mRNA_Ecto-sp13_S_contig18680.5869.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig18680.5869.1 vs. uniprot
Match: A0A6H5JCP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCP2_9PHAE) HSP 1 Score: 293 bits (751), Expect = 1.850e-96 Identity = 148/152 (97.37%), Postives = 150/152 (98.68%), Query Frame = 1
Query: 1 QVEYVTICVVTAVVTFVLWPVLSRVSVLSHMGTGLDGWLSQAIDTVGLASFAVAATQNGIRRKCHPGTTIVICCITCSGGGILRDVLTSSPVMALSSHAQMYVSTAAFGSGAYLLARKYSKDPLFRICAGFFTVVILRLLACLYDLRLPRMV 456
QVEYVTICVVTAVVTFVLWPVLSRVSVLSHMGTGLDGWLSQAIDTVGLASFAVAATQNGIRRKCHPGTTIVICCITCSGGGILRDVLTSSPVMALSSHAQMYVSTAA GSGAYLLAR+YSKDPLFRIC GFFTV+ILRLLACLYDLRLPRMV
Sbjct: 279 QVEYVTICVVTAVVTFVLWPVLSRVSVLSHMGTGLDGWLSQAIDTVGLASFAVAATQNGIRRKCHPGTTIVICCITCSGGGILRDVLTSSPVMALSSHAQMYVSTAAIGSGAYLLARRYSKDPLFRICVGFFTVIILRLLACLYDLRLPRMV 430
BLAST of mRNA_Ecto-sp13_S_contig18680.5869.1 vs. uniprot
Match: D8LLZ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLZ7_ECTSI) HSP 1 Score: 200 bits (509), Expect = 9.280e-63 Identity = 98/103 (95.15%), Postives = 102/103 (99.03%), Query Frame = 1
Query: 112 WLSQAIDTVGLASFAVAATQNGIRRKCHPGTTIVICCITCSGGGILRDVLTSSPVMALSSHAQMYVSTAAFGSGAYLLARKYSKDPLFRICAGFFTVVILRLL 420
WL +AIDT+GLASFAVAATQNGIRRKCHPGTTIVICCITCSGGGILRDVLTSSPVMALSSHAQMYVSTAAFGSGAYLLAR+YSKDPLFR+CAGFFTVVILRLL
Sbjct: 43 WLVEAIDTIGLASFAVAATQNGIRRKCHPGTTIVICCITCSGGGILRDVLTSSPVMALSSHAQMYVSTAAFGSGAYLLARRYSKDPLFRVCAGFFTVVILRLL 145
BLAST of mRNA_Ecto-sp13_S_contig18680.5869.1 vs. uniprot
Match: A0A835ZGC7_9STRA (UPF0126 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGC7_9STRA) HSP 1 Score: 150 bits (379), Expect = 2.540e-42 Identity = 75/151 (49.67%), Postives = 102/151 (67.55%), Query Frame = 1
Query: 1 QVEYVTICVVTAVVTFVLWPVLSRVSVLSHMGTGLDGWLSQAIDTVGLASFAVAATQNGIRRKCHPGTTIVICCITCSGGGILRDVLTSSPVMALSSHAQMYVSTAAFGSGAYLLARKYSKDPLFRICAGFFTVVILRLLACLYDLRLPRM 453
+VEY+ +C+VT++ TF WP L + +LS G+ DG L + +DT+GL +FAV TQ+GIRR+ HP T+VI ITCS GG+ RDV+T +P+ + SHA++Y +TAA GS AYL+AR DPL R+ AGF V R A DLRLP +
Sbjct: 117 EVEYLAMCIVTSIATFYAWPHLRHMPILSASGSSDDGALPRWLDTIGLGAFAVVGTQHGIRRRLHPLATVVIATITCSFGGVTRDVMTKAPIRVMHSHAELYATTAAAGSCAYLIARAAVADPLLRMAAGFGVTVAARFAAWTLDLRLPTL 267
BLAST of mRNA_Ecto-sp13_S_contig18680.5869.1 vs. uniprot
Match: A0A5J4Z897_PORPP (UPF0126 membrane protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z897_PORPP) HSP 1 Score: 93.2 bits (230), Expect = 1.380e-19 Identity = 54/147 (36.73%), Postives = 78/147 (53.06%), Query Frame = 1
Query: 7 EYVTICVVTAVVTFVLWPVLSRVSVLSHMGTGLDGWLSQAIDTVGLASFAVAATQNGIRRKCHPGTTIVICCITCSGGGILRDVLTSSPVMALSSHAQMYVSTAAFGSGAYLLARKYSKDPLFRICAGFFTVVILRLLACLYDLRLP 447
EY+ I V T+++ F WP +S +G D + ID+ L +F+ T NGIR +P +V +TC+ GG++RD PV L S+A++Y +TAA GS AY+ AR + RI G + I+RL A Y RLP
Sbjct: 196 EYIAIAVATSLLAFFFWPDVS-----DALGITEDEYFINVIDSWSLGAFSCIGTMNGIRAGYNPLIVLVCAVVTCTFGGVVRDTFLKRPVRVLHSYAEIYATTAAVGSIAYMAARAMQLPLVLRISLGLSSTFIMRLWAMKYGTRLP 337
BLAST of mRNA_Ecto-sp13_S_contig18680.5869.1 vs. uniprot
Match: A0A0S4JKV7_BODSA (Uncharacterized protein n=2 Tax=Bodo saltans TaxID=75058 RepID=A0A0S4JKV7_BODSA) HSP 1 Score: 79.3 bits (194), Expect = 4.060e-15 Identity = 40/104 (38.46%), Postives = 58/104 (55.77%), Query Frame = 1
Query: 130 DTVGLASFAVAATQNGIRRKCHPGTTIVICCITCSGGGILRDVLTSSPVMALSSHAQMYVSTAAFGSGAYLLARKYSKDPLFRICAGFFTVVILRLLACLYDLR 441
DT+G+ +FAV T +R T+V CCITC+GGG++RD L PV + + ++Y A G AYLLAR R+ G T + LR+LA Y+++
Sbjct: 125 DTLGIGAFAVIGTMYAVRMGFGIIITLVCCCITCTGGGVIRDTLVKRPVRVMHNLEEVYAEAAVSGGAAYLLARGAGLPLQVRVLVGAGTTIALRILATKYNIK 228
BLAST of mRNA_Ecto-sp13_S_contig18680.5869.1 vs. uniprot
Match: K8EPI8_9CHLO (Uncharacterized protein n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8EPI8_9CHLO) HSP 1 Score: 66.2 bits (160), Expect = 7.910e-10 Identity = 50/151 (33.11%), Postives = 71/151 (47.02%), Query Frame = 1
Query: 7 EYVTICVVTAVVTFVLWP-VLSR-VSVLSHMGTGLDGWLSQAIDTVGLASFAVAATQNGIRRKCHPGTTIVICCITCSGGGILRDVLTSSPVMALSSHAQMYVSTAAFGSGAYLLARKY--SKDPLFRICAGFFTVVILRLLACLYDLRLP 447
EY+ + +V + TF WP VLS+ V M T L+ WL D + L F + + R P + + ITC+GGG++RDV PV L SHA++Y +TA G+ Y + + R T V LR A L+LP
Sbjct: 270 EYLIVALVASFFTFFFWPKVLSKEVRESKAMETALN-WL----DALSLGGFCIIGANAALVRNLGPLLAVALSAITCTGGGVVRDVFLRQPVRVLHSHAELYGTTAIAGAAVYTVFACWFPGVSHNLRCLLAASTTVFLRWRAWKRGLKLP 415
BLAST of mRNA_Ecto-sp13_S_contig18680.5869.1 vs. uniprot
Match: A0A7S2EWJ0_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EWJ0_TRICV) HSP 1 Score: 62.4 bits (150), Expect = 1.370e-8 Identity = 34/111 (30.63%), Postives = 53/111 (47.75%), Query Frame = 1
Query: 7 EYVTICVVTAVVTFVLWPVLSRVSVLSHMGTGLDGWLSQAIDTVGLASFAVAATQNGIRRKCHPGTTIVICCITCSGGGILRDVLTSSPVMALSSHAQMYVSTAAFGSGAY 339
E++ +CV + TF+LWP + R +G L D GL +F+V TQ G + P ++ ++C+GGGI+RDVL P L +Y + G+ Y
Sbjct: 155 EFLYVCVAVSASTFLLWPQIER-----RLGWNDSAHLVCLADAFGLGAFSVVGTQKGADKGLPPPLWVLTALVSCTGGGIIRDVLCRRPARVLHPDRTLYATPPVLGAIVY 260
BLAST of mRNA_Ecto-sp13_S_contig18680.5869.1 vs. uniprot
Match: A0A557RY04_9GAMM (Trimeric intracellular cation channel family protein n=1 Tax=Sedimenticola selenatireducens TaxID=191960 RepID=A0A557RY04_9GAMM) HSP 1 Score: 60.8 bits (146), Expect = 2.130e-8 Identity = 46/147 (31.29%), Postives = 75/147 (51.02%), Query Frame = 1
Query: 13 VTICVVTAVVTFVLWPVL-SRVSVLSHMGTGLDGWLSQAIDTVGLASFAVAATQNGIRRKCHPGTTIVICCITCSGGGILRDVLTSSPVMALSSHAQMYVSTAAFGSGAYLLARKYSKDPLFRICAGFFTVVILRLLACLYDLRLPR 450
VT+C+V AV+T+ L P+L SR L M D +GLA+F++ T + P + + ++ + GGI+RDVL S ++ S ++YV+TAA G+ +YL+ + + F LR A ++ L+LPR
Sbjct: 72 VTLCLVAAVLTYFLAPLLASRYRALIWM------------DAIGLATFSITGTSIALSLGSPPLIAVCMGVMSATFGGIIRDVLCSESLVLTSR--ELYVTTAAAGASSYLVLQLAGVGEIIATLGAFAIGFGLRAAAIVFGLKLPR 204
BLAST of mRNA_Ecto-sp13_S_contig18680.5869.1 vs. uniprot
Match: A0A1Z5KKM8_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KKM8_FISSO) HSP 1 Score: 61.2 bits (147), Expect = 3.260e-8 Identity = 50/158 (31.65%), Postives = 74/158 (46.84%), Query Frame = 1
Query: 10 YVTICVVTAVVTFVLWPVLSRVSVLSHMGTGLDGW--LSQAI---DTVGLASFAVAATQNGIRRKCHPGTTIVICCITCSGGGILRDVLTSSPVMALSSHAQMYVSTAAFGSGAYLL------ARKYSKDPLFRICAGFFTVVILRLLACLYDLRLPR 450
++++C+ T ++T+V+WP L + GW +AI D +GLA+F V T+ G P IVI I+C+ GGILRD+L + P L + +Y + GS Y L A S D F T ++ RL A +RLP
Sbjct: 136 FLSLCLFTTLLTYVVWPRLEQ----------NWGWKDCDKAICVADAIGLAAFVVITTEKGNVYNLPPFYWIVIGFISCTFGGILRDILCARPARVLYPNRTLYATPVLLGSAVYTLCKTSRLAHLLSNDQ--TAALTFCTTLVSRLWAFDNPIRLPH 281
BLAST of mRNA_Ecto-sp13_S_contig18680.5869.1 vs. uniprot
Match: A0A7S4V2I1_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4V2I1_9STRA) HSP 1 Score: 60.8 bits (146), Expect = 5.170e-8 Identity = 51/156 (32.69%), Postives = 70/156 (44.87%), Query Frame = 1
Query: 10 YVTICVVTAVVTFVLWPVL-SRVSVLSHMGTGLDGWLSQAI-----DTVGLASFAVAATQNGIRRKCHPGTTIVICCITCSGGGILRDVLTSSPVMALSSHAQMYVSTAAFGSGAY-LLARKYSKDPLFRICA--GFFTVVILRLLACLYDLRLPR 450
Y IC VT ++TF+LWP L SR+ GW A+ D GL +FAV TQ + P V+ ITC+ GGI RDV+ + + +Y + GS AY LL +K D ++ A F R+L+ RLP
Sbjct: 147 YFKICAVTTIMTFLLWPTLESRL-----------GWKDSAVPICTADAFGLGAFAVIGTQKAVELGLDPIMWPVVGLITCTFGGITRDVMCLQNPRVMYPYRTLYATAPLLGSIAYTLLMQKSLVDVDTQVAATISFMVTFTTRVLSFNRSWRLPH 291 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18680.5869.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig18680.5869.1 >prot_Ecto-sp13_S_contig18680.5869.1 ID=prot_Ecto-sp13_S_contig18680.5869.1|Name=mRNA_Ecto-sp13_S_contig18680.5869.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=153bp QVEYVTICVVTAVVTFVLWPVLSRVSVLSHMGTGLDGWLSQAIDTVGLASback to top mRNA from alignment at Ecto-sp13_S_contig18680:110..986+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig18680.5869.1 ID=mRNA_Ecto-sp13_S_contig18680.5869.1|Name=mRNA_Ecto-sp13_S_contig18680.5869.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=877bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18680:110..986+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18680:110..986+ >mRNA_Ecto-sp13_S_contig18680.5869.1 ID=mRNA_Ecto-sp13_S_contig18680.5869.1|Name=mRNA_Ecto-sp13_S_contig18680.5869.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=459bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18680:110..986+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |