAIDTVGLASFAVAATQNGIRRKCHPGTTIVICCITCSGGGILRDVLTSSPVMALSSHAQMYVSTAAFGSGAYLLARKYSKDPLFRICAGFFTVVILRLLACLYDLRLPR 450
            VT+C+V AV+T+ L P+L SR   L  M            D +GLA+F++  T   +     P   + +  ++ + GGI+RDVL S  ++  S   ++YV+TAA G+ +YL+ +      +      F     LR  A ++ L+LPR
Sbjct:   72 VTLCLVAAVLTYFLAPLLASRYRALIWM------------DAIGLATFSITGTSIALSLGSPPLIAVCMGVMSATFGGIIRDVLCSESLVLTSR--ELYVTTAAAGASSYLVLQLAGVGEIIATLGAFAIGFGLRAAAIVFGLKLPR 204          
BLAST of mRNA_Ecto-sp13_S_contig18680.5869.1 vs. uniprot
Match: A0A1Z5KKM8_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KKM8_FISSO)

HSP 1 Score: 61.2 bits (147), Expect = 3.260e-8
Identity = 50/158 (31.65%), Postives = 74/158 (46.84%), Query Frame = 1
Query:   10 YVTICVVTAVVTFVLWPVLSRVSVLSHMGTGLDGW--LSQAI---DTVGLASFAVAATQNGIRRKCHPGTTIVICCITCSGGGILRDVLTSSPVMALSSHAQMYVSTAAFGSGAYLL------ARKYSKDPLFRICAGFFTVVILRLLACLYDLRLPR 450
            ++++C+ T ++T+V+WP L +            GW    +AI   D +GLA+F V  T+ G      P   IVI  I+C+ GGILRD+L + P   L  +  +Y +    GS  Y L      A   S D        F T ++ RL A    +RLP 
Sbjct:  136 FLSLCLFTTLLTYVVWPRLEQ----------NWGWKDCDKAICVADAIGLAAFVVITTEKGNVYNLPPFYWIVIGFISCTFGGILRDILCARPARVLYPNRTLYATPVLLGSAVYTLCKTSRLAHLLSNDQ--TAALTFCTTLVSRLWAFDNPIRLPH 281          
BLAST of mRNA_Ecto-sp13_S_contig18680.5869.1 vs. uniprot
Match: A0A7S4V2I1_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4V2I1_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 5.170e-8
Identity = 51/156 (32.69%), Postives = 70/156 (44.87%), Query Frame = 1
Query:   10 YVTICVVTAVVTFVLWPVL-SRVSVLSHMGTGLDGWLSQAI-----DTVGLASFAVAATQNGIRRKCHPGTTIVICCITCSGGGILRDVLTSSPVMALSSHAQMYVSTAAFGSGAY-LLARKYSKDPLFRICA--GFFTVVILRLLACLYDLRLPR 450
            Y  IC VT ++TF+LWP L SR+           GW   A+     D  GL +FAV  TQ  +     P    V+  ITC+ GGI RDV+       +  +  +Y +    GS AY LL +K   D   ++ A   F      R+L+     RLP 
Sbjct:  147 YFKICAVTTIMTFLLWPTLESRL-----------GWKDSAVPICTADAFGLGAFAVIGTQKAVELGLDPIMWPVVGLITCTFGGITRDVMCLQNPRVMYPYRTLYATAPLLGSIAYTLLMQKSLVDVDTQVAATISFMVTFTTRVLSFNRSWRLPH 291          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18680.5869.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5JCP2_9PHAE1.850e-9697.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLZ7_ECTSI9.280e-6395.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZGC7_9STRA2.540e-4249.67UPF0126 domain-containing protein n=1 Tax=Tribonem... [more]
A0A5J4Z897_PORPP1.380e-1936.73UPF0126 membrane protein n=1 Tax=Porphyridium purp... [more]
A0A0S4JKV7_BODSA4.060e-1538.46Uncharacterized protein n=2 Tax=Bodo saltans TaxID... [more]
K8EPI8_9CHLO7.910e-1033.11Uncharacterized protein n=1 Tax=Bathycoccus prasin... [more]
A0A7S2EWJ0_TRICV1.370e-830.63Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A557RY04_9GAMM2.130e-831.29Trimeric intracellular cation channel family prote... [more]
A0A1Z5KKM8_FISSO3.260e-831.65Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A7S4V2I1_9STRA5.170e-832.69Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18680contigEcto-sp13_S_contig18680:110..986 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score93.6
Seed ortholog evalue8.6e-17
Seed eggNOG ortholog296587.XP_002503764.1
Model size459
Hectar predicted targeting categorysignal peptide
Exons2
EggNOG free text desc.UPF0126 domain
EggNOG OGs2B6TB@1,2S0MY@2759
Ec32 ortholog descriptionUncharacterised domain UPF0126
Ec32 orthologEc-14_002260.1
Cds size459
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462957.7125928-CDS-Ecto-sp13_S_contig18680:109..3641681462957.7125928-CDS-Ecto-sp13_S_contig18680:109..364Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18680 110..364 +
1681462957.7269714-CDS-Ecto-sp13_S_contig18680:782..9861681462957.7269714-CDS-Ecto-sp13_S_contig18680:782..986Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18680 783..986 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18680.5869.1prot_Ecto-sp13_S_contig18680.5869.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18680 110..986 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18680.5869.1

>prot_Ecto-sp13_S_contig18680.5869.1 ID=prot_Ecto-sp13_S_contig18680.5869.1|Name=mRNA_Ecto-sp13_S_contig18680.5869.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=153bp
QVEYVTICVVTAVVTFVLWPVLSRVSVLSHMGTGLDGWLSQAIDTVGLAS
FAVAATQNGIRRKCHPGTTIVICCITCSGGGILRDVLTSSPVMALSSHAQ
MYVSTAAFGSGAYLLARKYSKDPLFRICAGFFTVVILRLLACLYDLRLPR
MV*
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mRNA from alignment at Ecto-sp13_S_contig18680:110..986+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18680.5869.1 ID=mRNA_Ecto-sp13_S_contig18680.5869.1|Name=mRNA_Ecto-sp13_S_contig18680.5869.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=877bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18680:110..986+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTCGAGTACGTGACAATATGCGTGGTAACAGCGGTTGTAACGTTCGT GCTGTGGCCGGTGCTGTCTCGAGTGTCCGTCCTATCGCACATGGGCACCG GCCTGGACGGCTGGCTCTCCCAGGCGATAGACACGGTCGGGCTGGCTTCC TTCGCGGTGGCGGCGACCCAGAACGGCATCCGAAGGAAGTGTCACCCGGG CACGACGATCGTCATCTGCTGCATCACGTGCTCCGGCGGGGGAATCCTGC GAGACGTAGGTTTTGAAACCGCAGTTTGTGAAAGAGTGAGAGTACTTGCT TCCTACCGCTGGTCGTGGTGCGGTGCATTTTTGTGCGAATCTGACACACG GTTGGAGACACCCCGAGAAAACGCGGTTTTCATGCGTTTTTTCCTCAAGG CATCAATTTGCAGTGGTTTTGAGAGTTTTTTTTCTTTGACTATCGGGTAC AACAGGATGTGCACATTTGTGCAGCTGTCGTTTTGGAAGAGCGCGTCGGG AGGGCGGCTGCTAATGCCTTCGACAACATATGCTCATGAGGGGGGAGCGT GATCAGTAACAACATGGGTACCAGCTTTCACAAGCAGCACGTGTTATTCG AGCAACAGCAGCAGACCGCGTCGTCTAATATCCCGTTTTAATCAATGATG CTGGCCGTCTCCAAACTTTGCAGGTCCTGACCTCGTCGCCTGTGATGGCG CTCTCGTCACACGCCCAGATGTACGTCAGCACGGCCGCCTTTGGTTCGGG AGCGTACCTGCTCGCTAGGAAATATTCGAAAGACCCGCTCTTCCGAATCT GCGCGGGGTTCTTCACTGTGGTCATCTTGCGCCTGCTGGCGTGTTTGTAC GACCTCCGCCTCCCTCGAATGGTGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18680:110..986+

>mRNA_Ecto-sp13_S_contig18680.5869.1 ID=mRNA_Ecto-sp13_S_contig18680.5869.1|Name=mRNA_Ecto-sp13_S_contig18680.5869.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=459bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18680:110..986+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTCGAGTACGTGACAATATGCGTGGTAACAGCGGTTGTAACGTTCGT
GCTGTGGCCGGTGCTGTCTCGAGTGTCCGTCCTATCGCACATGGGCACCG
GCCTGGACGGCTGGCTCTCCCAGGCGATAGACACGGTCGGGCTGGCTTCC
TTCGCGGTGGCGGCGACCCAGAACGGCATCCGAAGGAAGTGTCACCCGGG
CACGACGATCGTCATCTGCTGCATCACGTGCTCCGGCGGGGGAATCCTGC
GAGACGTCCTGACCTCGTCGCCTGTGATGGCGCTCTCGTCACACGCCCAG
ATGTACGTCAGCACGGCCGCCTTTGGTTCGGGAGCGTACCTGCTCGCTAG
GAAATATTCGAAAGACCCGCTCTTCCGAATCTGCGCGGGGTTCTTCACTG
TGGTCATCTTGCGCCTGCTGGCGTGTTTGTACGACCTCCGCCTCCCTCGA
ATGGTGTAG
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