prot_Ecto-sp13_S_contig1865.5853.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig1865.5853.1
Unique Name	prot_Ecto-sp13_S_contig1865.5853.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	80

Homology

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BLAST of mRNA_Ecto-sp13_S_contig1865.5853.1 vs. uniprot
Match: D8LM03_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM03_ECTSI)

HSP 1 Score: 147 bits (371), Expect = 1.490e-43
Identity = 78/79 (98.73%), Postives = 78/79 (98.73%), Query Frame = 0

Query:    1 MDQPSWMQNTGQAAAPPGTSSGGAPAQQNAGSRSGDATVVRSVFHFVNIGVAVMMAASAAFGLIDLRNFENVVLSVYLM 79
            MDQPSWMQNTGQAAAPPGTSSGGAPAQQNAGSRSGDATVVRSVFHFVNIGVAVMMAASAAFGLID RNFENVVLSVYLM
Sbjct:    1 MDQPSWMQNTGQAAAPPGTSSGGAPAQQNAGSRSGDATVVRSVFHFVNIGVAVMMAASAAFGLIDFRNFENVVLSVYLM 79

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BLAST of mRNA_Ecto-sp13_S_contig1865.5853.1 vs. uniprot
Match: A0A836CK83_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK83_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 6.750e-8
Identity = 39/82 (47.56%), Postives = 52/82 (63.41%), Query Frame = 0

Query:    1 MDQPSWMQN--TGQAAAPPGTSSGGAPAQQNAGSRSGDATVVRSVFHFVNIGVAVMMAASAAFGLIDLRNFENV--VLSVYL 78
            MDQPSWMQ+  TG A A P  +S    A  ++G  +G   +VR+ FHFVNIG+ V+MA SA  G+I++ N + V   L VYL
Sbjct:    1 MDQPSWMQDGATGGAPAAPAAASTRPAAAVDSGGSTG--AIVRNGFHFVNIGLCVLMAFSAVLGVIEITNAQVVDFFLGVYL 80

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig1865.5853.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig1865.5853.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LM03_ECTSI	1.490e-43	98.73	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A836CK83_9STRA	6.750e-8	47.56	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 43..64
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..42
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 65..79
None	No IPR available	TMHMM	TMhelix		coord: 42..64

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig1865	contig	Ecto-sp13_S_contig1865:11384..15324 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig1865.5853.1	mRNA_Ecto-sp13_S_contig1865.5853.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig1865 11384..15324 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig1865.5853.1 ID=prot_Ecto-sp13_S_contig1865.5853.1|Name=mRNA_Ecto-sp13_S_contig1865.5853.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=80bp
MDQPSWMQNTGQAAAPPGTSSGGAPAQQNAGSRSGDATVVRSVFHFVNIG
VAVMMAASAAFGLIDLRNFENVVLSVYLM*