mRNA_Ecto-sp13_S_contig18563.5809.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18563.5809.1
Unique NamemRNA_Ecto-sp13_S_contig18563.5809.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18563.5809.1 vs. uniprot
Match: D8LPN6_ECTSI (GDT1 family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPN6_ECTSI)

HSP 1 Score: 228 bits (581), Expect = 1.920e-73
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 1 
Query:    1 RLTSSGFFQAFSLVFVSEIGDKTFFIAALLAAKTSRLISFAGSVGALAVMTVLAVLLGLAFHSVPSVFTSGLPLDDIIAAAAFLYFGINTLKDAYALPDDSNQGIEEERAEAEESVKELEGKKTVW 378
            RLTSSGFFQAFSLVFVSEIGDKTFFIAALLAAKTSRLISFAGSVGALAVMTVLAVLLGLAFHSVPSVFTSGLPLDDIIAAAAFLYFGINTLKDAYALPDDSNQGIEEERAEAEESVKELEGKKTVW
Sbjct:  134 RLTSSGFFQAFSLVFVSEIGDKTFFIAALLAAKTSRLISFAGSVGALAVMTVLAVLLGLAFHSVPSVFTSGLPLDDIIAAAAFLYFGINTLKDAYALPDDSNQGIEEERAEAEESVKELEGKKTVW 259
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BLAST of mRNA_Ecto-sp13_S_contig18563.5809.1 vs. uniprot
Match: A0A6H5L6M0_9PHAE (GDT1 family protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6M0_9PHAE)

HSP 1 Score: 228 bits (581), Expect = 2.540e-72
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 1 
Query:    1 RLTSSGFFQAFSLVFVSEIGDKTFFIAALLAAKTSRLISFAGSVGALAVMTVLAVLLGLAFHSVPSVFTSGLPLDDIIAAAAFLYFGINTLKDAYALPDDSNQGIEEERAEAEESVKELEGKKTVW 378
            RLTSSGFFQAFSLVFVSEIGDKTFFIAALLAAKTSRLISFAGSVGALAVMTVLAVLLGLAFHSVPSVFTSGLPLDDIIAAAAFLYFGINTLKDAYALPDDSNQGIEEERAEAEESVKELEGKKTVW
Sbjct:  133 RLTSSGFFQAFSLVFVSEIGDKTFFIAALLAAKTSRLISFAGSVGALAVMTVLAVLLGLAFHSVPSVFTSGLPLDDIIAAAAFLYFGINTLKDAYALPDDSNQGIEEERAEAEESVKELEGKKTVW 258
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BLAST of mRNA_Ecto-sp13_S_contig18563.5809.1 vs. uniprot
Match: A0A836CPU7_9STRA (GDT1 family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPU7_9STRA)

HSP 1 Score: 149 bits (376), Expect = 2.110e-41
Identity = 80/108 (74.07%), Postives = 92/108 (85.19%), Query Frame = 1 
Query:    7 TSSGFFQAFSLVFVSEIGDKTFFIAALLAAKTSRLISFAGSVGALAVMTVLAVLLGLAFHSVPSVFTSGLPLDDIIAAAAFLYFGINTLKDAYALPDDSNQGIEEERA 330
            TS+GF QAFSLVFVSEIGDKTFFIA LLAAKTSRLISFAGS+ AL+VMTVL+ L+G+AFHSVPS  T+G+P DD IA AAFLYFG+ TL+DA  +PDD N G+E E A
Sbjct:  138 TSNGFVQAFSLVFVSEIGDKTFFIAGLLAAKTSRLISFAGSIAALSVMTVLSCLIGVAFHSVPSTLTNGIPFDDYIAVAAFLYFGLVTLRDASQIPDDDNSGMEAEAA 245
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BLAST of mRNA_Ecto-sp13_S_contig18563.5809.1 vs. uniprot
Match: A0A7S2U7L4_9STRA (GDT1 family protein n=2 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U7L4_9STRA)

HSP 1 Score: 139 bits (349), Expect = 2.950e-37
Identity = 75/115 (65.22%), Postives = 94/115 (81.74%), Query Frame = 1 
Query:    4 LTSSGFFQAFSLVFVSEIGDKTFFIAALLAAKTSRLISFAGSVGALAVMTVLAVLLGLAFHSVPSVFTSGLPLDDIIAAAAFLYFGINTLKDAYALPDDSNQGIEEERAEAEESV 348
            L+ +GF+QAFSLVFVSEIGDKTFFIA LLA KTSRLISF GS+GALAVMT+++VL+G  FH+VPS  + GLPLDDI A AAF +FGI TLK+A  + ++    ++EE A+AEE+V
Sbjct:  159 LSQTGFYQAFSLVFVSEIGDKTFFIAGLLAMKTSRLISFIGSIGALAVMTIISVLIGQIFHAVPSGLSQGLPLDDIAAVAAFAFFGIKTLKEAIEMDEEGVSAMDEEFADAEEAV 273
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BLAST of mRNA_Ecto-sp13_S_contig18563.5809.1 vs. uniprot
Match: W7TMF8_9STRA (GDT1 family protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TMF8_9STRA)

HSP 1 Score: 138 bits (348), Expect = 4.930e-37
Identity = 75/128 (58.59%), Postives = 97/128 (75.78%), Query Frame = 1 
Query:    1 RLTSSGFFQAFSLVFVSEIGDKTFFIAALLAAKTSRLISFAGSVGALAVMTVLAVLLGLAFHSVPSVFTSGLPLDDIIAAAAFLYFGINTLKDAYALPDDSNQGIEEERAEAEESVKELEG--KKTVW 378
            +L +SGF QAFSLVFVSEIGDKTFFIA LLA KTSRLISF GS+ AL+VMT+++VL+G AFH++P     G   D  +A AAF YFG+ TLKD+Y + D  + G++EERAEAE++V+E     ++T W
Sbjct:  167 KLAASGFLQAFSLVFVSEIGDKTFFIAGLLAMKTSRLISFTGSMAALSVMTIISVLIGQAFHAIPQGLGGGFKFDQWVAVAAFSYFGLKTLKDSYDMADGDSSGVDEERAEAEKAVQESSAPERRTPW 294
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BLAST of mRNA_Ecto-sp13_S_contig18563.5809.1 vs. uniprot
Match: A0A8J6C509_DIALT (GDT1 family protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C509_DIALT)

HSP 1 Score: 132 bits (331), Expect = 5.630e-35
Identity = 70/125 (56.00%), Postives = 94/125 (75.20%), Query Frame = 1 
Query:    4 LTSSGFFQAFSLVFVSEIGDKTFFIAALLAAKTSRLISFAGSVGALAVMTVLAVLLGLAFHSVPSVFTSGLPLDDIIAAAAFLYFGINTLKDAYALPDDSNQGIEEERAEAEESVKELEGKKTVW 378
            L  S FFQA SL+FVS++GDKTFFIA +LAAKTSRL++F G+ GALAVMTV++V +G  FH+VP+ FT G+P+DDIIA A+F YFG+ +L DA A+ D  + G+  E+ EAEE +  +  K+  W
Sbjct:  108 LLDSPFFQALSLIFVSDLGDKTFFIATILAAKTSRLLTFVGAAGALAVMTVISVAIGQVFHAVPTGFTRGIPIDDIIAIASFSYFGLKSLADAAAIEDGDDSGMAAEQREAEEELAAIGDKRGRW 232
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BLAST of mRNA_Ecto-sp13_S_contig18563.5809.1 vs. uniprot
Match: A0A7S1FYG6_9STRA (GDT1 family protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FYG6_9STRA)

HSP 1 Score: 132 bits (331), Expect = 1.130e-34
Identity = 74/122 (60.66%), Postives = 95/122 (77.87%), Query Frame = 1 
Query:   10 SSGFFQAFSLVFVSEIGDKTFFIAALLAAKTSRLISFAGSVGALAVMTVLAVLLGLAFHSVPSVFTSGLPLDDIIAAAAFLYFGINTLKDAYALPDDSNQGIEEERAEAEESVKELEGKKTV 375
            S+GF+QAFSLVF+SEIGDKTFFIA LLA KTS+ +SF GS+GALAVMTV++ +LG  FH+VPS  T GLPLDD+ A  AF +FG  TLKD+Y L +D    ++EE A+AE++V   EG +T+
Sbjct:  153 STGFYQAFSLVFLSEIGDKTFFIAGLLAMKTSKFVSFVGSLGALAVMTVISCILGQIFHAVPSGITQGLPLDDVAAVVAFAFFGFKTLKDSYDL-EDGESVMDEELADAEDAV---EGSETI 270
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BLAST of mRNA_Ecto-sp13_S_contig18563.5809.1 vs. uniprot
Match: A0A7S1CXU9_CYCTE (GDT1 family protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CXU9_CYCTE)

HSP 1 Score: 130 bits (328), Expect = 1.700e-34
Identity = 74/124 (59.68%), Postives = 96/124 (77.42%), Query Frame = 1 
Query:    4 LTSSGFFQAFSLVFVSEIGDKTFFIAALLAAKTSRLISFAGSVGALAVMTVLAVLLGLAFHSVPSVFTSGLPLDDIIAAAAFLYFGINTLKDAYALPDDSNQGIEEERAEAEESVKELEGKKTV 375
            LT +GF+QAFSLVF+SEIGDKTFFIA LLA KTSR++S+ GS+GALAVMT+L+VL+G  FH+VP+    G+PLDD+ A  AF +FG+ TLK+A  +  D +  ++EE AEAEE+V   EG  TV
Sbjct:  120 LTETGFYQAFSLVFLSEIGDKTFFIAGLLAMKTSRVVSYLGSMGALAVMTILSVLIGQIFHAVPAGIAQGIPLDDVAAVLAFAFFGLKTLKEAIEMDSDGST-MDEEFAEAEETV---EGSNTV 239
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BLAST of mRNA_Ecto-sp13_S_contig18563.5809.1 vs. uniprot
Match: A0A7S2HML6_9STRA (GDT1 family protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HML6_9STRA)

HSP 1 Score: 129 bits (325), Expect = 8.010e-34
Identity = 71/128 (55.47%), Postives = 97/128 (75.78%), Query Frame = 1 
Query:    1 RLTSSGFFQAFSLVFVSEIGDKTFFIAALLAAKTSRLISFAGSVGALAVMTVLAVLLGLAFHSVPSVFTSGLPLDDIIAAAAFLYFGINTLKDAYALPDDSNQGIEEERAEAEESVKELEG--KKTVW 378
            ++  +GF+QAFSLVFVSEIGDKTFFIA LLA KTSR +S  GSVGALAVMT+++VL+G  FH+VPS    G+PLDD+ A  AF +FG  TLK+++ + ++    ++EE AEAEE+V+E +   ++T W
Sbjct:  146 KVAETGFYQAFSLVFVSEIGDKTFFIAGLLAMKTSRFVSLVGSVGALAVMTIISVLIGQIFHAVPSGIAQGIPLDDVAAVLAFAFFGFKTLKESFDM-EEGESVMDEELAEAEETVEESDTIRQRTAW 272
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BLAST of mRNA_Ecto-sp13_S_contig18563.5809.1 vs. uniprot
Match: A0A7S2K988_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K988_9STRA)

HSP 1 Score: 130 bits (327), Expect = 8.900e-34
Identity = 72/125 (57.60%), Postives = 95/125 (76.00%), Query Frame = 1 
Query:    1 RLTSSGFFQAFSLVFVSEIGDKTFFIAALLAAKTSRLISFAGSVGALAVMTVLAVLLGLAFHSVPSVFTSGLPLDDIIAAAAFLYFGINTLKDAYALPDDSNQGIEEERAEAEESVKELEGKKTV 375
            R + SGF+QAFSLVF+SEIGDKTFFIA LLA KTSRL+SF GS+GALA MTVL+VL+G  FH+VP+    G+PLDD+ A  AF +FG+ TLK+A  +  ++   ++EE  EA+E+V   EG +T+
Sbjct:  190 RFSESGFYQAFSLVFLSEIGDKTFFIAGLLAMKTSRLVSFIGSMGALAAMTVLSVLIGQIFHAVPAGIAQGIPLDDVAAVLAFTFFGLKTLKEASDMDPEAGSVMDEEFEEAQEAV---EGSQTI 311
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18563.5809.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPN6_ECTSI1.920e-73100.00GDT1 family protein n=1 Tax=Ectocarpus siliculosus... [more]
A0A6H5L6M0_9PHAE2.540e-72100.00GDT1 family protein n=1 Tax=Ectocarpus sp. CCAP 13... [more]
A0A836CPU7_9STRA2.110e-4174.07GDT1 family protein n=1 Tax=Tribonema minus TaxID=... [more]
A0A7S2U7L4_9STRA2.950e-3765.22GDT1 family protein n=2 Tax=Attheya septentrionali... [more]
W7TMF8_9STRA4.930e-3758.59GDT1 family protein n=2 Tax=Monodopsidaceae TaxID=... [more]
A0A8J6C509_DIALT5.630e-3556.00GDT1 family protein n=1 Tax=Diacronema lutheri Tax... [more]
A0A7S1FYG6_9STRA1.130e-3460.66GDT1 family protein n=1 Tax=Corethron hystrix TaxI... [more]
A0A7S1CXU9_CYCTE1.700e-3459.68GDT1 family protein n=1 Tax=Cyclophora tenuis TaxI... [more]
A0A7S2HML6_9STRA8.010e-3455.47GDT1 family protein n=1 Tax=Helicotheca tamesis Ta... [more]
A0A7S2K988_9STRA8.900e-3457.60Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18563contigEcto-sp13_S_contig18563:1341..1721 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score230.3
Seed ortholog evalue4.9e-58
Seed eggNOG ortholog2880.D8LPN6
Model size381
Hectar predicted targeting categorysignal anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009526,GO:0009528,GO:0009536,GO:0009706,GO:0009941,GO:0016020,GO:0019866,GO:0031090,GO:0031967,GO:0031969,GO:0031975,GO:0042170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464
Exons1
EggNOG free text desc.Golgi calcium ion transport
EggNOG OGsCOG2119@1,KOG2881@2759
Cds size381
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462952.922261-CDS-Ecto-sp13_S_contig18563:1340..17211681462952.922261-CDS-Ecto-sp13_S_contig18563:1340..1721Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18563 1341..1721 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18563.5809.1prot_Ecto-sp13_S_contig18563.5809.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18563 1341..1721 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18563.5809.1

>prot_Ecto-sp13_S_contig18563.5809.1 ID=prot_Ecto-sp13_S_contig18563.5809.1|Name=mRNA_Ecto-sp13_S_contig18563.5809.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=127bp
RLTSSGFFQAFSLVFVSEIGDKTFFIAALLAAKTSRLISFAGSVGALAVM
TVLAVLLGLAFHSVPSVFTSGLPLDDIIAAAAFLYFGINTLKDAYALPDD
SNQGIEEERAEAEESVKELEGKKTVW*
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mRNA from alignment at Ecto-sp13_S_contig18563:1341..1721-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18563.5809.1 ID=mRNA_Ecto-sp13_S_contig18563.5809.1|Name=mRNA_Ecto-sp13_S_contig18563.5809.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=381bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18563:1341..1721- (Ectocarpus species13 EcNAP12_S_4_19m)
AGACTAACTAGTTCGGGTTTTTTCCAGGCCTTTTCACTCGTGTTTGTCTC
CGAAATCGGCGACAAAACCTTCTTCATTGCCGCTCTTTTGGCGGCGAAAA
CAAGCCGCCTCATCTCCTTTGCGGGCTCGGTCGGAGCACTGGCCGTGATG
ACGGTGCTCGCTGTGCTCTTGGGGTTGGCGTTTCACTCCGTGCCGTCCGT
GTTCACGTCTGGCCTTCCTCTGGACGACATCATAGCGGCGGCAGCTTTTC
TCTACTTCGGAATCAACACGTTGAAAGATGCCTACGCGCTGCCGGACGAT
TCCAACCAAGGTATTGAGGAAGAGCGGGCCGAAGCCGAAGAGAGCGTCAA
GGAGCTTGAAGGGAAGAAAACTGTTTGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18563:1341..1721-

>mRNA_Ecto-sp13_S_contig18563.5809.1 ID=mRNA_Ecto-sp13_S_contig18563.5809.1|Name=mRNA_Ecto-sp13_S_contig18563.5809.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=381bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18563:1341..1721- (Ectocarpus species13 EcNAP12_S_4_19m)
AGACTAACTAGTTCGGGTTTTTTCCAGGCCTTTTCACTCGTGTTTGTCTC
CGAAATCGGCGACAAAACCTTCTTCATTGCCGCTCTTTTGGCGGCGAAAA
CAAGCCGCCTCATCTCCTTTGCGGGCTCGGTCGGAGCACTGGCCGTGATG
ACGGTGCTCGCTGTGCTCTTGGGGTTGGCGTTTCACTCCGTGCCGTCCGT
GTTCACGTCTGGCCTTCCTCTGGACGACATCATAGCGGCGGCAGCTTTTC
TCTACTTCGGAATCAACACGTTGAAAGATGCCTACGCGCTGCCGGACGAT
TCCAACCAAGGTATTGAGGAAGAGCGGGCCGAAGCCGAAGAGAGCGTCAA
GGAGCTTGAAGGGAAGAAAACTGTTTGGTGA
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