mRNA_Ecto-sp13_S_contig18614.5835.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18614.5835.1
Unique NamemRNA_Ecto-sp13_S_contig18614.5835.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig18614.5835.1 vs. uniprot
Match: A0A6H5KQ17_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ17_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 1.150e-45
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1
Query:    1 WAKIAEVMPGRTAKQCRERYNNHVDPGIKKDKIWTAEEDALVMQLHAEHHNQFAKIARNIPGRCYDDVKNRRV 219
            WAKIAEVMPGRTAKQCRERYNNHVDPGIKKDKIWTAEEDALVMQLHAEHHNQFAKIARNIPGRCYDDVKNRRV
Sbjct:  392 WAKIAEVMPGRTAKQCRERYNNHVDPGIKKDKIWTAEEDALVMQLHAEHHNQFAKIARNIPGRCYDDVKNRRV 464          
BLAST of mRNA_Ecto-sp13_S_contig18614.5835.1 vs. uniprot
Match: D8LH85_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH85_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 2.500e-43
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1
Query:    1 WAKIAEVMPGRTAKQCRERYNNHVDPGIKKDKIWTAEEDALVMQLHAEHHNQFAKIARNIPGRCYDDVKNR 213
            WAKIAEVMPGRTAKQCRERYNNHVDPGIKKDKIWTAEEDALVMQLHAEHHNQFAKIARNIPGRCYDDVKNR
Sbjct:  521 WAKIAEVMPGRTAKQCRERYNNHVDPGIKKDKIWTAEEDALVMQLHAEHHNQFAKIARNIPGRCYDDVKNR 591          
BLAST of mRNA_Ecto-sp13_S_contig18614.5835.1 vs. uniprot
Match: A0A835YSH7_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSH7_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 5.140e-23
Identity = 43/71 (60.56%), Postives = 53/71 (74.65%), Query Frame = 1
Query:    1 WAKIAEVMPGRTAKQCRERYNNHVDPGIKKDKIWTAEEDALVMQLHAEHHNQFAKIARNIPGRCYDDVKNR 213
            WA+I   MPGR  KQCRERY NH+DP +KK   WT EEDAL+ +LH + +N +A IAR +PGRC +DVKNR
Sbjct:   78 WAQICMHMPGRVGKQCRERYLNHLDPSLKKTP-WTPEEDALLTELHTKMNNSWADIARQMPGRCDNDVKNR 147          
BLAST of mRNA_Ecto-sp13_S_contig18614.5835.1 vs. uniprot
Match: B7G9A5_PHATC (Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G9A5_PHATC)

HSP 1 Score: 92.4 bits (228), Expect = 1.050e-22
Identity = 40/77 (51.95%), Postives = 57/77 (74.03%), Query Frame = 1
Query:    1 WAKIAEVMPGRTAKQCRERYNNHVDPGIKKDKIWTAEEDALVMQLHAEHHNQFAKIARNIPGRCYDDVKNRRVSPVQ 231
            WAKIA  +PGR  KQCRER+ NH+DP +KK + WT +E+A+++ +H  H N++A IA+N+PGR  +DVKN   S +Q
Sbjct:   23 WAKIAAFLPGRQGKQCRERFVNHLDPELKKGE-WTDDEEAILIAMHEHHGNRWANIAKNLPGRSDNDVKNHWYSTIQ 98          
BLAST of mRNA_Ecto-sp13_S_contig18614.5835.1 vs. uniprot
Match: A0A8J8NGV7_HALGN (Uncharacterized protein n=1 Tax=Halteria grandinella TaxID=5974 RepID=A0A8J8NGV7_HALGN)

HSP 1 Score: 91.7 bits (226), Expect = 7.860e-20
Identity = 36/71 (50.70%), Postives = 57/71 (80.28%), Query Frame = 1
Query:    1 WAKIAEVMPGRTAKQCRERYNNHVDPGIKKDKIWTAEEDALVMQLHAEHHNQFAKIARNIPGRCYDDVKNR 213
            W+ IA  +PGR  KQCRER++NH+DP I+K+K W+AEED +++++H EH N++ +IA+++PGR  + +KNR
Sbjct:  202 WSTIAAALPGRIGKQCRERWHNHLDPNIRKEK-WSAEEDRIILEMHQEHGNKWCEIAKSLPGRTDNAIKNR 271          
BLAST of mRNA_Ecto-sp13_S_contig18614.5835.1 vs. uniprot
Match: A0A6H5JMK3_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMK3_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 1.090e-19
Identity = 39/71 (54.93%), Postives = 54/71 (76.06%), Query Frame = 1
Query:    1 WAKIAEVMPGRTAKQCRERYNNHVDPGIKKDKIWTAEEDALVMQLHAEHHNQFAKIARNIPGRCYDDVKNR 213
            W+ +A+ +PGR AKQCRERY NH+DP ++KD  WT +E+AL+M+L     NQ+A+I R + GR Y+DVKNR
Sbjct: 1056 WSDLAKHIPGRIAKQCRERYLNHLDPSLRKDMPWTEDEEALLMRLCFAKQNQWAEICRQLHGRSYNDVKNR 1126          
BLAST of mRNA_Ecto-sp13_S_contig18614.5835.1 vs. uniprot
Match: A0A7S3WDS7_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3WDS7_EMIHU)

HSP 1 Score: 87.8 bits (216), Expect = 2.720e-19
Identity = 39/71 (54.93%), Postives = 57/71 (80.28%), Query Frame = 1
Query:    1 WAKIAEVMPGRTAKQCRERYNNHVDPGIKKDKIWTAEEDALVMQLHAEHHNQFAKIARNIPGRCYDDVKNR 213
            WA+IA V+PGRT KQCRER+ N++DP +KK   WTA+EDA++++LHA    ++A+IA+++PGR  + VKNR
Sbjct:   62 WARIASVLPGRTGKQCRERWCNNLDPMLKKGG-WTADEDAVILRLHASLGTRWAEIAKSLPGRSDNSVKNR 131          
BLAST of mRNA_Ecto-sp13_S_contig18614.5835.1 vs. uniprot
Match: A0A7S3APN2_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3APN2_9EUKA)

HSP 1 Score: 87.8 bits (216), Expect = 2.990e-19
Identity = 37/71 (52.11%), Postives = 57/71 (80.28%), Query Frame = 1
Query:    1 WAKIAEVMPGRTAKQCRERYNNHVDPGIKKDKIWTAEEDALVMQLHAEHHNQFAKIARNIPGRCYDDVKNR 213
            WA+IA ++PGRT KQCRER+ N++DP +KK   WTAEED +++++HA+   ++A+IA+++PGR  + VKNR
Sbjct:   48 WARIASMLPGRTGKQCRERWCNNLDPSLKKG-AWTAEEDQIILKMHAKLGTRWAEIAKSLPGRSDNSVKNR 117          
BLAST of mRNA_Ecto-sp13_S_contig18614.5835.1 vs. uniprot
Match: UPI0005C88B33 (transcription factor MYB98-like n=1 Tax=Fragaria vesca subsp. vesca TaxID=101020 RepID=UPI0005C88B33)

HSP 1 Score: 87.8 bits (216), Expect = 3.030e-19
Identity = 37/70 (52.86%), Postives = 55/70 (78.57%), Query Frame = 1
Query:    1 WAKIAEVMPGRTAKQCRERYNNHVDPGIKKDKIWTAEEDALVMQLHAEHHNQFAKIARNIPGRCYDDVKN 210
            W+ IA+++PGR  KQCRER++NH+ P IKKD IW+ EED +++Q HAE  N++A+IA+ +PGR  + +KN
Sbjct:   18 WSHIAQMLPGRIGKQCRERWHNHLRPDIKKD-IWSEEEDKILIQAHAEIGNKWAEIAKRLPGRTENSIKN 86          
BLAST of mRNA_Ecto-sp13_S_contig18614.5835.1 vs. uniprot
Match: D7G0Z5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Z5_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 3.790e-19
Identity = 40/71 (56.34%), Postives = 54/71 (76.06%), Query Frame = 1
Query:    1 WAKIAEVMPGRTAKQCRERYNNHVDPGIKKDKIWTAEEDALVMQLHAEHHNQFAKIARNIPGRCYDDVKNR 213
            W++I++ MPGR  KQCRERY NH+DP ++    WT EE+ L++ LHA  +NQ+A+IAR IPGR  +DVKNR
Sbjct:  649 WSQISDHMPGRVGKQCRERYLNHLDPSLRHGP-WTEEEERLLLSLHARLNNQWAEIARQIPGRSDNDVKNR 718          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18614.5835.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KQ17_9PHAE1.150e-45100.00MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LH85_ECTSI2.500e-43100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YSH7_9STRA5.140e-2360.56Homeodomain-like protein (Fragment) n=1 Tax=Tribon... [more]
B7G9A5_PHATC1.050e-2251.95Predicted protein (Fragment) n=1 Tax=Phaeodactylum... [more]
A0A8J8NGV7_HALGN7.860e-2050.70Uncharacterized protein n=1 Tax=Halteria grandinel... [more]
A0A6H5JMK3_9PHAE1.090e-1954.93MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A7S3WDS7_EMIHU2.720e-1954.93Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
A0A7S3APN2_9EUKA2.990e-1952.11Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
UPI0005C88B333.030e-1952.86transcription factor MYB98-like n=1 Tax=Fragaria v... [more]
D7G0Z5_ECTSI3.790e-1956.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18614contigEcto-sp13_S_contig18614:592..828 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score143.3
Seed ortholog evalue4.5e-32
Seed eggNOG ortholog2880.D8LH85
Model size237
KEGG koko:K09420
KEGG Pathwayko04151,ko05166,map04151,map05166
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.RNA polymerase II transcription regulator recruiting activity
EggNOG OGsCOG5147@1,KOG0048@2759
Cds size216
COG Functional cat.ADK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462955.1267715-CDS-Ecto-sp13_S_contig18614:591..8071681462955.1267715-CDS-Ecto-sp13_S_contig18614:591..807Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18614 592..807 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462955.1424465-UTR-Ecto-sp13_S_contig18614:807..8281681462955.1424465-UTR-Ecto-sp13_S_contig18614:807..828Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18614 808..828 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18614.5835.1prot_Ecto-sp13_S_contig18614.5835.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18614 592..807 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18614.5835.1

>prot_Ecto-sp13_S_contig18614.5835.1 ID=prot_Ecto-sp13_S_contig18614.5835.1|Name=mRNA_Ecto-sp13_S_contig18614.5835.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=72bp
MPGRTAKQCRERYNNHVDPGIKKDKIWTAEEDALVMQLHAEHHNQFAKIA
RNIPGRCYDDVKNRRVSPVQSR
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mRNA from alignment at Ecto-sp13_S_contig18614:592..828-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18614.5835.1 ID=mRNA_Ecto-sp13_S_contig18614.5835.1|Name=mRNA_Ecto-sp13_S_contig18614.5835.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=237bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18614:592..828- (Ectocarpus species13 EcNAP12_S_4_19m)
TGGGCCAAGATCGCGGAGGTGATGCCGGGGAGAACGGCTAAACAGTGCCG CGAGCGATACAACAACCACGTAGACCCGGGCATCAAGAAGGACAAGATTT GGACGGCCGAGGAAGATGCCCTGGTGATGCAGTTGCACGCCGAACACCAC AACCAGTTCGCGAAGATAGCGAGGAACATTCCCGGTCGGTGCTACGACGA TGTCAAGAACAGGCGAGTCAGCCCGGTACAATCGCGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18614:592..828-

>mRNA_Ecto-sp13_S_contig18614.5835.1 ID=mRNA_Ecto-sp13_S_contig18614.5835.1|Name=mRNA_Ecto-sp13_S_contig18614.5835.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=216bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18614:592..828- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGGGGAGAACGGCTAAACAGTGCCGCGAGCGATACAACAACCACGT
AGACCCGGGCATCAAGAAGGACAAGATTTGGACGGCCGAGGAAGATGCCC
TGGTGATGCAGTTGCACGCCGAACACCACAACCAGTTCGCGAAGATAGCG
AGGAACATTCCCGGTCGGTGCTACGACGATGTCAAGAACAGGCGAGTCAG
CCCGGTACAATCGCGT
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