prot_Ecto-sp13_S_contig18639.5845.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig18639.5845.1
Unique Nameprot_Ecto-sp13_S_contig18639.5845.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length257
Homology
BLAST of mRNA_Ecto-sp13_S_contig18639.5845.1 vs. uniprot
Match: A0A6H5K116_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K116_9PHAE)

HSP 1 Score: 250 bits (638), Expect = 1.260e-76
Identity = 168/252 (66.67%), Postives = 170/252 (67.46%), Query Frame = 0
Query:    1 RDLHRPPPLPRGGELGESLRLLSARHRVRPLPLHSSQQHGASGSREMKRNKSSAAVCAASSPASCNHAGPQRHLAGTAWARISRGLSAAGSGGGPPAARGSADGTPPRGAEKNAGDSAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGASGVGSADGGSXXXXAGGVVGDLPNQVSELYAEMERNLMSRMHAQDKNRFRAVGLSSLLILIWVLSMFGTEIRRYFASQTAEVARETLKVEALQV 252
            RDLHRPPPLPRGG LGES RLLSA++RVRPLPL SSQQHGA GS EMKRNK SAA  A  SP SCN   PQRHLAGTAW R SRGLS AG G     A  SADG PPRG          XXXXX                               A            XXXX  GVVGDLP QVSELYAEMERNLMSRMHAQDKNRFRAVGLSSLLILIWVLSMFGTEIRRYFASQTAEVARETLKVEALQV
Sbjct:   45 RDLHRPPPLPRGGGLGESSRLLSAQYRVRPLPLRSSQQHGAFGSEEMKRNKISAAAAAGLSPTSCN---PQRHLAGTAWGRTSRGLSDAGRG--DAEAGKSADGAPPRGXXXXXXXXXXXXXXXTSGMIKERGWAAAAATGGDSAARRAGNGGRGAXXXXXXXXXXXXXXXXXXGVVGDLPYQVSELYAEMERNLMSRMHAQDKNRFRAVGLSSLLILIWVLSMFGTEIRRYFASQTAEVARETLKVEALQV 291          
BLAST of mRNA_Ecto-sp13_S_contig18639.5845.1 vs. uniprot
Match: A0A835YV69_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV69_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 8.200e-12
Identity = 34/66 (51.52%), Postives = 47/66 (71.21%), Query Frame = 0
Query:  187 LYAEMERNLMSRMHAQDKNRFRAVGLSSLLILIWVLSMFGTEIRRYFASQTAEVARETLKVEALQV 252
            +Y++ME  LM+RM   +K RFR   + ++L +IWV + FG EIR +   QTAEVARETLK EA+Q+
Sbjct:    1 MYSDMEAKLMARMRTHNKGRFRTAAIVTVLTVIWVFNTFGKEIRVWMGGQTAEVARETLKHEAIQI 66          
BLAST of mRNA_Ecto-sp13_S_contig18639.5845.1 vs. uniprot
Match: A0A7R9YAX6_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YAX6_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 6.130e-8
Identity = 31/73 (42.47%), Postives = 46/73 (63.01%), Query Frame = 0
Query:  179 DLPNQVSELYAEMERNLMSRMHAQDKNRFRAVGLSSLLILIWVLSMFGTEIRRYFASQTAEVARETLKVEALQ 251
            ++  +V + Y E+E  LM    A +  + R    ++ L+ +WV S+FG  IRR+F+ QTAEVARETL+ E LQ
Sbjct:   43 EVSQRVVDNYKEIEARLMRTTRASNVEQIRLALTAAALVTVWVFSVFGRHIRRFFSKQTAEVARETLENEELQ 115          
BLAST of mRNA_Ecto-sp13_S_contig18639.5845.1 vs. uniprot
Match: A0A7S3UXV6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UXV6_HETAK)

HSP 1 Score: 62.4 bits (150), Expect = 1.380e-7
Identity = 29/61 (47.54%), Postives = 41/61 (67.21%), Query Frame = 0
Query:  192 ERNLMSRMHAQDKNRFRAVGLSSLLILIWVLSMFGTEIRRYFASQTAEVARETLKVEALQV 252
            E  LM R+H  ++NRFR   L ++L   W+ + FG EI  +F  QTAEVA+ETL+ E+LQ+
Sbjct:  113 EEYLMKRIHIGNQNRFRTAVLGTILTCCWLTATFGQEIYSFFTKQTAEVAKETLRQESLQI 173          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18639.5845.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5K116_9PHAE1.260e-7666.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YV69_9STRA8.200e-1251.52Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7R9YAX6_9STRA6.130e-842.47Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi... [more]
A0A7S3UXV6_HETAK1.380e-747.54Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..206
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 227..256
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 207..226

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18639contigEcto-sp13_S_contig18639:2..3446 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18639.5845.1mRNA_Ecto-sp13_S_contig18639.5845.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig18639 2..3446 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig18639.5845.1 ID=prot_Ecto-sp13_S_contig18639.5845.1|Name=mRNA_Ecto-sp13_S_contig18639.5845.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=257bp
RDLHRPPPLPRGGELGESLRLLSARHRVRPLPLHSSQQHGASGSREMKRN
KSSAAVCAASSPASCNHAGPQRHLAGTAWARISRGLSAAGSGGGPPAARG
SADGTPPRGAEKNAGDSAVGSGGGEASGMKKEGGWAAAAATGGGSAVRRA
GNGGGAGASGVGSADGGSAGSGAGGVVGDLPNQVSELYAEMERNLMSRMH
AQDKNRFRAVGLSSLLILIWVLSMFGTEIRRYFASQTAEVARETLKVEAL
QVGWAC*
back to top