mRNA_Ecto-sp13_S_contig1865.5852.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1865.5852.1
Unique NamemRNA_Ecto-sp13_S_contig1865.5852.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1865.5852.1 vs. uniprot
Match: D8LM04_ECTSI (CID domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM04_ECTSI)

HSP 1 Score: 921 bits (2380), Expect = 0.000e+0
Identity = 641/756 (84.79%), Postives = 644/756 (85.19%), Query Frame = 2 
Query:  422 MGKVTLEEYIDLFRGKAEQMGEFPDKIIINALTGTAKRHRTDKAQAIATVLQNMLMDPNHPAKHKLPICFLVDSLVKNITDPFADLFENGLTRWFCSAYDAVDEKSKKHLGRVVATWEVQSIFSADKRKEIQRYMLNAKPAAASLXXXXXXXXXXXXXXXXXXXXXXXXXXXPLPTVAPYQPPXXXXXXXXXXXXXXXXXXXXXXXXXXASAVAAPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAMVDSRMKQLLDQQLLELGESSTMSLDDLWRTNAELASGFRLVAQAQVHEQLGLPXXXXXXXXXXXXXXXXXXXXXXXHQTAPPLPQDFGRAVQVANEVAAGARVALNASLRGDLSGAQVQAAEAAGKAAMLACLLGGDAAAAVGGGFGGAGAGVGVYLADLDPLDVRSLARGNPAAVRRLYGEGFPFWCKQDGTRFAKQAQLDAHMDLLFRRKHARREQKGVAASREWYCTDEEWMTDFGRLAPPAGLGAGDXXXXXXXXXXXXXXXXXXXXXXXXXDGSKSCVPADERFSKCRICGDRFLMFYDNDEEEWMYRNACYVTVKGGGEGEDGAXXXXXXXE--AVGAPGEAAGGARQIIVHKLCLDVSGLRDKDEITWADLMPGTPRQKKRPAEGGDALDAAFFGEGGDDAAEQEDEKDGSGETGDSSGTRVXXXXXXXXXXXXXXXXXXXXXXXXXXXPPLKRAKAEGAAEEENRFGEVDAMGVVKAEEGGSGAGQGEVYDMDEELDFEA 2683
            MGKVTLEEYIDLFRGKAEQMGEFPDKIIINALTGTAKRHRTDKAQAIATVLQNMLMDP+HPAKHKLPICFLVDSLVKNITDPFADLFENGLTRWFCSAYDAVDEKSKKHLGRVVATWEVQSIFSADKRKEIQRYMLNAKPAAASL XXXXXXXXXXXXXXXXXXXXXXXXXXPLPTVAPYQPP   XXXXXXXXXXXXXXXXXXXXXXXASAVAA  XXXXXXXXXXXXXXXXXXXXXXXXXX  QAMVDSRMKQLLDQ                                                                         QDFGRAVQVANEVAAGARVAL+ASLRGDLSGAQVQAAEAAGKAAMLACLLGGDAAAAVGGG GGAGAGVGVYLADLDPLDVRSLARGNPAAVRRLYGEGFPFWCKQDGTRFAKQAQLDAHMDLLFRRKHARREQKGVAASREWYCTDEEWMTDFGRLAPPAG     XXXXXXXXXXXXXXXXXXXXXXXXXDGSKSCVPADERFSKCRICGDRFLMFYDNDEEEWMYRNACYVTVKGGGE     XXXXXXX   A GAPGEAAGGARQIIVHKLCLDVSGLRDKDEITWADLMPGTPRQKKRPAEGGDALDAAFFGEGGDDAAEQEDEKDG+GETGDSSGT V       XXXXXXXXXXXXXXX     PPLKRAKAEGA EEEN FGEVDA GVVKAEEGGSGAGQGEVYDMDEELDFEA
Sbjct:    1 MGKVTLEEYIDLFRGKAEQMGEFPDKIIINALTGTAKRHRTDKAQAIATVLQNMLMDPSHPAKHKLPICFLVDSLVKNITDPFADLFENGLTRWFCSAYDAVDEKSKKHLGRVVATWEVQSIFSADKRKEIQRYMLNAKPAAASLSXXXXXXXXXXXXXXXXXXXXXXXXXXPLPTVAPYQPPQPQXXXXXXXXXXXXXXXXXXXXXXXASAVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXDIQAMVDSRMKQLLDQ-------------------------------------------------------------------------QDFGRAVQVANEVAAGARVALDASLRGDLSGAQVQAAEAAGKAAMLACLLGGDAAAAVGGGLGGAGAGVGVYLADLDPLDVRSLARGNPAAVRRLYGEGFPFWCKQDGTRFAKQAQLDAHMDLLFRRKHARREQKGVAASREWYCTDEEWMTDFGRLAPPAG----SXXXXXXXXXXXXXXXXXXXXXXXXXDGSKSCVPADERFSKCRICGDRFLMFYDNDEEEWMYRNACYVTVKGGGEXXXXXXXXXXXXXXXAGGAPGEAAGGARQIIVHKLCLDVSGLRDKDEITWADLMPGTPRQKKRPAEGGDALDAAFFGEGGDDAAEQEDEKDGAGETGDSSGTHVSDSGGGHXXXXXXXXXXXXXXXGEDDGPPLKRAKAEGATEEENGFGEVDATGVVKAEEGGSGAGQGEVYDMDEELDFEA 679
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1865.5852.1 vs. uniprot
Match: A0A835ZEB3_9STRA (CID domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEB3_9STRA)

HSP 1 Score: 117 bits (294), Expect = 3.050e-23
Identity = 105/300 (35.00%), Postives = 129/300 (43.00%), Query Frame = 2 
Query: 1709 EGFPFWCKQDGTRFAKQAQLDAHMDLLF------------RRKHARREQKGVAASREWYCTDEEWMTDFGRL---------------------------APPAGL-GAGDXXXXXXXXXXXXXXXXXXXXXXXXX---------------------------------DGSKSCVPADERFSKCRICGDRFLMFYDNDEEEWMYRNACY-------------VTVKGGGEGEDGAXXXXXXXEAVGAPGEAAGGA-RQIIVHKLCLDVSGLRDKDEITWADLMP----GTPRQKKRPAEG 2335
            EG P+ CKQDG RF  QA LDAH+DLLF            +R+  RREQ   AA+R WYCT  +W+TDFG                             AP AG   AGD                     XXXX                                 D +   VPAD+  S+CRICG+ F MFYD DEEEWM+RNACY             V++K         XXXXXXX         +G A   IIVH+LCLD SG+R+ + +  A+L+P    G   ++KR A G
Sbjct:  636 EGRPYLCKQDGQRFLTQAALDAHLDLLFXXXXXXXXXXXXQRRRMRREQTTAAATRPWYCTMAQWVTDFGSKTADQKGRDAAAAQPGAAAAAGEQQPAGAPDAGADAAGDAFGGGAAEQVLSCGTVVQRASXXXXXXXXXXXXXXGISGSAXXXXXXXXXXXXSIGPVDYNSFSVPADDEQSRCRICGEPFEMFYDGDEEEWMFRNACYANLAPEDANSANTVSLKXXXXXXXXXXXXXXXXXXXXXXAPDSGAAPTAIIVHRLCLDASGVREGELLRVANLLPTTAPGAAGKRKRDAAG 935
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1865.5852.1 vs. uniprot
Match: T0QPI6_SAPDV (CID domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QPI6_SAPDV)

HSP 1 Score: 96.3 bits (238), Expect = 7.060e-17
Identity = 56/158 (35.44%), Postives = 78/158 (49.37%), Query Frame = 2 
Query: 1655 DVRSLARGNPAAVRRLYGEGFPFWCKQDGTRFAKQAQLDAHMDLLFRRKHARREQKGVAASREWYCTDEEWMTDFGRLAPPAGLGAGDXXXXXXXXXXXXXXXXXXXXXXXXXDGSKSCVPADERFSKCRICGDRFLMFYDNDEEEWMYRNACYVTVK 2128
            D++   R   A +  LY EG PF C   G RFA + QL  HMD LF+   A+RE+     SR WY  +E+W TDF  ++    +                             D ++  VP DE  +KCRICG++F   +D+DEEEWMY+NA   T++
Sbjct:  359 DIQVNKRRIDANIYLLY-EGLPFVCAGSGVRFANEKQLSEHMDFLFQYNRAQRERTKGGNSRPWYPDEEQWATDFCAVSSTKEVDG-----------VAAIAQQEAEVDKDVLDQAR--VPVDEATTKCRICGEQFSKCWDDDEEEWMYQNAVRGTIQ 502
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1865.5852.1 vs. uniprot
Match: A0A7S2DR18_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DR18_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 4.020e-16
Identity = 62/221 (28.05%), Postives = 99/221 (44.80%), Query Frame = 2 
Query: 1664 SLARGNPAAVRRLYGEGFPFWCKQDGTRFAKQAQLDAHMDLLFRRKHARREQKGV-AASREWYCTDEEWMTDFGRLAPPAGLGAGDXXXXXXXXXXXXXXXXXXXXXXXXXDGSKSCVPADERFSKCRICGDRFLMFYDNDEEEWMYRNACYVTVKGGGEGEDGAXXXXXXXEAVGAPGEAAGGARQIIVHKLCLDVSGLRDKDEITWADLMPGTPRQKKR 2323
            SL + N A + +L+    P +   DG +F  Q QL AH ++L  R   RR++    +ASR W+CT E+W +DF + A  +                                  +  +  D+  +KCRICG+ F MF++++ EEWMYRNA  V ++                + +    +    A  IIVH+ C D   +  +  +  A LMP TP+Q ++
Sbjct:  132 SLNQKNAAVISQLFR--LPHYSSLDGMQFKHQQQLVAHEEMLQTRIRERRDEAAHGSASRPWFCTVEQWCSDFAQDASDS---------------TNPMEGVPVESEDADVPAKEVLIVVDQAVTKCRICGEPFEMFWEDEVEEWMYRNAVRVKIQA-------------TPDPLDPTSDVTSTAVDIIVHRPCSDA--VSTEGIVQVAQLMPETPKQSEK 320
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1865.5852.1 vs. uniprot
Match: F0W6S2_9STRA (Uncharacterized protein AlNc14C26G2558 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W6S2_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 8.480e-15
Identity = 60/203 (29.56%), Postives = 82/203 (40.39%), Query Frame = 2 
Query: 1691 VRRLYGEGFPFWCKQDGTRFAKQAQLDAHMDLLFRRKHARREQKGVAASREWYCTDEEWMTDFGRLAPPAGLGAGDXXXXXXXXXXXXXXXXXXXXXXXXXDGSKSCVPADERFSKCRICGDRFLMFYDNDEEEWMYRNACYVTVKGGGEGEDGAXXXXXXXEAVGAPGEAAGGARQIIVHKLCLDVSGLRDKDEITWADLMP 2299
            +++LY    P  C++ G RF +Q +LDAH+D LF+   + +E+     SR WY   E+W TDF                                      +   + VP DE  +KCRICG+ F   +D DEEEWMY NA   +V    EG                        +  I HK C D   L +   ITW  L+P
Sbjct:  463 IQKLYA-ALPLVCRESGVRFREQKKLDAHLDFLFQYNRSVKERGKGGISRAWYPNKEQWTTDFSTDHTAR------KNTSSSFFDQDSKKMQDDKEDQVLMELRNARVPVDESVTKCRICGEPFEKCWDEDEEEWMYINAIVGSVHAHDEGN----------------------VKSTIFHKYCYDTV-LSNSKCITWEHLIP 635
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1865.5852.1 vs. uniprot
Match: W4G7E6_9STRA (CID domain-containing protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G7E6_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 5.200e-14
Identity = 74/242 (30.58%), Postives = 99/242 (40.91%), Query Frame = 2 
Query: 1691 VRRLYGEGFPFWCKQDGTRFAKQAQLDAHMDLLFRRKHARREQKGVAASREWYCTDEEWMTDFGRLAPPAGLGAGDXXXXXXXXXXXXXXXXXXXXXXXXXDGSKSCVPADERFSKCRICGDRFLMFYDNDEEEWMYRNACYVTVKGGGEGEDGAXXXXXXXEAVGAPGEAAGGARQIIVHKLCLDVSGLRDKDEITW-ADLMPGTPRQ--KKRPAEGGDALDAAFFGEGG---DDAAEQED 2398
            V RLY +  P      G RF  QAQL  HMD LF    A RE+     SR WY  + +W TDF  ++                                  + S+  VP D   +KCRICG+ F   +D DEEEWMY+NA   +++                + V          +Q I HK C D +    K ++   + L PG+P     KRP    +  DA + GE G   DD  EQ+D
Sbjct:  396 VYRLY-DALPHVSTSSGLRFKDQAQLSVHMDFLFHYNRALRERTKGGISRSWYPNEAQWTTDFCAVS-------NSKEETSAGFVQLEDKLTVPDFDKDALNASR--VPVDGSITKCRICGEPFTKCWDEDEEEWMYQNAVVGSIES--------------TDVV---------PKQTIFHKYCYDSAVASSKSKVILPSQLAPGSPVVVGSKRPMSEVEE-DATWRGETGRVDDDKDEQQD 603
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1865.5852.1 vs. uniprot
Match: A0A077X026_9FUNG (CID domain-containing protein n=1 Tax=Lichtheimia ramosa TaxID=688394 RepID=A0A077X026_9FUNG)

HSP 1 Score: 85.9 bits (211), Expect = 1.020e-13
Identity = 53/163 (32.52%), Postives = 76/163 (46.63%), Query Frame = 2 
Query: 1652 LDVRSLARGNPAAVRRLYGEGFPFWCKQDGTRFAK----QAQLDAHMDLLFRRKHARREQKGVAASREWYCTDEEWMTDFG-RLAP-PAGLGAGDXXXXXXXXXXXXXXXXXXXXXXXXXDGSKSCVPADERFSKCRICGDRFLMFYDNDEEEWMYRNACYVT 2122
            L+ + L    P AV  LY  G P  CKQ G R+ K    Q+++DAH+D  FR+    +E+     SR W+ T++EW++  G  LA   A     D                         D     +P +     C ICG+RF+ F+++DEEEWMY+NA  V 
Sbjct:  273 LESKDLQIARPGAVEVLYS-GLPLQCKQCGFRYPKTEQGQSKMDAHLDSHFRQNRRMKERVKRGLSRSWFVTEDEWISGAGGELASHQAPTFLNDSTSSAHPHGHVGSPSAQAGSETLGPDSQVVVMPDENNRKPCPICGERFVDFWNDDEEEWMYKNAVLVN 434
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1865.5852.1 vs. uniprot
Match: A0A024U0Z4_9STRA (CID domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U0Z4_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 1.220e-13
Identity = 62/207 (29.95%), Postives = 82/207 (39.61%), Query Frame = 2 
Query: 1691 VRRLYGEGFPFWCKQDGTRFAKQAQLDAHMDLLFRRKHARREQKGVAASREWYCTDEEWMTDFGRLAPPAGLGAGDXXXXXXXXXXXXXXXXXXXXXXXXXDGSKSCVPADERFSKCRICGDRFLMFYDNDEEEWMYRNACYVTVKGGGEGEDGAXXXXXXXEAVGAPGEAAGGARQIIVHKLCLDVSGLRDKDE-ITWADLMPGTP 2308
            V RLY +  P      G RF  QAQL  HMD LF    A RE+     SR WY  + +W TDF  ++                                  + ++  VP D   +KCRICG+ F   +D DEEEWMY+NA   T++                + V          +  I HK C D +    K E I  + L PG+P
Sbjct:  402 VYRLY-DALPHVSSSSGLRFKDQAQLSKHMDFLFHYNRALRERTKGGISRSWYPNEAQWTTDFCAVS-------NSKEETSAGFVQAEAKTAVPELDKEALNAAR--VPVDGSITKCRICGESFTKCWDEDEEEWMYQNAVVGTIR--------------TNDVV---------PKHTIFHKYCYDSAVASSKSEGILPSQLAPGSP 575
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1865.5852.1 vs. uniprot
Match: A0A8H7QZ07_9FUNG (CID domain-containing protein n=1 Tax=Mucor saturninus TaxID=64648 RepID=A0A8H7QZ07_9FUNG)

HSP 1 Score: 85.9 bits (211), Expect = 1.360e-13
Identity = 52/163 (31.90%), Postives = 73/163 (44.79%), Query Frame = 2 
Query: 1652 LDVRSLARGNPAAVRRLYGEGFPFWCKQDGTRFAK----QAQLDAHMDLLFRRKHARREQKGVAASREWYCTDEEWMTDFGRLAPPAGLGAGDXXXXXXXXXXXXXXXXXXXXXXXXXDGSKSCVPADERFSKCRICGDRFLMFYDNDEEEWMYRNACYVTVK 2128
            LD + L    P A+  LY    P  CKQ G R+ K    QA++DAH+D  FR+    +E+     SR W+ T EEW+   G  +      A                           D     +P D+    C ICG+RF+ F+++DEEEWMY+NA  +  K
Sbjct:  365 LDSKDLQIARPGAIELLYSAK-PLQCKQCGFRYPKTDKGQAKMDAHLDAHFRQNRKMKERVKRGLSRSWFVTVEEWINGEGGESTSQQAPAFLHDGMGHVNSKSTEKSAQPSEETINPDHYTVIMPNDDSRKPCAICGERFIDFWNDDEEEWMYKNAIMIDDK 526
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1865.5852.1 vs. uniprot
Match: A0A8H7STS3_9FUNG (CID domain-containing protein n=1 Tax=Thamnidium elegans TaxID=101142 RepID=A0A8H7STS3_9FUNG)

HSP 1 Score: 84.7 bits (208), Expect = 3.370e-13
Identity = 57/167 (34.13%), Postives = 77/167 (46.11%), Query Frame = 2 
Query: 1652 LDVRSLARGNPAAVRRLYGEGFPFWCKQDGTRFAK----QAQLDAHMDLLFRRKHARREQKGVAASREWYCTDEEWMT-DFGRLAP---PAGLGAGDXXXXXXXXXXXXXXXXXXXXXXXXXDGSKSCVPADERFSKCRICGDRFLMFYDNDEEEWMYRNACYVTVK 2128
            LD + L    P A+  LY    P  CKQ G R+ K    QA++DAH+D  FR+    +E+     SR W+ T EEW+  + G L     PA L  G                          D     +P D+    C ICG+RF+ F+++DEEEWMY+NA  V  K
Sbjct:  378 LDSKDLQIARPGAIELLYSAE-PLQCKQCGFRYPKTEKGQAKMDAHLDSHFRQNRKMKERVKRGLSRSWFVTVEEWINGEGGELTSQQAPAFLHDG---MGHVNNKSTEKSTQPSGEEAINPDHYTVIMPNDDNRKPCAICGERFIDFWNDDEEEWMYKNAIKVEDK 540
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1865.5852.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LM04_ECTSI0.000e+084.79CID domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835ZEB3_9STRA3.050e-2335.00CID domain-containing protein n=1 Tax=Tribonema mi... [more]
T0QPI6_SAPDV7.060e-1735.44CID domain-containing protein n=2 Tax=Saprolegnia ... [more]
A0A7S2DR18_9STRA4.020e-1628.05Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
F0W6S2_9STRA8.480e-1529.56Uncharacterized protein AlNc14C26G2558 n=1 Tax=Alb... [more]
W4G7E6_9STRA5.200e-1430.58CID domain-containing protein n=3 Tax=Aphanomyces ... [more]
A0A077X026_9FUNG1.020e-1332.52CID domain-containing protein n=1 Tax=Lichtheimia ... [more]
A0A024U0Z4_9STRA1.220e-1329.95CID domain-containing protein n=1 Tax=Aphanomyces ... [more]
A0A8H7QZ07_9FUNG1.360e-1331.90CID domain-containing protein n=1 Tax=Mucor saturn... [more]
A0A8H7STS3_9FUNG3.370e-1334.13CID domain-containing protein n=1 Tax=Thamnidium e... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1865contigEcto-sp13_S_contig1865:6362..10397 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score923.7
Seed ortholog evalue5.5e-266
Seed eggNOG ortholog2880.D8LM04
Model size2686
KEGG koko:K07478,ko:K14400
KEGG Pathwayko03015,map03015
Hectar predicted targeting categoryother localisation
GOsGO:0000993,GO:0001098,GO:0001099,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005849,GO:0006139,GO:0006351,GO:0006353,GO:0006366,GO:0006369,GO:0006378,GO:0006379,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0018130,GO:0019438,GO:0019899,GO:0030846,GO:0031123,GO:0031124,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043631,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044877,GO:0046483,GO:0070013,GO:0070063,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0097159,GO:0097659,GO:0098787,GO:0098789,GO:0099122,GO:1901360,GO:1901362,GO:1901363,GO:1901576
Exons4
EggNOG free text desc.termination of RNA polymerase II transcription
EggNOG OGsKOG2071@1,KOG2071@2759
Ec32 ortholog descriptionRNA polymerase II-binding domain
Ec32 orthologEc-14_002360.1
Cds size2265
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03021
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462956.3630002-CDS-Ecto-sp13_S_contig1865:6361..76271681462956.3630002-CDS-Ecto-sp13_S_contig1865:6361..7627Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1865 6362..7627 -
1681462956.3754601-CDS-Ecto-sp13_S_contig1865:7768..79871681462956.3754601-CDS-Ecto-sp13_S_contig1865:7768..7987Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1865 7769..7987 -
1681462956.3865337-CDS-Ecto-sp13_S_contig1865:8309..87681681462956.3865337-CDS-Ecto-sp13_S_contig1865:8309..8768Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1865 8310..8768 -
1681462956.3945062-CDS-Ecto-sp13_S_contig1865:9655..99761681462956.3945062-CDS-Ecto-sp13_S_contig1865:9655..9976Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1865 9656..9976 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462956.4026952-UTR-Ecto-sp13_S_contig1865:9976..103971681462956.4026952-UTR-Ecto-sp13_S_contig1865:9976..10397Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1865 9977..10397 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1865.5852.1prot_Ecto-sp13_S_contig1865.5852.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1865 6362..9976 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1865.5852.1

>prot_Ecto-sp13_S_contig1865.5852.1 ID=prot_Ecto-sp13_S_contig1865.5852.1|Name=mRNA_Ecto-sp13_S_contig1865.5852.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=755bp
MGKVTLEEYIDLFRGKAEQMGEFPDKIIINALTGTAKRHRTDKAQAIATV
LQNMLMDPNHPAKHKLPICFLVDSLVKNITDPFADLFENGLTRWFCSAYD
AVDEKSKKHLGRVVATWEVQSIFSADKRKEIQRYMLNAKPAAASLSSSSP
SPPPVTTTASTSAAVTVTTVPPPLPTVAPYQPPQPQAPPAAPVAAAAAPL
PPPLPPLPPASAVAAPVATPVAAPVAAPVAASVAAPVAAPVAPDIQAMVD
SRMKQLLDQQLLELGESSTMSLDDLWRTNAELASGFRLVAQAQVHEQLGL
PPPPPPPAIIIGPLQQQQQQPPPPHQTAPPLPQDFGRAVQVANEVAAGAR
VALNASLRGDLSGAQVQAAEAAGKAAMLACLLGGDAAAAVGGGFGGAGAG
VGVYLADLDPLDVRSLARGNPAAVRRLYGEGFPFWCKQDGTRFAKQAQLD
AHMDLLFRRKHARREQKGVAASREWYCTDEEWMTDFGRLAPPAGLGAGDG
EADGEVGGGGDGEEDGGADEDADPDGSKSCVPADERFSKCRICGDRFLMF
YDNDEEEWMYRNACYVTVKGGGEGEDGAGEDEEEEEAVGAPGEAAGGARQ
IIVHKLCLDVSGLRDKDEITWADLMPGTPRQKKRPAEGGDALDAAFFGEG
GDDAAEQEDEKDGSGETGDSSGTRVGDSGGGDGGGDANGGRPHGEGDGED
DGPPLKRAKAEGAAEEENRFGEVDAMGVVKAEEGGSGAGQGEVYDMDEEL
DFEA*
back to top

mRNA from alignment at Ecto-sp13_S_contig1865:6362..10397-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1865.5852.1 ID=mRNA_Ecto-sp13_S_contig1865.5852.1|Name=mRNA_Ecto-sp13_S_contig1865.5852.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4036bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1865:6362..10397- (Ectocarpus species13 EcNAP12_S_4_19m)
AAGACGAAGAAGAGGGTGTGACATCGATCGGAGCCTGTTCGACCGACGTT
GCCCCGCTGCCGCTGTTGTTGCTGCTGGGGTCGATCGGCTTGGCACACGC
CGGTGATCAGAGATAAGGAGCGATAGTCCTGCAGGAGTACAAATCCTGTC
GTAGCAAGCGCGGAGCACCTCGGGTGTACTCTTTGTCCTTTCGAGTTTTT
TTAGGCTGGTGTGTCTTGTCTTTGCCGAGAGCCTGCTTTCTCTGTCCGCG
TGGAAAGCGTGGAAAGAAAGTGGCGGTGTGGTTTTCTGTGGGGTCGTTGT
AAGCTTGTGCGGCACGGGTCATCTTGTGCGAGCAAGCGCTGACTGGTGTT
CGTCAAGACTCGCCGTAGGGCGAGAGATAGAGAGAGGAAAAAGACGATAA
AGAAAGAGAAAAACAAACACCATGGGCAAGGTTACTCTCGAAGAGTACAT
TGACCTCTTCCGAGGCAAGGCGGAGCAGATGGGCGAGTTCCCCGACAAGA
TCATAATCAATGCCCTCACTGGAACGGCCAAACGGCACCGCACTGACAAG
GCGCAGGCCATCGCCACGGTCCTCCAGAACATGCTCATGGACCCCAACCA
CCCCGCGAAACACAAACTGCCCATATGCTTCCTTGTGGACTCCCTCGTGA
AGAACATCACCGATCCTTTCGCCGACCTGTTCGAGAACGGCCTCACGCGC
TGGTTCTGCAGCGCCTACGACGCTGTTGACGAAAAGAGCAAGGTGCGAGA
ATGTTTGCAGTTGGTTGCTGCTGTAGCCGCTTTCCCCGTGCACGTACATG
TAGTTCACCAGCCGGCAGTTTGACGTTCTTCTGATTTGGAGCACATGGCG
CACAAGCGCTGTTTTGGCCAGCGCGTAAGTTCCCCTGCTGCCCGAGTGTT
TTATGCGCTCCTCGTTCGGGCGGGGGTACTGGAGTGTTCCTGTTCCTGCT
GCGTGCTGCGTATGGACAAGAATCCTGCTGCTGGAGACGCCATTTTTCTT
TGTCATCAGCGTGTCGTGATTGCTGTGTTGTTGGGCCCATTTGGCTGGAG
TAGGGAACTGCTTCGTTTCGGAAACGGTTAGTTTTCGCCGGTGAAGTGCT
CTCATGATCTCAGTCTCTCAGTACTCGGGCCGTCATGTGGGCATATTGCG
CGCAGATAAACTCGCGGCATTCATATGTACAGACCAGGCAGCAGCGACAG
CAGCACAACAGCAGAAGCAGCAGTGTTGCAAACCTACAGAATGTATGTAC
GACGCCGGTTAAAATATCGCCGGTGGCCCTACAGTCTAAAGCGCCGGTGA
AGTTGCTGGTCACAGACTGGATCACCAAATCATTCTGTAGTTTGAATAGC
GGCGATCCTTCTGAATAACGCCGGTCGTTTAGCCGGGCACATACCGGCGT
TCTTGAGGGCCCACTTTGGTAATCGTTATTCTCATGCCTTGTAATCCCGG
ATAAATAGCTTTCCCTTTGACTACCACGAGAAGCCTTCACTGTTTAACCG
TTTTTGCCAGGCTCGCTCTAGCCTTGCAGTGCAACACGCAGCAGCACCCA
CGCATCTGCATCTGACCCCAAGCTCACGCACATTCAAAGAGGCTTCCAAC
TCTCTCCCTTCGACGTTCGGTACACGCAGAAACACCTGGGCAGGGTAGTG
GCGACATGGGAGGTGCAGTCGATCTTCAGCGCCGACAAGCGCAAGGAGAT
CCAGAGGTACATGCTCAACGCCAAGCCCGCTGCCGCTTCGCTGTCTTCCT
CTTCTCCGTCCCCGCCTCCGGTGACCACCACGGCGTCGACCTCGGCGGCG
GTGACCGTCACGACCGTGCCCCCGCCGTTGCCGACGGTAGCGCCGTACCA
GCCGCCGCAGCCGCAGGCTCCGCCCGCCGCTCCCGTCGCTGCGGCCGCGG
CTCCTCTGCCGCCGCCCCTCCCACCGCTTCCCCCGGCATCGGCCGTGGCT
GCCCCGGTGGCTACGCCAGTGGCTGCACCAGTGGCTGCGCCAGTGGCTGC
GTCTGTGGCTGCACCAGTGGCTGCACCAGTAGCGCCAGACATCCAGGCGA
TGGTCGACTCTAGGATGAAGCAGCTGCTAGACCAGCAGGTGAGTTGCGAG
GTCGGATAAGATTTTTCGGCAAGGTGGACGGTGGCGTTGACAGTGGTGTC
AACTTGGCGGGAAGTTGTGCGGTCGGTCAAACACGTCTCACAATCAACAT
GTGCAGGGATGTGAGCTCGAATGTGTGGCACGTGAGGTACGCATAGTTCC
CCGATGTTTTTTGTCCCCTCCAAGCTATGATAGGCTGATGACATTACGCG
GACGAGTGGATGGCGTCCTTGCTGCTGTGACCGATATGCACGCCCTTAGA
TTACCGAAGTTTTTCCTGAAGCAACCCTTCTCCTCTACCCTTCCTGTCTC
CCCCATCTAGCTTCTTGAGCTCGGAGAGTCCAGCACCATGAGTCTGGACG
ACCTATGGCGAACAAACGCAGAGCTCGCGTCTGGCTTCCGGCTGGTGGCT
CAGGCACAAGTTCACGAGCAGCTCGGTCTCCCCCCACCGCCGCCCCCTCC
GGCCATCATCATCGGCCCCCTCCAGCAACAGCAGCAGCAGCCGCCGCCCC
CACATCAAACCGCCCCGCCGCTGCCCCAGGTGCCGCATCAACAGCAGCCC
CCTCAACAGCCACAGCCGCCGCAGCAGCAGCAGCAGCCACCGCGATCACA
ACCTCAACTGTCCATCCAGCTCCCCCTCGGGACCCCCCCCCCATGGGCGG
CGAAAGCCCCGCCGAGTCAGGACTTCGGGCGTGCCGTCCAGGTCGCGAAC
GAGGTCGCTGCGGGCGCGCGGGTGGCGCTCAACGCGAGCTTGCGAGGCGA
CCTCTCCGGGGCGCAGGTGCAGGCAGCCGAAGCGGCGGGAAAGGCGGCGA
TGCTAGCGTGCTTGTTGGGGGGCGACGCAGCAGCGGCGGTGGGGGGGGGC
TTCGGCGGCGCAGGCGCCGGCGTCGGGGTGTACCTCGCCGACCTTGACCC
GTTGGACGTGCGGTCTCTGGCCAGGGGAAACCCGGCGGCGGTGCGGCGGC
TGTACGGGGAAGGGTTCCCGTTCTGGTGCAAGCAGGACGGCACGAGGTTC
GCGAAGCAGGCGCAGCTGGACGCGCACATGGACCTCCTGTTCCGGCGGAA
GCACGCGAGAAGAGAGCAGAAAGGGGTGGCGGCCTCGCGCGAGTGGTACT
GCACCGACGAGGAGTGGATGACCGACTTCGGGCGCCTCGCGCCCCCGGCT
GGGTTGGGCGCCGGGGACGGGGAGGCGGACGGGGAGGTGGGGGGGGGCGG
CGACGGAGAGGAAGACGGCGGGGCGGACGAGGACGCCGACCCGGACGGGT
CCAAGTCGTGCGTCCCGGCGGACGAGAGGTTTTCCAAGTGCCGGATCTGC
GGGGACCGTTTCTTGATGTTCTACGATAACGACGAGGAGGAGTGGATGTA
CCGAAACGCCTGCTACGTCACGGTCAAGGGCGGCGGCGAAGGCGAGGATG
GCGCGGGAGAGGACGAGGAGGAAGAGGAGGCGGTGGGTGCGCCGGGGGAG
GCCGCGGGCGGGGCCAGGCAGATCATCGTGCACAAGCTGTGTCTTGACGT
TAGCGGGCTCCGGGACAAGGACGAGATCACGTGGGCAGACCTCATGCCCG
GGACGCCGCGGCAGAAGAAACGGCCGGCCGAGGGGGGTGACGCATTGGAT
GCGGCATTTTTCGGGGAGGGCGGCGATGACGCGGCGGAGCAGGAAGACGA
GAAGGACGGCTCGGGTGAGACAGGCGACAGCAGTGGCACCCGCGTTGGCG
ATAGTGGCGGTGGAGACGGTGGGGGAGATGCAAACGGCGGGCGGCCGCAC
GGTGAGGGTGACGGGGAGGATGACGGGCCACCGCTCAAACGAGCCAAAGC
GGAGGGGGCGGCAGAGGAAGAGAACAGGTTCGGAGAGGTCGACGCGATGG
GTGTTGTGAAGGCGGAGGAAGGGGGTTCGGGCGCAGGGCAAGGCGAAGTT
TACGACATGGACGAAGAGCTGGATTTCGAAGCGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1865:6362..10397-

>mRNA_Ecto-sp13_S_contig1865.5852.1 ID=mRNA_Ecto-sp13_S_contig1865.5852.1|Name=mRNA_Ecto-sp13_S_contig1865.5852.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2265bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1865:6362..10397- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCAAGGTTACTCTCGAAGAGTACATTGACCTCTTCCGAGGCAAGGC
GGAGCAGATGGGCGAGTTCCCCGACAAGATCATAATCAATGCCCTCACTG
GAACGGCCAAACGGCACCGCACTGACAAGGCGCAGGCCATCGCCACGGTC
CTCCAGAACATGCTCATGGACCCCAACCACCCCGCGAAACACAAACTGCC
CATATGCTTCCTTGTGGACTCCCTCGTGAAGAACATCACCGATCCTTTCG
CCGACCTGTTCGAGAACGGCCTCACGCGCTGGTTCTGCAGCGCCTACGAC
GCTGTTGACGAAAAGAGCAAGAAACACCTGGGCAGGGTAGTGGCGACATG
GGAGGTGCAGTCGATCTTCAGCGCCGACAAGCGCAAGGAGATCCAGAGGT
ACATGCTCAACGCCAAGCCCGCTGCCGCTTCGCTGTCTTCCTCTTCTCCG
TCCCCGCCTCCGGTGACCACCACGGCGTCGACCTCGGCGGCGGTGACCGT
CACGACCGTGCCCCCGCCGTTGCCGACGGTAGCGCCGTACCAGCCGCCGC
AGCCGCAGGCTCCGCCCGCCGCTCCCGTCGCTGCGGCCGCGGCTCCTCTG
CCGCCGCCCCTCCCACCGCTTCCCCCGGCATCGGCCGTGGCTGCCCCGGT
GGCTACGCCAGTGGCTGCACCAGTGGCTGCGCCAGTGGCTGCGTCTGTGG
CTGCACCAGTGGCTGCACCAGTAGCGCCAGACATCCAGGCGATGGTCGAC
TCTAGGATGAAGCAGCTGCTAGACCAGCAGCTTCTTGAGCTCGGAGAGTC
CAGCACCATGAGTCTGGACGACCTATGGCGAACAAACGCAGAGCTCGCGT
CTGGCTTCCGGCTGGTGGCTCAGGCACAAGTTCACGAGCAGCTCGGTCTC
CCCCCACCGCCGCCCCCTCCGGCCATCATCATCGGCCCCCTCCAGCAACA
GCAGCAGCAGCCGCCGCCCCCACATCAAACCGCCCCGCCGCTGCCCCAGG
ACTTCGGGCGTGCCGTCCAGGTCGCGAACGAGGTCGCTGCGGGCGCGCGG
GTGGCGCTCAACGCGAGCTTGCGAGGCGACCTCTCCGGGGCGCAGGTGCA
GGCAGCCGAAGCGGCGGGAAAGGCGGCGATGCTAGCGTGCTTGTTGGGGG
GCGACGCAGCAGCGGCGGTGGGGGGGGGCTTCGGCGGCGCAGGCGCCGGC
GTCGGGGTGTACCTCGCCGACCTTGACCCGTTGGACGTGCGGTCTCTGGC
CAGGGGAAACCCGGCGGCGGTGCGGCGGCTGTACGGGGAAGGGTTCCCGT
TCTGGTGCAAGCAGGACGGCACGAGGTTCGCGAAGCAGGCGCAGCTGGAC
GCGCACATGGACCTCCTGTTCCGGCGGAAGCACGCGAGAAGAGAGCAGAA
AGGGGTGGCGGCCTCGCGCGAGTGGTACTGCACCGACGAGGAGTGGATGA
CCGACTTCGGGCGCCTCGCGCCCCCGGCTGGGTTGGGCGCCGGGGACGGG
GAGGCGGACGGGGAGGTGGGGGGGGGCGGCGACGGAGAGGAAGACGGCGG
GGCGGACGAGGACGCCGACCCGGACGGGTCCAAGTCGTGCGTCCCGGCGG
ACGAGAGGTTTTCCAAGTGCCGGATCTGCGGGGACCGTTTCTTGATGTTC
TACGATAACGACGAGGAGGAGTGGATGTACCGAAACGCCTGCTACGTCAC
GGTCAAGGGCGGCGGCGAAGGCGAGGATGGCGCGGGAGAGGACGAGGAGG
AAGAGGAGGCGGTGGGTGCGCCGGGGGAGGCCGCGGGCGGGGCCAGGCAG
ATCATCGTGCACAAGCTGTGTCTTGACGTTAGCGGGCTCCGGGACAAGGA
CGAGATCACGTGGGCAGACCTCATGCCCGGGACGCCGCGGCAGAAGAAAC
GGCCGGCCGAGGGGGGTGACGCATTGGATGCGGCATTTTTCGGGGAGGGC
GGCGATGACGCGGCGGAGCAGGAAGACGAGAAGGACGGCTCGGGTGAGAC
AGGCGACAGCAGTGGCACCCGCGTTGGCGATAGTGGCGGTGGAGACGGTG
GGGGAGATGCAAACGGCGGGCGGCCGCACGGTGAGGGTGACGGGGAGGAT
GACGGGCCACCGCTCAAACGAGCCAAAGCGGAGGGGGCGGCAGAGGAAGA
GAACAGGTTCGGAGAGGTCGACGCGATGGGTGTTGTGAAGGCGGAGGAAG
GGGGTTCGGGCGCAGGGCAAGGCGAAGTTTACGACATGGACGAAGAGCTG
GATTTCGAAGCGTGA
back to top