mRNA_Ecto-sp13_S_contig1865.5853.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1865.5853.1
Unique NamemRNA_Ecto-sp13_S_contig1865.5853.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1865.5853.1 vs. uniprot
Match: D8LM03_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM03_ECTSI)

HSP 1 Score: 147 bits (371), Expect = 1.490e-43
Identity = 78/79 (98.73%), Postives = 78/79 (98.73%), Query Frame = 1 
Query:    1 MDQPSWMQNTGQAAAPPGTSSGGAPAQQNAGSRSGDATVVRSVFHFVNIGVAVMMAASAAFGLIDLRNFENVVLSVYLM 237
            MDQPSWMQNTGQAAAPPGTSSGGAPAQQNAGSRSGDATVVRSVFHFVNIGVAVMMAASAAFGLID RNFENVVLSVYLM
Sbjct:    1 MDQPSWMQNTGQAAAPPGTSSGGAPAQQNAGSRSGDATVVRSVFHFVNIGVAVMMAASAAFGLIDFRNFENVVLSVYLM 79
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BLAST of mRNA_Ecto-sp13_S_contig1865.5853.1 vs. uniprot
Match: A0A836CK83_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK83_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 6.750e-8
Identity = 39/82 (47.56%), Postives = 52/82 (63.41%), Query Frame = 1 
Query:    1 MDQPSWMQN--TGQAAAPPGTSSGGAPAQQNAGSRSGDATVVRSVFHFVNIGVAVMMAASAAFGLIDLRNFENV--VLSVYL 234
            MDQPSWMQ+  TG A A P  +S    A  ++G  +G   +VR+ FHFVNIG+ V+MA SA  G+I++ N + V   L VYL
Sbjct:    1 MDQPSWMQDGATGGAPAAPAAASTRPAAAVDSGGSTG--AIVRNGFHFVNIGLCVLMAFSAVLGVIEITNAQVVDFFLGVYL 80
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1865.5853.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LM03_ECTSI1.490e-4398.73Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CK83_9STRA6.750e-847.56Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1865contigEcto-sp13_S_contig1865:11384..15324 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score147.9
Seed ortholog evalue2e-33
Seed eggNOG ortholog2880.D8LM03
Model size240
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs2D0JF@1,2SEFC@2759
Ec32 ortholog descriptionGolgi apparatus membrane protein TVP15
Ec32 orthologEc-14_002340.1
Cds size240
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462956.4323537-CDS-Ecto-sp13_S_contig1865:11383..114931681462956.4323537-CDS-Ecto-sp13_S_contig1865:11383..11493Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1865 11384..11493 +
1681462956.447582-CDS-Ecto-sp13_S_contig1865:15194..153241681462956.447582-CDS-Ecto-sp13_S_contig1865:15194..15324Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1865 15195..15324 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1865.5853.1prot_Ecto-sp13_S_contig1865.5853.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1865 11384..15324 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1865.5853.1

>prot_Ecto-sp13_S_contig1865.5853.1 ID=prot_Ecto-sp13_S_contig1865.5853.1|Name=mRNA_Ecto-sp13_S_contig1865.5853.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=80bp
MDQPSWMQNTGQAAAPPGTSSGGAPAQQNAGSRSGDATVVRSVFHFVNIG
VAVMMAASAAFGLIDLRNFENVVLSVYLM*
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mRNA from alignment at Ecto-sp13_S_contig1865:11384..15324+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1865.5853.1 ID=mRNA_Ecto-sp13_S_contig1865.5853.1|Name=mRNA_Ecto-sp13_S_contig1865.5853.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3941bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1865:11384..15324+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACCAGCCGTCTTGGATGCAAAACACTGGGCAGGCAGCAGCGCCCCC
TGGAACCTCTTCGGGCGGCGCTCCCGCTCAACAAAACGCCGGAAGTCGGT
CGGGAGACGCGTGAGTTTTTTGCCCAATGTTTTCGGTTCGGAGAGAACGA
AGACCCGCTCGCTTGCTCTTCCCACGACGTTGTTGGACACTACCTTGGGT
GACCAGCCCCATGTACCTACCTTGCTGTCCTGCAGTGGTGATTATTTATG
CAACCAACGCTAAGTGTTGGTATTGCATAGTGTACTAATGCAAGAGAGCA
TAGCATATGTGCACGTTGACGACCCGCGCGTACGCTGCTGCGGCGAAATA
AGCCGTCACGGCACACACAGCAGAGGTGAGTTGCATACGGAGGGGCATGC
AACACGCACTATAACACAACCGAAGGTGACCCCCATGATGTGATGGCCGC
AAAAAGTAGCCATTAGGAAGGCGCGTTGGACACGCGTCAGACACAAAACA
TTAGCCATCCGTGGCCTGCTCTCCTACAACGGTACATTCTGTAGGCGTAG
AATGGATACGCGCCTCATGACCCACTCCCCGCCTCCCGCGCGCAGGAGGG
CACGGAACAACCGATCTGCGGTCGGCGGTATTGGGACCGTGGCCGTGACC
TGATTGTCGTTCACTTGCCTCATAATACTCTGTTATTTTCGCATGACGGC
GTTTCCTCTGCCGCTCCTGCGAACCAAGCAAAGAAGACACACCAGGATTC
GAAAACACCAGCAGTGAGCGAGAATCCACCACACGCTTCGAAGTACCTCG
CAGCAGTGTAGGATGGATCAAGTTTGATGGAGTCCCATTATAATCGCCAT
AAAATCACTGGGTGCACACACGGCCTCTCCTCTGAGAGCTGTGTTCATGT
GTGCGATTTTGTCTTTTCAAAGGCTCGGCCGACCGATTTAATCTCTCCAA
CGGCTCGGCCCGTTTCTGGCTGCTACTGACTATGTGAAGGATGACTCCTT
AAATAGATTGCACTATCAATAAAACTCCACGACAAATTCTCTCGCAACAC
AAGGTCGCAAGCACCTGATTGCCGCCTGTCCGCCAAACTTACCCAAAACC
CACCACCACACCAGCGAGGGACACTCTCAACGGTCCTATGCAGCTCGTTT
AGCAGGTGTTGGGACCGTAGCCGTGACCTGATTGTCGTTCAGTTGCCTTC
GCTTGCTGTTTTCGCAGCGCGGCGTTCCCTCTTTGCTTGGTTCGCAGCAC
GGCCTTGAGACTCGGGGCCGTGCATGCGAACCGAGCAAAGAGGAAACGCC
ACGATGCGAAAGCAGCAGGCGAAGGCAAGTGAACGACAATCCAACGCACG
CTTCGAAATAACGCGCAGCAGTGTAGGATGTATCACGTTTGGTGGATGTC
CCAATACCGTCGCCATCAATCCCACGGGTGCACACACGGACACACGGCCT
TCTTCTGAGAGCTGTGTTCGTGCGTGCGATTTTGTCTCTCCAAAGGCTTG
GCCTGCCGATGTAATCTCTCCAACGGCTCGGCCCGTTGCTGGCTGCTACT
GACTACTGTGTGCAGCACTCCGAAAGATAAAGATTGCATTTACACCTTCT
CGACGAATTCTCCCACAACACGAGGTCGGAAGTACCCGCTTGCCGCCTGT
CCGCCAAACTTACCGGCAACCCACCACACTAGCGAGGGGCATTCTCAACG
GTCCACCCAGCTCTTTGTAAACAGTCGAAGTGGTTTTACACGCACGCCTT
TGAGTACCCGAACGAGAAAGCAAAGCCAAAGTACAGTAAGAAAAATGCAT
CGTGTCTTCCGATCACCACGGTGTATTGGTGGAATACAAACGGTTGGCAC
TAGAAGATACGACAGATACCAAGTACAACATAACGGGTCGGGGCTCAATT
TTTTGCTTCGTCGCCCCCGTCGAGCACAGCTGTTAGGATCCACCGCTGAG
CTGTGTTTGTCCCAGCCAGTTGTTGGCATTTTTCGCGTCAATCTCAACGT
CTTTCTCTCCAAGAATTTTTTCCTTTTCACGGCCTACGGCAGTTCTGTGC
TGTGTGGGTGTAGACGATCGATTCAACTGGGACGTGATCGAGGAACCAGG
GCTTCCGCATTGGTGTTCATAGGTGCTCGGTTGCTCTCTCACGCAAGGGC
ATGTGAGCTCACTTCGGGTACGAACACGTGCCTTTCTCAGATTACGCAAG
AGATTTTCAGCAGCAGCAACAGCACACCTACGGTACACACACCTCGTATT
GACTGACGGTGGTGCCGCCGACAACAACTGCAGCAACTTTGCCTTGCCAC
GGTCTGGGTCGGCACAGCATTTTTTCAAGCATACATTTCCCGTATTCGAA
GCGCATTTTTTTTTTCCTTGAAAAGATTGTATGTGCCCCAGATCATGTCA
AGGTTGTTGTTCGTGTTTGTCGGCGGCACCGCATTGCACCCCACAAGTCT
TCAAAGGCACGACGCAAGCGTCGAGACCATGAGGAATGCCGCCGCAGAAT
TGAGTGCCTGCGATCCCGTGTTTCGGTTGACGGTACAAATCTACCGCTTT
TCACCACTCAAGCTTGGTGGCACAGGATTTAACCCTACGCTCGGGGGAGG
AATGTGGAGAAGGAGGGTCCGATCACACCCAGCAATGCCCATCCGAATCC
TTGTGATGTGAGGAAAGTGCTCAGGGGGCACGCCTCCGAAACGAACCCTG
TGGGTAATTCACCTCTGCTGTCTAAACCTGAGTGGTAAGGGTTAGTCCCC
ACGACCTTCTTCCACGATGTTGACAAGTTTGACATTCAGTAGCTGCTGCT
GCACCTTAGTCCCCTCTACCTGCTCCTAAAACGCTCCAGATTCAGCGCAG
CTGTCAACTTGAGGATCATTGGCCATGCCCTCATTTTACCGCCCTTTTCT
CGCTGCTGGTCGTGGCCTTGCGCGACACATGGATTGCCCGAGGTCGCTTT
TCGCGCATTAGCGGCGAGTTTGGATTCTCGTAGGTCGTTTTTTTTTTTTT
CTCAGTATGACCCAGCGAATCCATCTCTTTATCTAAGAAAAGAGTCCAAG
ATACATCATTAACAATGAATCCATAGCGTCAGCGAAGTTTCGGTATTTCC
ACGATTTCCCGAGCAGCACACAGCAGCCATGTCTCCCCCGTGGGTCGTTC
TTTCAATTCGAAACACCTGTTCGACCAACGAAAACTGTTTCAAGAAGTGC
TGTACCTGCGTCCAAGCGTTGCCGCCGACAAATCCTACGCCAGCCTCACT
GGTGTTGAGGCTCTCGCTTGGGATCAGACTTTTGGTTCCGGAGTTGGTGG
CGACACATGGCTTTGCCAGATGTGTGTGTCGCATAGGCGCTCGACGCCCT
TGTACCAATTTCGAGTCCAGTGCTGCGGTTGAGATTGATTCGTGGGCCAC
GTAGCCGCCGGTCGTGTTCCTTCTGGCGTTCCCTAACTTCTGCGGCGAAA
TCACCGCGCTTGAATCCTGTTGGTTACCAAAGTATTGTTTTTTCCCTTAG
TCAAACGCATGTTTCTCGCGGGAGACACGCTGTATTTGTGCTTGCCGATT
CCCCCGATTTGAAGGGGCGTATCGATGCCCTGCGTGACGACGGGAAGTTG
CGGAAGTTTCCTGGGTAGTACATAGCATGCGCGATGTTTTGTTGGCAAAT
ACGACTGTACACCACGGCAACAGCTTCAAGAACGAAGACCTCGTGCTTCC
ATGGTAATTGTGCTCAAGCCAGGCCCATCCCTTTGCATGGTGGGTTTCCA
CCCTCTGCCCGTTGCGTTGTTCCCCGTGCCGTCCGCATGTTTCATCTGGG
TGCGATCACAGGACGGTTGTCCGATCCGTTTTCCACTTCGTCAACATCGG
TGTGGCGGTCATGATGGCGGCCTCGGCGGCCTTCGGGTTGATCGACTTGA
GGAACTTCGAGAACGTAGTGTTGTCGGTCTATCTCATGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1865:11384..15324+

>mRNA_Ecto-sp13_S_contig1865.5853.1 ID=mRNA_Ecto-sp13_S_contig1865.5853.1|Name=mRNA_Ecto-sp13_S_contig1865.5853.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=240bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1865:11384..15324+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACCAGCCGTCTTGGATGCAAAACACTGGGCAGGCAGCAGCGCCCCC
TGGAACCTCTTCGGGCGGCGCTCCCGCTCAACAAAACGCCGGAAGTCGGT
CGGGAGACGCGACGGTTGTCCGATCCGTTTTCCACTTCGTCAACATCGGT
GTGGCGGTCATGATGGCGGCCTCGGCGGCCTTCGGGTTGATCGACTTGAG
GAACTTCGAGAACGTAGTGTTGTCGGTCTATCTCATGTGA
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