mRNA_Ecto-sp13_S_contig1857.5813.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1857.5813.1
Unique NamemRNA_Ecto-sp13_S_contig1857.5813.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1857.5813.1 vs. uniprot
Match: D8LBY5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBY5_ECTSI)

HSP 1 Score: 603 bits (1554), Expect = 8.690e-207
Identity = 303/323 (93.81%), Postives = 313/323 (96.90%), Query Frame = 3 
Query:  477 VGTKQSLLSGFLKRRKRDIALVVLTVILLVSAWLLWPILFSLRVDGTTSMSWAAVWTPLWIADSIGLMFFVFLVSWGPIRAPAEWQGEWRDPYPMSMRVLALVKWGLLVLFQVTLVLRLDRHISWSWEEVLAPLMAWVCLRIVGELYRIVLQTKRLFVGRVIAAIKAIGEAAMLFLQVLFLMWRLDGEVDWNWWVVFIPTWLLHAGQLFTWCTNQALAMSLARGLEDHEGSTEEQRRKLLEASVLMDNAKHSRKLLGGTLVTSVLAVYLVAGADYSAFIVFLPQFFSAIWFTFAVTCLVCFAERRARQEEADGAEGEGFNTDV 1445
            +G  +SLL+GFLKRRKRDIALVVLTVILLVS  LLWPILFSLRVDGTTSMSWAAVWTPLWI D IGLMFFVF+VSWGPI+APAEWQGEWRDPYPMSMRVLALVKWGLLVLFQV LVLRLDRHISWSWEEVLAPLMAWV LRI GELYRIVLQTKRLFVGRVIAAIKA+GEAAMLFLQVLFLMWRLDGEV+WNWWVVF+PTWLLHAGQLFTWCTNQALAMSLARGLED++GSTEEQRRKLLEASVLMDNAKHSRKLLGGTLVTSVLAVYLVAGADYSAFIVFLPQFFSAIWFTF VTCLVCFAERRARQEEADGAEGEGFNTDV
Sbjct:   32 LGGTESLLNGFLKRRKRDIALVVLTVILLVSVSLLWPILFSLRVDGTTSMSWAAVWTPLWITDGIGLMFFVFIVSWGPIKAPAEWQGEWRDPYPMSMRVLALVKWGLLVLFQVLLVLRLDRHISWSWEEVLAPLMAWVWLRIAGELYRIVLQTKRLFVGRVIAAIKAMGEAAMLFLQVLFLMWRLDGEVNWNWWVVFVPTWLLHAGQLFTWCTNQALAMSLARGLEDNDGSTEEQRRKLLEASVLMDNAKHSRKLLGGTLVTSVLAVYLVAGADYSAFIVFLPQFFSAIWFTFVVTCLVCFAERRARQEEADGAEGEGFNTDV 354
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1857.5813.1 vs. uniprot
Match: A0A6H5JKW2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKW2_9PHAE)

HSP 1 Score: 537 bits (1383), Expect = 2.470e-182
Identity = 265/274 (96.72%), Postives = 270/274 (98.54%), Query Frame = 3 
Query:  624 MSWAAVWTPLWIADSIGLMFFVFLVSWGPIRAPAEWQGEWRDPYPMSMRVLALVKWGLLVLFQVTLVLRLDRHISWSWEEVLAPLMAWVCLRIVGELYRIVLQTKRLFVGRVIAAIKAIGEAAMLFLQVLFLMWRLDGEVDWNWWVVFIPTWLLHAGQLFTWCTNQALAMSLARGLEDHEGSTEEQRRKLLEASVLMDNAKHSRKLLGGTLVTSVLAVYLVAGADYSAFIVFLPQFFSAIWFTFAVTCLVCFAERRARQEEADGAEGEGFNTDV 1445
            MSWAAVWTPLWIADSIGLMFFVFLVSWGPI+APAEWQGEWRDPYPMSMRVLALVKWGLLVLFQV LVLRLD HISWSWEEVLAPLMAWV LRI+GELYRIVLQTKRLFVGRV+AAIKA+GEAAMLFLQVLFLMWRLDGEV WNWWVVF+PTWLLHAGQLFTWCTNQALAMSLARGLEDHEGSTEEQRRKLLEASVLMDNAKHSRKLLGGTLVTSVLAVYLVAGADYSAFIVFLPQFFSAIWFTFAVTCLVCFAERRARQEEADGAEGEGFNTDV
Sbjct:    1 MSWAAVWTPLWIADSIGLMFFVFLVSWGPIKAPAEWQGEWRDPYPMSMRVLALVKWGLLVLFQVLLVLRLDHHISWSWEEVLAPLMAWVWLRIIGELYRIVLQTKRLFVGRVVAAIKAMGEAAMLFLQVLFLMWRLDGEVAWNWWVVFVPTWLLHAGQLFTWCTNQALAMSLARGLEDHEGSTEEQRRKLLEASVLMDNAKHSRKLLGGTLVTSVLAVYLVAGADYSAFIVFLPQFFSAIWFTFAVTCLVCFAERRARQEEADGAEGEGFNTDV 274
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1857.5813.1 vs. uniprot
Match: A0A6H5K446_9PHAE (J domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K446_9PHAE)

HSP 1 Score: 240 bits (613), Expect = 8.880e-66
Identity = 133/322 (41.30%), Postives = 196/322 (60.87%), Query Frame = 3 
Query:  486 KQSLLSGFLKRRKRDIALVVLTVILLVSAWLLWPILFSLRVDGTTSMSWAAVWTPLWIADSIGLMFFVFLVSWGPIRAPAEWQGEWRDPYPMSMRVLALVKWGLLVLFQVTLVLRLDRHISWSWEEVLAPLMAWVCLRIVGELYRIV-----------------------LQTKRLFVGRVIAAIKAIGEAAMLFLQVLFLMWRLDGEVDWNWWVVFIPTWLLHAGQLFTWCTNQALAMSLARGLED--HEGSTEEQRRKLLEASVLMDNAKHSRKLLGGTLVTSVLAVYLVAGADYSAFIVFLPQFFSAIWFTFAVTCLVC 1376
            K +++  FL+   RD   +V+ V+L V A LLWPILF  +VDG TS SW A+WTPLWI D++GL +F++L+S G I+AP   +  W DP+P+ +RVLALVKW LL LFQV L ++LD  I WS+  V +PL+AW+ L IVG +Y                          ++ +   + +   A  A+ +  +  LQ++FL+ +LDG+VDWNWW+VF+PTW++  GQL  +  + +LA +L+ G+E    E  T+E+R +++ AS L+ +A         T+VT VLAV  +AGADYS F++F+PQF  A       TC +C
Sbjct:  105 KDNMIKNFLRMGTRDRLRLVVFVLLFVGAVLLWPILFCAKVDGDTSASWVALWTPLWIYDALGLWYFMYLISLGQIKAPEGMEEGWTDPFPLPLRVLALVKWTLLFLFQVFLTMQLDGDIDWSYAVVGSPLLAWMGLLIVGHVYDATRPVPQDRSEESILNAEEEGIPPDVEKREQAIAKRSEARTAVAKDCIWMLQLVFLIIKLDGDVDWNWWLVFLPTWIVLFGQLVGYYVDYSLARNLSAGIEGKAEEELTQEERVRMVAASQLLVHASXXXXXWVFTVVTVVLAVNAIAGADYSTFVIFIPQFIIAGTLLCCATCFIC 426
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1857.5813.1 vs. uniprot
Match: A0A7S4UY41_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4UY41_9STRA)

HSP 1 Score: 105 bits (261), Expect = 1.510e-19
Identity = 80/256 (31.25%), Postives = 120/256 (46.88%), Query Frame = 3 
Query:  501 SGFLKRRKRDIALVVLTVILLVSAWLLWPILFSLRVDGTT--SMSWAAVWTPLWIADSIGLMFFVFLVSWGPIRAPAEW-QGEWRDPYPMSMRVLALVKWGLLVLFQVTLVLRLDRHISWSWEEVLAPLMAWVC-----------LRIV---------GELYRIVLQTKRLFVGRVIAAIKAIG----EAA-------------MLF--LQVLFLMWRLDGEVDWNWWVVFIPTWLLHAGQLFTWCTNQALAMSLA 1142
            S  L R K  +  VV+ VI+      L P+L  L VDG    S  W  V TPLWI D + L +   ++  GP + P    Q EW DP PM  R+ +L ++ LLV+F++ + LRLD    W W  +  PL  W C           +RIV         G+ +    Q ++  + +    + +      EAA             ++F  + ++FL+++LD E+D NWWVVF+P WL+     F  C N A   ++A
Sbjct:  120 SSALDRSKIFLIFVVIAVIIF-----LLPVLVCLMVDGHLGPSAEWTTVLTPLWIWDLVILFYHFRVIMMGPFKKPDHIPQEEWVDPLPMPKRIFSLFRFCLLVIFEILVALRLDDAFQWKWYFIFIPLYIWECTMVYKKVPLAKMRIVTVEDLENALGKPFAEFTQAEKDLISKKYTVVPSTSSPQFEAAYKVKTRARQDVVKLIFRVVFIIFLVFQLDTEMDMNWWVVFVPLWLMSFCICFANCQNFAEVQAMA 370
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1857.5813.1 vs. uniprot
Match: A0A7S1UVB4_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UVB4_9STRA)

HSP 1 Score: 103 bits (256), Expect = 4.850e-19
Identity = 107/363 (29.48%), Postives = 152/363 (41.87%), Query Frame = 3 
Query:  573 WLLWPILFSLRVDGTTSMSWAAVWTPLWIADSIGLMFFVFLVSWGPIRAPAEWQGE-WRDPYPMSMRVLALVKWGLLVLFQVTLVLRLDRHIS-WSWEEVLAPLMAW-----------VCLRIV------------------------GELYRIVLQTKRL-FVGRVIAAIKAIGEAAMLFLQVLF---LMWRLDGEVDWNWWVVFIPTWLLHAGQLFTWCTNQALAMSLARGLEDH-----------------------EGS-----TEEQRRKLLEASVLMDNAKHSRKLL--GGTLVTSVLAVYLVAGADYSAFIVFLPQFFSAIWFTFAVTCLVCFAERRARQEEADGAEGE-GFNTDV 1445
            WL  PI+  L VD     +WA    PLWI D+    +   ++  GPI  P     E W DP PMS R+ +L ++GLLVLFQV +VLRLD  +S W W  V  PL  W             +RIV                        G+ Y +V  T    F       ++A  +      +++F   L+ +LDG VDWNWW +F P W++    LF +   QA A      +E                         +G      TEE+R +L +A V+  +++   K    G  L+  +L V  V GA YS+F +  P    A      + C + FA     +   DG E + G +TDV
Sbjct:  142 WL--PIMVCLHVDDVLKATWAGTLLPLWIWDAFIFFYHSRVIMMGPIPRPDHISPEDWVDPLPMSKRIFSLARFGLLVLFQVLMVLRLDGVVSSWPWAVVFGPLYIWEFTTLWKKWPLARMRIVTVEDLETALGKPFSEFTVAEKELIGQRYSVVPSTTSPEFEAAQKLKVRARHDMIKSGFRIVFCVLLLCQLDGRVDWNWWFIFTPFWVMTL--LFCYANYQAFAEVQQMAMEKDPTLFGNIPPNQQQQQVGAFPTGKDGQPISPLTEEEREEL-KAHVMASSSRLCSKCCSQGFLLMIVLLFVGKVQGAGYSSFWILSPLLTMAGM----ILCCIGFAIFGITEVPTDGVEFDTGEDTDV 495
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1857.5813.1 vs. uniprot
Match: A0A7S2U8A7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U8A7_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 2.980e-18
Identity = 64/209 (30.62%), Postives = 98/209 (46.89%), Query Frame = 3 
Query:  585 PILFSLRVDGTTSM--SWAAVWTPLWIADSIGLMFFVFLVSWGPIRAPAEW-QGEWRDPYPMSMRVLALVKWGLLVLFQVTLVLRLDRHISWSWEEVLAPLMAWVC-----------LRIV---------GELYRIVLQTKRLFVGRVIAAIKAIG-------------------EAAMLFLQVLFLMWRLDGEVDWNWWVVFIPTWLL 1085
            PIL  L+VD       SW AV TPLW+ D++ L++   ++  GPI  P    Q EW DP PMS R+ +L ++ L+V+F+V   LRLD+HI W W E+  P+  W             ++IV         G+ +      ++  + R  + + +                     + A   L   FL+  LD  +DWNWW VF+P W++
Sbjct:  107 PILVCLQVDNVFGKHSSWLAVLTPLWVWDAVILLYHSRVIMLGPIPKPDHIPQEEWVDPLPMSKRIFSLFRFLLVVIFEVLGALRLDKHIDWKWSEIFIPVYIWETTTFYKKWPIARMKIVTVEDLETALGKSFAEFTAAEKELISRRYSVVPSTSCPEFDVAHKVKSRARQDLIKLAFRILFYAFLITELDTNLDWNWWGVFVPFWIM 315
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1857.5813.1 vs. uniprot
Match: A0A7S3DXM8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DXM8_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 8.150e-14
Identity = 64/212 (30.19%), Postives = 97/212 (45.75%), Query Frame = 3 
Query:  576 LLWPILFSLRVDGT--TSMSWAAVWTPLWIADSIGLMFFVFLVSWGPIRAPAEWQGE-WRDPYPMSMRVLALVKWGLLVLFQVTLVLRLDRHISWSWEEVLAPLMAWVC-----------LRIV---------GELYRIVLQTKRLFVGRVIAAIKAIG----EAAM-------------LF--LQVLFLMWRLDGEVDWNWWVVFIPTWLL 1085
            L+ P L  L VDGT     SW A   PLW  D+  L + + ++  GPI+ P     E W DP PM  R  +L ++ L+VLF++ + L+LD   +  W  +  PL  W             +RIV         G+ +    Q ++  +G+    +  +     EAA              LF  + V+ L+ +LDG  DWNWW+VF P W++
Sbjct:   43 LILPFLVCLHVDGTFGPDASWFATLIPLWFWDAFILFYHIRVILMGPIQKPDHIPAEEWVDPLPMKKRFFSLARFLLIVLFELLVALKLDLIANIPWSVIFFPLYIWEATTLYKKWPLARMRIVTVEDLEQALGKPFTQFTQPEKDLIGKRYNVVPNLNCPEFEAAQKLKVRARHDIIKSLFRVVFVIVLLVQLDGNFDWNWWIVFSPFWVM 254
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1857.5813.1 vs. uniprot
Match: A0A448ZRQ1_9STRA (J domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZRQ1_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 2.930e-10
Identity = 59/248 (23.79%), Postives = 102/248 (41.13%), Query Frame = 3 
Query:  489 QSLLSGFLKRRKRDIALVVLTVILLVSAWLLWPILFSLRVDGTTS--MSWAAVWTPLWIADSIGLMFFVFLVSWGPIRAP-AEWQGEWRDPYPMSMRVLALVKWGLLVLFQVTLVLRLDRHISWSWEEVLAPLMAWVCLRI-----VGELYRIVLQTKRLFVGRVIA----------------------------------AIKAIGEAAMLFLQVLFLMWRLDGEVDWNWWVVFIPTWLLHAGQLFT 1106
            Q L   F +    D + +    + L  A L  P+   L +DG      SW+    PLWI +++ L +   +++   + AP      EW DP+PM  R+ +L ++ LLV  ++ L L+LD  +  +W  V  P+  W    +     +  L  + ++     +G+ +                                   A + + ++A   + +  L  RLD   DWNWW+VF+P W+L  G   T
Sbjct:  114 QELAGNFARSSVLDRSKIFAIFVGLAVALLALPVAVCLHLDGDLGDDASWSVTLVPLWIWNAMALFYHSRVLTMPTVSAPDGVPPEEWIDPFPMKDRIRSLFRFLLLVSAEILLALKLDEVLECAWGLVFLPVYLWEAANVHEQWPLSRLRTLTVEDLEAALGKPLGECTADETEAIRRAYVVVPSAESPEFAEAEERKARAARELAKSAARAIVLSALAVRLDTRADWNWWLVFLPVWILSLGACLT 361
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1857.5813.1 vs. uniprot
Match: A0A7S2L9P4_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2L9P4_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 8.390e-10
Identity = 70/250 (28.00%), Postives = 103/250 (41.20%), Query Frame = 3 
Query:  489 QSLLSGFLKRRKRDIALVVLTVILLVSAWLLWPILFSLRVDGT--TSMSWAAVWTPLWIADSIGLMFFVFLVSWGPIRA---------PAEWQGEWRDPYPMSMRVLALVKWGLLVLFQVTLVLRLDRHISWSWEEVLAPLMAWVCLRI-----VGELYRIVLQTKRLFVGR----------------------------VIAAIKAIGEAAMLFLQVLF-------LMWRLDGEVDWNWWVVFIPTWLL 1085
            Q + S F      D + + L  + ++   LL PIL  L+VD    +S +W  V  PLWI D+     F+FL     +RA         P E   EW DP P S R    ++  L V F++ + LRLD  I   W  V  PL  +  L I     V  L  + ++   + +G+                             + A+K    A    L++ F       L+ +LD E+DW+WW VF P W+L
Sbjct:  113 QEVFSNFANSSVYDRSKIFLLFVAIIGILLLVPILVCLQVDEDLGSSTTWCEVLIPLWIYDA-----FLFLTHLNMLRAGETPRPEGMPEE---EWVDPLPYSKRRFIALRHILKVTFEILVALRLDDVIECDWSVVFLPLWIFEALNIRKKMVVANLQILTIEDLEVLLGKPFSEFTPEERDAISGKDFAVVPSMDSPQAMIALKMKTMAQHDLLKIFFRDVFLVLLILQLDDEIDWSWWAVFTPFWIL 354
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1857.5813.1 vs. uniprot
Match: A0A2B4S696_STYPI (Transmembrane protein 185B n=2 Tax=Pocilloporidae TaxID=46729 RepID=A0A2B4S696_STYPI)

HSP 1 Score: 64.3 bits (155), Expect = 3.970e-7
Identity = 50/170 (29.41%), Postives = 85/170 (50.00%), Query Frame = 3 
Query:  579 LWPILFSLRVDGTTSMSWAAVWTPLWIADSIGLM-FFVFLVSWGPIRAPAEWQGEWRDPYPMSMRVLALVKWGLLVLFQVTLVLRLDRHISWSWEEVLAPLMAWVCLRIVGELYRIVLQTKRLFVGRVIAAIKAIGEAAMLFLQVLFLMWRLDGEVDWNWWVVFIPTWLL 1085
            ++ IL +LR+DGT + S+ AV+TP+WI   + L   F  +  W  IR P E++GE          ++ L    LL++F++ + + L     + W  +  PL     L I+  ++            R   A++     ++  LQ +FL  RLD  + W+W VVF+PTW++
Sbjct:   23 IFSILLALRLDGTITWSYWAVFTPIWIWKIMVLSGAFTGIYIW--IRHP-EYRGEGDSHVDFKAMIICLALHLLLLMFEIFVCINLGGGRMFPWRLMFMPLYVLSSLSIIACIWGF----------RHDRAVELETVFSVNVLQFIFLSLRLDRVILWSWVVVFVPTWIV 179
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1857.5813.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D8LBY5_ECTSI8.690e-20793.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JKW2_9PHAE2.470e-18296.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K446_9PHAE8.880e-6641.30J domain-containing protein n=2 Tax=Ectocarpus Tax... [more]
A0A7S4UY41_9STRA1.510e-1931.25Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S1UVB4_9STRA4.850e-1929.48Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S2U8A7_9STRA2.980e-1830.62Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A7S3DXM8_9STRA8.150e-1430.19Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
A0A448ZRQ1_9STRA2.930e-1023.79J domain-containing protein n=1 Tax=Pseudo-nitzsch... [more]
A0A7S2L9P4_9STRA8.390e-1028.00Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A2B4S696_STYPI3.970e-729.41Transmembrane protein 185B n=2 Tax=Pocilloporidae ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1857contigEcto-sp13_S_contig1857:7717..15275 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score200.7
Seed ortholog evalue9e-49
Seed eggNOG ortholog2880.D7G6F0
Model size2900
KEGG koko:K10752
KEGG Pathwayko04218,map04218
Hectar predicted targeting categorysignal peptide
Exons9
EggNOG free text desc.protein folding
EggNOG OGsCOG0484@1,KOG0714@2759
Ec32 ortholog descriptionTransmembrane Fragile-X-F-associated protein
Ec32 orthologEc-20_003750.3
Cds size825
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1857.5813.1prot_Ecto-sp13_S_contig1857.5813.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1857 9169..14652 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462953.1949494-UTR-Ecto-sp13_S_contig1857:7716..91681681462953.1949494-UTR-Ecto-sp13_S_contig1857:7716..9168Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1857 7717..9168 -
1681462953.2992797-UTR-Ecto-sp13_S_contig1857:14652..152751681462953.2992797-UTR-Ecto-sp13_S_contig1857:14652..15275Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1857 14653..15275 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462953.2083483-CDS-Ecto-sp13_S_contig1857:9168..91761681462953.2083483-CDS-Ecto-sp13_S_contig1857:9168..9176Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1857 9169..9176 -
1681462953.2177186-CDS-Ecto-sp13_S_contig1857:9593..97051681462953.2177186-CDS-Ecto-sp13_S_contig1857:9593..9705Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1857 9594..9705 -
1681462953.2268233-CDS-Ecto-sp13_S_contig1857:10356..105091681462953.2268233-CDS-Ecto-sp13_S_contig1857:10356..10509Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1857 10357..10509 -
1681462953.2365966-CDS-Ecto-sp13_S_contig1857:10750..108851681462953.2365966-CDS-Ecto-sp13_S_contig1857:10750..10885Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1857 10751..10885 -
1681462953.2463603-CDS-Ecto-sp13_S_contig1857:11451..115171681462953.2463603-CDS-Ecto-sp13_S_contig1857:11451..11517Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1857 11452..11517 -
1681462953.2618272-CDS-Ecto-sp13_S_contig1857:12395..124491681462953.2618272-CDS-Ecto-sp13_S_contig1857:12395..12449Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1857 12396..12449 -
1681462953.2708254-CDS-Ecto-sp13_S_contig1857:12988..130961681462953.2708254-CDS-Ecto-sp13_S_contig1857:12988..13096Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1857 12989..13096 -
1681462953.2795894-CDS-Ecto-sp13_S_contig1857:13860..140001681462953.2795894-CDS-Ecto-sp13_S_contig1857:13860..14000Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1857 13861..14000 -
1681462953.2902453-CDS-Ecto-sp13_S_contig1857:14603..146521681462953.2902453-CDS-Ecto-sp13_S_contig1857:14603..14652Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1857 14604..14652 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1857.5813.1

>prot_Ecto-sp13_S_contig1857.5813.1 ID=prot_Ecto-sp13_S_contig1857.5813.1|Name=mRNA_Ecto-sp13_S_contig1857.5813.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=275bp
MSWAAVWTPLWIADSIGLMFFVFLVSWGPIRAPAEWQGEWRDPYPMSMRV
LALVKWGLLVLFQVTLVLRLDRHISWSWEEVLAPLMAWVCLRIVGELYRI
VLQTKRLFVGRVIAAIKAIGEAAMLFLQVLFLMWRLDGEVDWNWWVVFIP
TWLLHAGQLFTWCTNQALAMSLARGLEDHEGSTEEQRRKLLEASVLMDNA
KHSRKLLGGTLVTSVLAVYLVAGADYSAFIVFLPQFFSAIWFTFAVTCLV
CFAERRARQEEADGAEGEGFNTDV*
back to top

mRNA from alignment at Ecto-sp13_S_contig1857:7717..15275-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1857.5813.1 ID=mRNA_Ecto-sp13_S_contig1857.5813.1|Name=mRNA_Ecto-sp13_S_contig1857.5813.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=7559bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1857:7717..15275- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGACCTCAGCAGACGGCCATCGCTTGCCACGATGACTTCGTTCCCATTC
TGCTTGGCGGCACTCAGGTGAAAGCGTTTACAGTCGATTCGATTACCCCT
TAGGACGCCTCCCAGCGAGTAATACATAAACCAGACGTATGATGTTGCCT
TTTCCTTTTGGCTGCTCCCACAAGCACCTTCAAAGGATGTACCCGTCCCT
TGGAAGCGCGCGCGGTTGCTCGAAGAATCCTTGGCCTCCTTCCCGACCAT
CTACGCCCTCGACCGGTTCTCAACAATAGCCAACATCACACAACTGCGGC
TGCCACCCACCGGCAAGCCTCACTCAGGTGTCTTATCCCTACGCTTGGGG
AAACATCTATGATGTGTTTTGGTAGGTAAGACTGCTGTGTGTGCATGCGT
GTACAAGTTACGTCGAGTCTGCAGCGGCAAATATGCCGGCGTTGCTGCTG
CTGCTGCTGCTGCTGTCGCTGCACACGTTGGGACCAAACAGTCTCTGCTG
AGCGGCTTCCTCAAGAGACGCAAGCGAGACATCGCGTTGGTGGTGCTCAC
GGTCATTCTTCTGGTCAGCGCGTGGCTGCTGTGGCCCATATTGTTCTCCC
TGAGGGTAGACGGGACGACCTCCATGTCCTGGGCGGCCGTGTGGACCCCT
CTGTGGATTGCCGATAGCATCGGTAAGATACGCCCGTGCAGGACGAGAGC
TTTGTTGTCTTAGGAGTATAAAAGAAATGTTTTTCGGTGCGACATATCCT
CAGGAATGTCAGGATGGTATCTCGTGCGTGGCTTCCAACCACGATACCGA
TTCGTGGTTCGTTCTCGTGAGGGGTTTATTCCTAGACACCTTCAAGATAT
TACCCCACCATGGCGGTTGATATTACTGTTGAGAAAGTTAACGTCACTCC
AACTTTCGGAATGGTTAGACCTTGTGCACGTAGCAAAGACGAGGAATCAA
CAGCACGATTGGTCTTGTCACAAAGTTCGTTCCATCGCTTGCTGCAAATA
GGTACGGTTTACGCCGCCTCCTTCTCGGGCACATTTTGGTAGAGATAAAC
GACTGTCACTTTTTGACTGTGTTACATTTTTTGTGTTTTCGTAGGTTCAA
TCGTTCAATTGTTTGGCGCTTTCAATGTCGTGCTTCCCTTACCGGTTTAT
CGCGAGCTTGGCACTTGTGCCAGCCGTTGTTGGTGCTGCCCATGTGCGCA
CTCTTCAATCGTTTTTTTGCTTCACCACTTCTGCAGGGTTCATCGTTTTT
TTGCTCCACCGCTACTATAATACAGGGTTGATGTTCTTCGTGTTTCTAGT
GAGCTGGGGACCTATCAGGGCCCCGGCCGAGTGGCAGGGCGAGTGGCGAG
ACCCTTACCCGATGTCGATGAGGGTGCTTGCGCTCGTGAAATGGGGGTTG
CTCGTTTTGTTTCAGGTGTGTTACCTTGACCACGTCCACCGCTTTCGGCG
ATGCGGTAGACAATCTTGATCCCTTCGGCGTCCCTAAGCGCTCCCTGCTG
TAGACTTTGCGTGATTTTCCCTGGCCAAAGACTAATACTCTGTAGTGTTG
TGTGCATGTTCAAGTAGGCGCATCATTTACGAACAGATTTTGTGCGACAG
CGGGGCGTGGCGTGACGAGGCGAATAATGTGTGCTGTTTCCAGCCTATTG
TCTTCGGAAATCAAGGCTGTCCGACTACTGTTGGGTCAATGTACAAGCAC
AAGTTTGGGTTCCCCCCACCTGCCTTGATACGGCGGTCCTGGCGTAACAC
GGCACTTGGCACGCGCATAGACGGACTTGCCCTTCACATCTAGCACGTTC
CTATCCGCTGCCTTGGTGTCTTTACTGGGTGTCCTTTACTCTGGCGTTGA
AACTACTGCTCTCTCCTCCGCGCGTGTCGGAGATCAACGAACTACGTTGA
GCACCTTGCACGTCCATGGAAAGACGCAAAACTCCCACAGTGCTTTCTGG
CTCAATACAGTCGTGACCCTAACCCACGTAAGTGCCAAGGCGGTCATCGT
TTCTCGTTCTGTACTGCTGATTAGGTCTATATCACACGTTAGGGTTGCGT
GCACACCGATGCATACGTAGCTGCATAACCTTGCGTTAGTTTTCACCGCA
GCTGCGCTCACCCCTTGATTCCAACCCTGTAAATGAGCTAATCTCCAAGG
CAAATCCTCCCTCCACACGACAAGCGCAGGTAACGTTAGTTCTTAGGTTG
GATCGCCACATCAGCTGGTCTTGGGAGGAAGTCTTGGCGCCGCTCATGGC
GTGGGTCTGTCTGCGGATTGTTGGAGAGCTGTATAGGGTGCGTGTGGTGA
ATGCAATACTGGTTAAACTTTGGTAGCGCTGCAAACTTCGGGGCCCGTGG
TTGGATGGAAAAATAAGGTAGAGAGATCACCTCGTTTCGAGGTGGTTAAT
ACTTATTCAGCCTCAACAGTGCAAACCACCTGGCGTTTAAGAACAAGCCA
AAGTGAGTCTCTGTGGAAAAATCGAAGATCGTCGTTATCCCACGGCGGCC
CCGACATATTCGAAAGAGTAGTCACTGGATTGGGCGGCCTGCCTCCATGT
TTAGCGTCGCTTTTGGTAGGTCATGCTCAACATGCCAACGCCGCACGTTG
TCAAAAGTAGCTGGTAGGTTCGCCGAATACCGCGATGCGTGAGGAATCAA
ACCCCGCAGAATCGCCCATTCTCGCTTCCTGCGGGGGTAATTAGGGATGG
CCACGTGCCTATCTCCGACGTAATGTTTTGTCGTTGAACTTCAATCTTTC
CTACTCTAACCTAGCCCCACTCCACATCCCTCTGGTAATGCTTCTCTGGC
CGTCTTGTTGTTTCTCATGGGAGCAGATTGTGCTTCAGACGAAGCGGCTG
TTTGTGGGCAGAGTCATCGCCGCGATCAAGGTGAGGAAGAAGGAGTCGTC
GAGCTGAAAAACACGTCGAGAGAAGCAGTGATGTGTAACGCTTGCACGTG
CAACGCTGTCAAACAGAGAACCGTCCAGAACGTAGATCCCTCGTATTGTC
ATTGGTATCGTAAACGTTTGGGAACGCGCACAGTGTTGATGTCGTGGACA
ACTTTGGCAATAAGCCACAACACATCATGTCGGTTGCCATTTGAACGACT
TTTAGTTCTGCAACAATGATGGAGACTAATCGCCTCTACGACGACGCTCC
GGTTGCCCCCCTTGGTCCACGTACTCTTCGATTGCAACGCCGACGAAACA
ACCTCGAACAATAGCCCACCCCTGATTACGCATACCCCCTTTTCTTGACC
TGCTCCCGGTGTATTTGGCACGGATCACTCGCGGCATGTAGTATATTAAT
GTACATCAGCTTCCGTCTCGACGAGGCTGTCGAGTGGTTCTTCACGCCTA
CTACTCACTCCTGAGCAAGCGCTCTCCTGGTGGTCCTGGGTCTGTACAAT
GGCGATAAAGTGCCGTTCTTCTCGCTCCGCGGTGCCGGTTGCTTGTTGCT
ACTATCGCTACGTTAGGAGACAATAAGGGCTCCCAATCGAGCCGTGGTTC
TAGTCCCCTCCCAAGGGCTGTTGTGTACTTCTCCCATACTGTTGCCTGCC
CTATCGGTGTGTAATCCCCCCCCCCCTTCTCCGCCGGACATAGGCCATCC
CATGTTTCTACAACGCTTCGTTGTTCAATAGCGCTCGACTGGGCTGGATG
ACTTTTCTGCCTAGTCGTATTGTTCCGCGAGCACGCATGCGATTCTCATG
CGCGGGTTTTTCGCTTTGCCCTCTCGCGTGGCGCTACCGCCACTGTTGTT
GGACACAGGCGATTGGCGAGGCGGCCATGCTGTTCCTTCAAGTGTTGTTC
CTCATGTGGAGACTCGACGGCGAGGTGTGTGATGGCGTCCATATGGGCTT
TGCTGCTGCTGTGTTGTTGGTCTGTCGTCCCCTCTCAGGCTGCTGTGCGT
TCACATGATTGGATGGAAATCAAAGCCGTGTTGCTACAACAGCAACAACA
GCAACCAGAATTTTGTTACACCTTGTGCAAATGCGTGTATGTGTATGCGA
ATGTGATCGGATCAGTGAACATGGTCCAGGAGGGGTTTTGAATGCCAGCC
AGACTGCTGATACATGATGCAGGTTCAAATGCGTTCCAACTGGACGCTTG
TCGAGGCTGATTGACGAATGTTGAGGCTGATACTGTGCAAAGTAAGTGTG
CGTCCTTCGTTTTTCGCATTTCTTTTCCACCAGCATTCTCGGACATTGTT
ATTTCCAAGCTGCTCGACCTATGGCCTACGACGACAGGCTTTTTTGTGCG
CTCTTGTTGCAAAGCGTACGCCTTTAGGCTGCCTTGCTAGTCCTTAGTAG
GTGCCAATTGTTTCGCGTGCCGTGAAGTTTCAAACCGCGTCCCTTAATGT
CTCTGTTGTTCTTTGCGCATTCCGCTGCGTACTCTTGAAGGTGGACTGGA
ACTGGTGGGTGGTATTCATCCCCACATGGCTCCTCCACGCCGGGCAGCTG
TTCACCTGGTGTACGAACCAAGCCCTGGCGATGTCCCTCGCCCGGGGCCT
GGAGGACCACGAAGGCTCAACGGAGGTGTGATACCCACGTCCTTCCGTTG
AGGTTGATAAGTCGGTCTCCCAACAACGCCATTCATTCATCGTTTTGTCC
GCATCAGTTTTCTGGTAAAGCGGTTTGCCATCCGTACGAAGCCGCCCCGG
GCTCGTGTATGATGTACCCCGAGCTGTGTGCTTGCCGTTCCAGCAAGAAG
GACCGTCAAAACGTAAGCTTCCAACCTCACGCGAAGGATTTCGTGGCGTT
TTCCTTTTTTGTGCAGGAGCAACGTAGGAAGCTGCTGGAGGCATCCGTCC
TGATGGACAATGCCAAGCACTCCCGGAAGTTGTTAGGGGGAACCCTAGTG
ACGAGCGTGCTGGCGGTCTACCTGGTCGCTGGCGCAGACTACTCGGCTTT
CATCGTCTTCCTGCCGCAGGTACATGAACACCTCCAGCTTTCCTTTTTGG
AGGTCGAGAAGTGGTGCTTCGGAAGGGTGGTGGTGCGGTGCACGAAAGCG
GTGTCTTTGCGTCCGAGAAGGGTTCGGCGGCTTCCTCGTCGTTGTTGGGA
TTGAACTTTTGTCGCTTGAATGCTTGATTTCAATCGACTCCGGCACCAAG
TGCACACATCACCCAGCTTGCCGATGAAACCAGAAGACTGGGTGGGTTGG
GGAAGGGCTGCCTCTTCACATTGTGGTTTTCATCGCTCACCGGTGGTCCC
TTCTCTGCGGCACGCTCCTGTTAGATCTCGAGAAGTTCGACCCGAACGGA
TCTCCGCCTGCCCCTTAGTTAGCGAGGACCTTCAAAGGCAAACATCTTGT
TGCAGAGAGATTTGGTTGCAGTGGCGGAAGGGCACAACAGTCGTCATCGG
CGTCCCTCAACTTAGGGCAGTCACTCAGTTCATCTCTCTTTTCTTGGTTG
ACAGGCGTTGTTTTGACTGCCGATTCCCGCCTCCTACGTTCATTCAGCAT
TTCCCACGTGTCTCAACGTTGTCAATACTGTACCTTCGTTCCCAGCGTTA
GTGTTAGGAGCGTCTATTAACAACGCCTTTTCTTGCTCGGGTGTATGGTA
CATTGACGTTTTTCGCGCAGTTCTTTTCCGCCATCTGGTTCACTTTCGCG
GTGACGTGCCTCGTCTGCTTCGCCGAGCGACGGGCCCGACAGGAAGAGGC
CGATGGGGCTGAAGGGGAGGGTTTCAACACCGGTGAGTCAAATGGCGTTT
TAGACTTCCTCTTAGAATCGGGTACGACCCGTGAACTATTTTCTAGTGGC
AGGCAGTGTTAAATCATTATACGATGCTCCAGTTGCCGGGCCTGAGGACA
GTTGGGAGTGCCGCACTGTTGTGGGTGCGGGGTGTCGCATCGCTCGGGCT
GCGTCACGTAGCAGCTGGGGAGCCTCTTGTGATGTTTCTTGGTTTTGGGT
GGAAGATGTGGGAGATATATCGTCGTTGAAAAATGTAGGCCGCCATGCCA
AACATGGCACACGCCTAGCATTCTCACGTGATCTTTGCTTTCATCTGATT
TTGAGCCGCTCTCTATCTCTCGAAGTATCTCTTGAGCTCTTCAGTGACGA
ACGTGACCCTCTACTGTTTTCGTTCCCTTCTCCTCTTCGCCGAAATCAGA
CGTGTGATTCCGGTACTTGCTAAGGCGCCTTGCCTTGCCCGAGGCGACCG
AATCACGCTTTGGTCATCGTGTCACAGTAGGTCGCCTTCCCTGTATCTGC
CTGAGGATGCTGCTGTAACAGCAACACAGGCAACTGCTACAATCCAGTGT
CGAATCGTTGAATAGGTCAGAAAAATTAAGACGCCCGTAAGAACGTGATT
GCAAGAGGGTTGGGTGACGCGAGATCTGGCTGACGAACCGAACCCCCGTT
CACTTCACGCACCGTGGTTGATCTTCGAGAGTAGACGAAGCGGGATGTGC
TGTACAGCTCCAATTTGCGGTAGTACGGGAGGTCGTGCATGATAAATGTA
CCCCTACGCAGCACCACCGTGTGCCAACGTCCGCTCTTTCGGGTGGTTGC
TCGTGTTGGAGGTGCCGTTGCACAGAATCTGCGCTGCTTCCGGTTGATGT
GGACAAAAAACTGAACAAAGCTGCTGGGGATGTGTATTTTGATGTTTTAC
CCAAAACTTGACGGCGGAGTTTGATCGGCGCTCGCGTGAGGGTATCATTG
AAGCAAGGTTGTCGTGGTGCGCTGTAGATGGCGCCGGGTATGAACCACCT
ACCTGAGGCCGATCCGAGGTTAACCGCCCTGAGCTCTCAGTACGTGCACG
GTCGCACGAGGGTCCTGGTTTCATGGTGTAGGTCGGTGCGTAGGCTGGGG
AGTTCTCCATGCGGAAAATTAGCGGTTTCGTCGGCCGCGGGCGGCGGAAT
TGCAGCTGGGGATAGCCGAATCGCTGTTCGTAGCCGGCGCTTTTCTCACC
ACCAGCGTTCCCGAGACTTGCGGATGATGCCTACTCTGTCCGAGCGCATC
GAGCCGCGGCCAGCATGGGGCTACATCTTGCTCAGTCGTGGAGAACGTCG
TGGAGAACAAATCGTGGATTGGCCTTCAGGCGCGCGGGTCTTGTGAGGAG
GTGTTTATTTTATTCCTTTCCCGATGCTTTGCCTGCGATGCGAGCTGAAA
CGCTCGGTGCGTTAGCGAGGGCTTGTGTGTGCGGGGGCAGGGAGGCGAGC
CTCGTCATCGCAGCTTGTTGAGATCAGAGAAATTCAGCCGCGGCGAAGAC
CAAAATGCAGAAGACACTGCAAGGATGTAAGAAATTATGCTAGTGTGGGC
AAAAGCAGGACACAATCCGTGCGTTTAGCACCGGTGTCGCTTCGATTGAA
ATTCCTTCGACAGGACCGTCGAGGCATAGGTCGCGCGAAGGCACCGCCGC
GATTTCGTGCGCGTAGCTTTCGCGAGTTGATGAAATTTGACTGCGGCCAA
CAGATCCTGAATAAATCACGGGGGGAAATTGTTTGTAGGTTCGTTCGGAG
CAGAAACCAATCCTATTTTGGATTGGAATGTGCTTGATGCGAGTTTTATG
TTTTTCCTCCAAGGTGACTTTTTGTTGATTTGACTTGAGTTGAAGGTTGG
TGAAGTGAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1857:7717..15275-

>mRNA_Ecto-sp13_S_contig1857.5813.1 ID=mRNA_Ecto-sp13_S_contig1857.5813.1|Name=mRNA_Ecto-sp13_S_contig1857.5813.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=825bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1857:7717..15275- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCTGGGCGGCCGTGTGGACCCCTCTGTGGATTGCCGATAGCATCGG
GTTGATGTTCTTCGTGTTTCTAGTGAGCTGGGGACCTATCAGGGCCCCGG
CCGAGTGGCAGGGCGAGTGGCGAGACCCTTACCCGATGTCGATGAGGGTG
CTTGCGCTCGTGAAATGGGGGTTGCTCGTTTTGTTTCAGGTAACGTTAGT
TCTTAGGTTGGATCGCCACATCAGCTGGTCTTGGGAGGAAGTCTTGGCGC
CGCTCATGGCGTGGGTCTGTCTGCGGATTGTTGGAGAGCTGTATAGGATT
GTGCTTCAGACGAAGCGGCTGTTTGTGGGCAGAGTCATCGCCGCGATCAA
GGCGATTGGCGAGGCGGCCATGCTGTTCCTTCAAGTGTTGTTCCTCATGT
GGAGACTCGACGGCGAGGTGGACTGGAACTGGTGGGTGGTATTCATCCCC
ACATGGCTCCTCCACGCCGGGCAGCTGTTCACCTGGTGTACGAACCAAGC
CCTGGCGATGTCCCTCGCCCGGGGCCTGGAGGACCACGAAGGCTCAACGG
AGGAGCAACGTAGGAAGCTGCTGGAGGCATCCGTCCTGATGGACAATGCC
AAGCACTCCCGGAAGTTGTTAGGGGGAACCCTAGTGACGAGCGTGCTGGC
GGTCTACCTGGTCGCTGGCGCAGACTACTCGGCTTTCATCGTCTTCCTGC
CGCAGTTCTTTTCCGCCATCTGGTTCACTTTCGCGGTGACGTGCCTCGTC
TGCTTCGCCGAGCGACGGGCCCGACAGGAAGAGGCCGATGGGGCTGAAGG
GGAGGGTTTCAACACCGACGTGTGA
back to top