mRNA_Ecto-sp13_S_contig18639.5845.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18639.5845.1
Unique NamemRNA_Ecto-sp13_S_contig18639.5845.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18639.5845.1 vs. uniprot
Match: A0A6H5K116_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K116_9PHAE)

HSP 1 Score: 250 bits (638), Expect = 1.260e-76
Identity = 168/252 (66.67%), Postives = 170/252 (67.46%), Query Frame = 1 
Query:    1 RDLHRPPPLPRGGELGESLRLLSARHRVRPLPLHSSQQHGASGSREMKRNKSSAAVCAASSPASCNHAGPQRHLAGTAWARISRGLSAAGSGGGPPAARGSADGTPPRGAEKNAGDSAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGASGVGSADGGSXXXXAGGVVGDLPNQVSELYAEMERNLMSRMHAQDKNRFRAVGLSSLLILIWVLSMFGTEIRRYFASQTAEVARETLKVEALQV 756
            RDLHRPPPLPRGG LGES RLLSA++RVRPLPL SSQQHGA GS EMKRNK SAA  A  SP SCN   PQRHLAGTAW R SRGLS AG G     A  SADG PPRG          XXXXX                               A            XXXX  GVVGDLP QVSELYAEMERNLMSRMHAQDKNRFRAVGLSSLLILIWVLSMFGTEIRRYFASQTAEVARETLKVEALQV
Sbjct:   45 RDLHRPPPLPRGGGLGESSRLLSAQYRVRPLPLRSSQQHGAFGSEEMKRNKISAAAAAGLSPTSCN---PQRHLAGTAWGRTSRGLSDAGRG--DAEAGKSADGAPPRGXXXXXXXXXXXXXXXTSGMIKERGWAAAAATGGDSAARRAGNGGRGAXXXXXXXXXXXXXXXXXXGVVGDLPYQVSELYAEMERNLMSRMHAQDKNRFRAVGLSSLLILIWVLSMFGTEIRRYFASQTAEVARETLKVEALQV 291
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BLAST of mRNA_Ecto-sp13_S_contig18639.5845.1 vs. uniprot
Match: A0A835YV69_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV69_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 8.200e-12
Identity = 34/66 (51.52%), Postives = 47/66 (71.21%), Query Frame = 1 
Query:  559 LYAEMERNLMSRMHAQDKNRFRAVGLSSLLILIWVLSMFGTEIRRYFASQTAEVARETLKVEALQV 756
            +Y++ME  LM+RM   +K RFR   + ++L +IWV + FG EIR +   QTAEVARETLK EA+Q+
Sbjct:    1 MYSDMEAKLMARMRTHNKGRFRTAAIVTVLTVIWVFNTFGKEIRVWMGGQTAEVARETLKHEAIQI 66
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BLAST of mRNA_Ecto-sp13_S_contig18639.5845.1 vs. uniprot
Match: A0A7R9YAX6_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YAX6_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 6.130e-8
Identity = 31/73 (42.47%), Postives = 46/73 (63.01%), Query Frame = 1 
Query:  535 DLPNQVSELYAEMERNLMSRMHAQDKNRFRAVGLSSLLILIWVLSMFGTEIRRYFASQTAEVARETLKVEALQ 753
            ++  +V + Y E+E  LM    A +  + R    ++ L+ +WV S+FG  IRR+F+ QTAEVARETL+ E LQ
Sbjct:   43 EVSQRVVDNYKEIEARLMRTTRASNVEQIRLALTAAALVTVWVFSVFGRHIRRFFSKQTAEVARETLENEELQ 115
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BLAST of mRNA_Ecto-sp13_S_contig18639.5845.1 vs. uniprot
Match: A0A7S3UXV6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UXV6_HETAK)

HSP 1 Score: 62.4 bits (150), Expect = 1.380e-7
Identity = 29/61 (47.54%), Postives = 41/61 (67.21%), Query Frame = 1 
Query:  574 ERNLMSRMHAQDKNRFRAVGLSSLLILIWVLSMFGTEIRRYFASQTAEVARETLKVEALQV 756
            E  LM R+H  ++NRFR   L ++L   W+ + FG EI  +F  QTAEVA+ETL+ E+LQ+
Sbjct:  113 EEYLMKRIHIGNQNRFRTAVLGTILTCCWLTATFGQEIYSFFTKQTAEVAKETLRQESLQI 173
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18639.5845.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5K116_9PHAE1.260e-7666.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YV69_9STRA8.200e-1251.52Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7R9YAX6_9STRA6.130e-842.47Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi... [more]
A0A7S3UXV6_HETAK1.380e-747.54Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18639contigEcto-sp13_S_contig18639:2..3446 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size771
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-11_003350.1
Cds size771
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462955.7360795-CDS-Ecto-sp13_S_contig18639:1..331681462955.7360795-CDS-Ecto-sp13_S_contig18639:1..33Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18639 2..33 +
1681462955.748059-CDS-Ecto-sp13_S_contig18639:1274..15421681462955.748059-CDS-Ecto-sp13_S_contig18639:1274..1542Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18639 1275..1542 +
1681462955.7628188-CDS-Ecto-sp13_S_contig18639:1683..19511681462955.7628188-CDS-Ecto-sp13_S_contig18639:1683..1951Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18639 1684..1951 +
1681462955.7775998-CDS-Ecto-sp13_S_contig18639:2562..26481681462955.7775998-CDS-Ecto-sp13_S_contig18639:2562..2648Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18639 2563..2648 +
1681462955.787784-CDS-Ecto-sp13_S_contig18639:3329..34461681462955.787784-CDS-Ecto-sp13_S_contig18639:3329..3446Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18639 3330..3446 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18639.5845.1prot_Ecto-sp13_S_contig18639.5845.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18639 2..3446 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18639.5845.1

>prot_Ecto-sp13_S_contig18639.5845.1 ID=prot_Ecto-sp13_S_contig18639.5845.1|Name=mRNA_Ecto-sp13_S_contig18639.5845.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=257bp
RDLHRPPPLPRGGELGESLRLLSARHRVRPLPLHSSQQHGASGSREMKRN
KSSAAVCAASSPASCNHAGPQRHLAGTAWARISRGLSAAGSGGGPPAARG
SADGTPPRGAEKNAGDSAVGSGGGEASGMKKEGGWAAAAATGGGSAVRRA
GNGGGAGASGVGSADGGSAGSGAGGVVGDLPNQVSELYAEMERNLMSRMH
AQDKNRFRAVGLSSLLILIWVLSMFGTEIRRYFASQTAEVARETLKVEAL
QVGWAC*
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mRNA from alignment at Ecto-sp13_S_contig18639:2..3446+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18639.5845.1 ID=mRNA_Ecto-sp13_S_contig18639.5845.1|Name=mRNA_Ecto-sp13_S_contig18639.5845.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3445bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18639:2..3446+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGAGATCTACATCGTCCGCCGCCGTTGCCCAGGTGGGTTGGGTGAACATC
CAACATTGGCTGTGTATCTGTAGAATACCCGGGGGGAGTGTATACGTTTA
TCGAAAGGAACAATCCCAATGGTGCAATTGTCTGCCATTCAACGAAGCTT
TTTCCCAGGCACGCCCAATAATCTGTATCGATCTCCGTAATTCTTGATGC
ATAGCTGTGTTCGCTCTGCTGCTGTGTATCAGGTCCCTTCGTTACGACGT
GCTCTGGGGAAGGCAGCAGGTGCTAAACTAATGCAGTGCTGCGGGTTGTT
GTGGTTTTGTTGGGGCTCTGATGGCCCTAGCCTCTTCGCCACCCCCTCCT
TCCCTTTCTCTGTGGCGATACTCCTGAAATCAGCCTGTTGGCGTTGTTAC
CCAAAAGCGCGGATTTGTACGCCCAGTAGCACCACAAGCGTTGATCATGT
TTCTGCTGCCCCCACCAGCTTCTCACAATCGTGAGCTTGGGCATCGTGCG
ACACTGCTCTGAAGCAATCCTATCAACATATTTGTGCGCTGTATGGGTCA
TCCAATGCCATGTTAAAACCAACGGCGGAGACGTGAGCGCAGAAAGCAAC
GTTCGGAAAGGACCTGTGCCAGTTACCGTTACAGAAATCGGGGAATGCTG
AAATACTATCGAACCCACCCCCAAAAAACGGTTGAAGACGTGAACACGAA
AACGTGTTGCCAAGCTTGCCCCTTAAGGTGCACGTGCAGGGGCCTTTAAC
TTTTCGCAGCGGTGGTCCGCATACCACCCGTAGGTGATTGGTCACTGGTA
CCATTGATGTTTTTCAGAGAGAACCACCGTGTGCCACTGCTGTGTTATGA
TGTCATACGCCACATCGATTTCGTGCCGCGTGTTCGCTTGTGTACACGCT
TGGTCGCCCCCCCCACCCCCTCCCTTACCGGGCGGATGTGTGCGCCCGCA
GGTGGGGAGGCGTGCCTAGAAAGGTGTTCTATATCTCTCCCGAAAGCAAC
CACGACCCAGCGTCTGACTGTCGACTTCCACGTTGTCGAGATCGCGCACC
GCACGTCATCGGGACTCTTCTACATGTTGTTCCATGCCAAACGCACAAAC
AGCAGTGTCATCCAATTCATGGACAGGTTTTAAAAATAAACTTTTTTTGC
GGTCGATTTCTCTCCTCCCGAACGAAGTAGCGCCATTGCGCATGCTTTTC
TTTCCGGGCTTCCAGCCTACGCACGCCCTGACGCTCTGACGTCGATTCCT
CGTCCCTCGCACGTTAGCTGTAGGGGTGGTGAGCTCGGCGAGAGCTTGCG
TCTCCTGTCTGCACGGCACCGCGTCCGGCCTTTACCGCTCCATTCATCCC
AGCAGCACGGCGCATCTGGCTCCAGGGAAATGAAACGGAACAAAAGTTCC
GCCGCAGTTTGTGCGGCATCATCTCCTGCCAGCTGCAACCATGCAGGGCC
GCAACGACACCTAGCCGGTACCGCGTGGGCAAGAATCAGCAGAGGCCTCT
CCGCTGCGGGAAGCGGCGGCGGCCCCCCTGCTGCTCGGGGCGTTGCGGCG
ACGGTAAGCGTGGACACCGCCGCCAGGACGCGCGTGGACCGCCTGCACAC
GACGGCGGCGCGGCGAGGCAAGGATAACGGGACGTCATCGTCGCCGCCTG
GTAGTCCAGGAGCGGGTGCGGGCGCCGGAAAGTCTGCCGACGGAACACCA
CCAAGAGGGGCAGAGAAAAACGCGGGGGACTCCGCAGTAGGGAGCGGGGG
GGGTGAGGCCTCGGGAATGAAAAAAGAGGGAGGGTGGGCGGCCGCGGCGG
CGACAGGCGGGGGCTCCGCGGTAAGGCGGGCTGGCAACGGAGGAGGGGCC
GGGGCGTCGGGCGTGGGATCCGCCGACGGGGGCTCCGCAGGATCTGGAGC
AGGAGGGGTTGTCGGGGATCTGCCGAATCAGGTTTCAGAGCTCTACGCCG
GTGCGTATTGTTGATGGATGGACGATTGGACACCGTGTGCACGCCCGCGC
CCATTGTCGCCTTTGTAATTGCCTCGGGCGTTCGGGGGCTTTCTTACTGT
ATGCTGCAAAGTGTACGGGCTCTGTGCCGGCGTGAGGTGGTTGCGAGCAG
TAGCGCCAACGTTTTGTGCGTTACATCATTGGGTTGGCTCTTGCACTCCT
CCTCTGTTGTCCGCTGATCGCGATTGTTGCCCTGAGTCATTTTACTCGCG
AACAATGTGCTGTACGTGGTTGCTGCTGCTGCACATTGCTTGTGTCACGC
GCTAGCACAGAACCCCGTGCCCTGGCCACCTCTCCATGCCAGTGCAATGC
AAATAGAGCATCTAGTTTGTTTTCACGCGAGCGTAATGTGCTGGGAGTGT
ACCCACCCCTCATTGCTACGGACTGGTTTCGCCCTGGTTTCCATCGACGG
TATTTTGATGCTTTCGTTCCCTCCAGTCCTCACCCCGACGCTTCGCTTTG
ATGCTTGAGTCAAACCGGCCCCTCACGCCCTCCCTCTCTGTCCGCCTGCT
CGATGCTACGCAATCCGATGCGGCGGAACTCTTGCTCGGCGTACTCAACG
TGACGTCACAGAAATGGAGCGTAATTTGATGTCCAGGATGCACGCGCAGG
ACAAGAACCGATTCCGTGCTGTGGGCCTCTCCAGCTTGCTTATCTTGGTG
AGAGGCGATGGTCAAGCAGGGGGGGTAGGCTGCCCGCCACGCCCTGCTTG
AAATCCATGAGTGGGAACGAGGCCAGCGTCGTCACCTTTCGTTGGTTGGG
ACCGGAAGTTGTCGTACTCACAATGTGTTGTAGAAATGACGGACTTGAAC
TGGTGTATGCGAGTGTTCCAGTGGTGCACGGCTTGAATGTAGCACGCACG
TGCGTGGGGTGAAGCAACGTGGATTGAACAGAGATCTGTTTCTACAGCAG
CACGATTTATTCGAGGATGGAATGAACCAAACGAAGTCGCTTTGAGCATG
TCGATGGAAGGTACTTTTGTGGGATGTTCGTGCGTTTGGTTACGTGATAA
ATGTGTGCGGGATTCTGGTCCCGTGTTCACCGCGGAGTAGTGCGAGGTTG
GTGTGGCGAGTGTCACGGGTTTGTGTCAAACTAGCTAGCAGAGCGTCGAC
ATTGGGAAATTGGCTGTCTGGTACTGCTACTGGGGTATTGTCCCACTTCT
TCCGCCTCTTGCGTTGGTGGAGAACACTCAAATAATCTCCCCCCCCGGTT
TCTTTCACCACCAAACACCACCTAGTCAGACTGCGTGTGGCGCCGACGCC
TGACACGGCGCAACATCTTTCGACGCATGATGCCCCCCCCCAATTGTCGT
GGCCCTCGCATTGTTTTGATCTTGGAAGATCTGGGTACTGAGCATGTTCG
GGACAGAGATCAGGCGGTATTTCGCGAGCCAGACGGCGGAGGTAGCAAGA
GAAACCCTCAAAGTCGAAGCACTGCAGGTGGGATGGGCTTGTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18639:2..3446+

>mRNA_Ecto-sp13_S_contig18639.5845.1 ID=mRNA_Ecto-sp13_S_contig18639.5845.1|Name=mRNA_Ecto-sp13_S_contig18639.5845.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=771bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18639:2..3446+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGAGATCTACATCGTCCGCCGCCGTTGCCCAGGGGTGGTGAGCTCGGCGA
GAGCTTGCGTCTCCTGTCTGCACGGCACCGCGTCCGGCCTTTACCGCTCC
ATTCATCCCAGCAGCACGGCGCATCTGGCTCCAGGGAAATGAAACGGAAC
AAAAGTTCCGCCGCAGTTTGTGCGGCATCATCTCCTGCCAGCTGCAACCA
TGCAGGGCCGCAACGACACCTAGCCGGTACCGCGTGGGCAAGAATCAGCA
GAGGCCTCTCCGCTGCGGGAAGCGGCGGCGGCCCCCCTGCTGCTCGGGGC
TCTGCCGACGGAACACCACCAAGAGGGGCAGAGAAAAACGCGGGGGACTC
CGCAGTAGGGAGCGGGGGGGGTGAGGCCTCGGGAATGAAAAAAGAGGGAG
GGTGGGCGGCCGCGGCGGCGACAGGCGGGGGCTCCGCGGTAAGGCGGGCT
GGCAACGGAGGAGGGGCCGGGGCGTCGGGCGTGGGATCCGCCGACGGGGG
CTCCGCAGGATCTGGAGCAGGAGGGGTTGTCGGGGATCTGCCGAATCAGG
TTTCAGAGCTCTACGCCGAAATGGAGCGTAATTTGATGTCCAGGATGCAC
GCGCAGGACAAGAACCGATTCCGTGCTGTGGGCCTCTCCAGCTTGCTTAT
CTTGATCTGGGTACTGAGCATGTTCGGGACAGAGATCAGGCGGTATTTCG
CGAGCCAGACGGCGGAGGTAGCAAGAGAAACCCTCAAAGTCGAAGCACTG
CAGGTGGGATGGGCTTGTTGA
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