mRNA_Ecto-sp13_S_contig18614.5835.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig18614.5835.1 vs. uniprot
Match: A0A6H5KQ17_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ17_9PHAE) HSP 1 Score: 160 bits (406), Expect = 1.150e-45 Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1
Query: 1 WAKIAEVMPGRTAKQCRERYNNHVDPGIKKDKIWTAEEDALVMQLHAEHHNQFAKIARNIPGRCYDDVKNRRV 219
WAKIAEVMPGRTAKQCRERYNNHVDPGIKKDKIWTAEEDALVMQLHAEHHNQFAKIARNIPGRCYDDVKNRRV
Sbjct: 392 WAKIAEVMPGRTAKQCRERYNNHVDPGIKKDKIWTAEEDALVMQLHAEHHNQFAKIARNIPGRCYDDVKNRRV 464
BLAST of mRNA_Ecto-sp13_S_contig18614.5835.1 vs. uniprot
Match: D8LH85_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH85_ECTSI) HSP 1 Score: 157 bits (397), Expect = 2.500e-43 Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1
Query: 1 WAKIAEVMPGRTAKQCRERYNNHVDPGIKKDKIWTAEEDALVMQLHAEHHNQFAKIARNIPGRCYDDVKNR 213
WAKIAEVMPGRTAKQCRERYNNHVDPGIKKDKIWTAEEDALVMQLHAEHHNQFAKIARNIPGRCYDDVKNR
Sbjct: 521 WAKIAEVMPGRTAKQCRERYNNHVDPGIKKDKIWTAEEDALVMQLHAEHHNQFAKIARNIPGRCYDDVKNR 591
BLAST of mRNA_Ecto-sp13_S_contig18614.5835.1 vs. uniprot
Match: A0A835YSH7_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSH7_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 5.140e-23 Identity = 43/71 (60.56%), Postives = 53/71 (74.65%), Query Frame = 1
Query: 1 WAKIAEVMPGRTAKQCRERYNNHVDPGIKKDKIWTAEEDALVMQLHAEHHNQFAKIARNIPGRCYDDVKNR 213
WA+I MPGR KQCRERY NH+DP +KK WT EEDAL+ +LH + +N +A IAR +PGRC +DVKNR
Sbjct: 78 WAQICMHMPGRVGKQCRERYLNHLDPSLKKTP-WTPEEDALLTELHTKMNNSWADIARQMPGRCDNDVKNR 147
BLAST of mRNA_Ecto-sp13_S_contig18614.5835.1 vs. uniprot
Match: B7G9A5_PHATC (Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G9A5_PHATC) HSP 1 Score: 92.4 bits (228), Expect = 1.050e-22 Identity = 40/77 (51.95%), Postives = 57/77 (74.03%), Query Frame = 1
Query: 1 WAKIAEVMPGRTAKQCRERYNNHVDPGIKKDKIWTAEEDALVMQLHAEHHNQFAKIARNIPGRCYDDVKNRRVSPVQ 231
WAKIA +PGR KQCRER+ NH+DP +KK + WT +E+A+++ +H H N++A IA+N+PGR +DVKN S +Q
Sbjct: 23 WAKIAAFLPGRQGKQCRERFVNHLDPELKKGE-WTDDEEAILIAMHEHHGNRWANIAKNLPGRSDNDVKNHWYSTIQ 98
BLAST of mRNA_Ecto-sp13_S_contig18614.5835.1 vs. uniprot
Match: A0A8J8NGV7_HALGN (Uncharacterized protein n=1 Tax=Halteria grandinella TaxID=5974 RepID=A0A8J8NGV7_HALGN) HSP 1 Score: 91.7 bits (226), Expect = 7.860e-20 Identity = 36/71 (50.70%), Postives = 57/71 (80.28%), Query Frame = 1
Query: 1 WAKIAEVMPGRTAKQCRERYNNHVDPGIKKDKIWTAEEDALVMQLHAEHHNQFAKIARNIPGRCYDDVKNR 213
W+ IA +PGR KQCRER++NH+DP I+K+K W+AEED +++++H EH N++ +IA+++PGR + +KNR
Sbjct: 202 WSTIAAALPGRIGKQCRERWHNHLDPNIRKEK-WSAEEDRIILEMHQEHGNKWCEIAKSLPGRTDNAIKNR 271
BLAST of mRNA_Ecto-sp13_S_contig18614.5835.1 vs. uniprot
Match: A0A6H5JMK3_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMK3_9PHAE) HSP 1 Score: 91.3 bits (225), Expect = 1.090e-19 Identity = 39/71 (54.93%), Postives = 54/71 (76.06%), Query Frame = 1
Query: 1 WAKIAEVMPGRTAKQCRERYNNHVDPGIKKDKIWTAEEDALVMQLHAEHHNQFAKIARNIPGRCYDDVKNR 213
W+ +A+ +PGR AKQCRERY NH+DP ++KD WT +E+AL+M+L NQ+A+I R + GR Y+DVKNR
Sbjct: 1056 WSDLAKHIPGRIAKQCRERYLNHLDPSLRKDMPWTEDEEALLMRLCFAKQNQWAEICRQLHGRSYNDVKNR 1126
BLAST of mRNA_Ecto-sp13_S_contig18614.5835.1 vs. uniprot
Match: A0A7S3WDS7_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3WDS7_EMIHU) HSP 1 Score: 87.8 bits (216), Expect = 2.720e-19 Identity = 39/71 (54.93%), Postives = 57/71 (80.28%), Query Frame = 1
Query: 1 WAKIAEVMPGRTAKQCRERYNNHVDPGIKKDKIWTAEEDALVMQLHAEHHNQFAKIARNIPGRCYDDVKNR 213
WA+IA V+PGRT KQCRER+ N++DP +KK WTA+EDA++++LHA ++A+IA+++PGR + VKNR
Sbjct: 62 WARIASVLPGRTGKQCRERWCNNLDPMLKKGG-WTADEDAVILRLHASLGTRWAEIAKSLPGRSDNSVKNR 131
BLAST of mRNA_Ecto-sp13_S_contig18614.5835.1 vs. uniprot
Match: A0A7S3APN2_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3APN2_9EUKA) HSP 1 Score: 87.8 bits (216), Expect = 2.990e-19 Identity = 37/71 (52.11%), Postives = 57/71 (80.28%), Query Frame = 1
Query: 1 WAKIAEVMPGRTAKQCRERYNNHVDPGIKKDKIWTAEEDALVMQLHAEHHNQFAKIARNIPGRCYDDVKNR 213
WA+IA ++PGRT KQCRER+ N++DP +KK WTAEED +++++HA+ ++A+IA+++PGR + VKNR
Sbjct: 48 WARIASMLPGRTGKQCRERWCNNLDPSLKKG-AWTAEEDQIILKMHAKLGTRWAEIAKSLPGRSDNSVKNR 117
BLAST of mRNA_Ecto-sp13_S_contig18614.5835.1 vs. uniprot
Match: UPI0005C88B33 (transcription factor MYB98-like n=1 Tax=Fragaria vesca subsp. vesca TaxID=101020 RepID=UPI0005C88B33) HSP 1 Score: 87.8 bits (216), Expect = 3.030e-19 Identity = 37/70 (52.86%), Postives = 55/70 (78.57%), Query Frame = 1
Query: 1 WAKIAEVMPGRTAKQCRERYNNHVDPGIKKDKIWTAEEDALVMQLHAEHHNQFAKIARNIPGRCYDDVKN 210
W+ IA+++PGR KQCRER++NH+ P IKKD IW+ EED +++Q HAE N++A+IA+ +PGR + +KN
Sbjct: 18 WSHIAQMLPGRIGKQCRERWHNHLRPDIKKD-IWSEEEDKILIQAHAEIGNKWAEIAKRLPGRTENSIKN 86
BLAST of mRNA_Ecto-sp13_S_contig18614.5835.1 vs. uniprot
Match: D7G0Z5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Z5_ECTSI) HSP 1 Score: 89.7 bits (221), Expect = 3.790e-19 Identity = 40/71 (56.34%), Postives = 54/71 (76.06%), Query Frame = 1
Query: 1 WAKIAEVMPGRTAKQCRERYNNHVDPGIKKDKIWTAEEDALVMQLHAEHHNQFAKIARNIPGRCYDDVKNR 213
W++I++ MPGR KQCRERY NH+DP ++ WT EE+ L++ LHA +NQ+A+IAR IPGR +DVKNR
Sbjct: 649 WSQISDHMPGRVGKQCRERYLNHLDPSLRHGP-WTEEEERLLLSLHARLNNQWAEIARQIPGRSDNDVKNR 718 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18614.5835.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig18614.5835.1 >prot_Ecto-sp13_S_contig18614.5835.1 ID=prot_Ecto-sp13_S_contig18614.5835.1|Name=mRNA_Ecto-sp13_S_contig18614.5835.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=72bp MPGRTAKQCRERYNNHVDPGIKKDKIWTAEEDALVMQLHAEHHNQFAKIAback to top mRNA from alignment at Ecto-sp13_S_contig18614:592..828- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig18614.5835.1 ID=mRNA_Ecto-sp13_S_contig18614.5835.1|Name=mRNA_Ecto-sp13_S_contig18614.5835.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=237bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18614:592..828- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18614:592..828- >mRNA_Ecto-sp13_S_contig18614.5835.1 ID=mRNA_Ecto-sp13_S_contig18614.5835.1|Name=mRNA_Ecto-sp13_S_contig18614.5835.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=216bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18614:592..828- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |