prot_Ecto-sp13_S_contig18563.5809.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig18563.5809.1
Unique Name	prot_Ecto-sp13_S_contig18563.5809.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	127

Homology

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BLAST of mRNA_Ecto-sp13_S_contig18563.5809.1 vs. uniprot
Match: D8LPN6_ECTSI (GDT1 family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPN6_ECTSI)

HSP 1 Score: 228 bits (581), Expect = 1.920e-73
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0

Query:    1 RLTSSGFFQAFSLVFVSEIGDKTFFIAALLAAKTSRLISFAGSVGALAVMTVLAVLLGLAFHSVPSVFTSGLPLDDIIAAAAFLYFGINTLKDAYALPDDSNQGIEEERAEAEESVKELEGKKTVW 126
            RLTSSGFFQAFSLVFVSEIGDKTFFIAALLAAKTSRLISFAGSVGALAVMTVLAVLLGLAFHSVPSVFTSGLPLDDIIAAAAFLYFGINTLKDAYALPDDSNQGIEEERAEAEESVKELEGKKTVW
Sbjct:  134 RLTSSGFFQAFSLVFVSEIGDKTFFIAALLAAKTSRLISFAGSVGALAVMTVLAVLLGLAFHSVPSVFTSGLPLDDIIAAAAFLYFGINTLKDAYALPDDSNQGIEEERAEAEESVKELEGKKTVW 259

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BLAST of mRNA_Ecto-sp13_S_contig18563.5809.1 vs. uniprot
Match: A0A6H5L6M0_9PHAE (GDT1 family protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6M0_9PHAE)

HSP 1 Score: 228 bits (581), Expect = 2.540e-72
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0

Query:    1 RLTSSGFFQAFSLVFVSEIGDKTFFIAALLAAKTSRLISFAGSVGALAVMTVLAVLLGLAFHSVPSVFTSGLPLDDIIAAAAFLYFGINTLKDAYALPDDSNQGIEEERAEAEESVKELEGKKTVW 126
            RLTSSGFFQAFSLVFVSEIGDKTFFIAALLAAKTSRLISFAGSVGALAVMTVLAVLLGLAFHSVPSVFTSGLPLDDIIAAAAFLYFGINTLKDAYALPDDSNQGIEEERAEAEESVKELEGKKTVW
Sbjct:  133 RLTSSGFFQAFSLVFVSEIGDKTFFIAALLAAKTSRLISFAGSVGALAVMTVLAVLLGLAFHSVPSVFTSGLPLDDIIAAAAFLYFGINTLKDAYALPDDSNQGIEEERAEAEESVKELEGKKTVW 258

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BLAST of mRNA_Ecto-sp13_S_contig18563.5809.1 vs. uniprot
Match: A0A836CPU7_9STRA (GDT1 family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPU7_9STRA)

HSP 1 Score: 149 bits (376), Expect = 2.110e-41
Identity = 80/108 (74.07%), Postives = 92/108 (85.19%), Query Frame = 0

Query:    3 TSSGFFQAFSLVFVSEIGDKTFFIAALLAAKTSRLISFAGSVGALAVMTVLAVLLGLAFHSVPSVFTSGLPLDDIIAAAAFLYFGINTLKDAYALPDDSNQGIEEERA 110
            TS+GF QAFSLVFVSEIGDKTFFIA LLAAKTSRLISFAGS+ AL+VMTVL+ L+G+AFHSVPS  T+G+P DD IA AAFLYFG+ TL+DA  +PDD N G+E E A
Sbjct:  138 TSNGFVQAFSLVFVSEIGDKTFFIAGLLAAKTSRLISFAGSIAALSVMTVLSCLIGVAFHSVPSTLTNGIPFDDYIAVAAFLYFGLVTLRDASQIPDDDNSGMEAEAA 245

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BLAST of mRNA_Ecto-sp13_S_contig18563.5809.1 vs. uniprot
Match: A0A7S2U7L4_9STRA (GDT1 family protein n=2 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U7L4_9STRA)

HSP 1 Score: 139 bits (349), Expect = 2.950e-37
Identity = 75/115 (65.22%), Postives = 94/115 (81.74%), Query Frame = 0

Query:    2 LTSSGFFQAFSLVFVSEIGDKTFFIAALLAAKTSRLISFAGSVGALAVMTVLAVLLGLAFHSVPSVFTSGLPLDDIIAAAAFLYFGINTLKDAYALPDDSNQGIEEERAEAEESV 116
            L+ +GF+QAFSLVFVSEIGDKTFFIA LLA KTSRLISF GS+GALAVMT+++VL+G  FH+VPS  + GLPLDDI A AAF +FGI TLK+A  + ++    ++EE A+AEE+V
Sbjct:  159 LSQTGFYQAFSLVFVSEIGDKTFFIAGLLAMKTSRLISFIGSIGALAVMTIISVLIGQIFHAVPSGLSQGLPLDDIAAVAAFAFFGIKTLKEAIEMDEEGVSAMDEEFADAEEAV 273

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BLAST of mRNA_Ecto-sp13_S_contig18563.5809.1 vs. uniprot
Match: W7TMF8_9STRA (GDT1 family protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TMF8_9STRA)

HSP 1 Score: 138 bits (348), Expect = 4.930e-37
Identity = 75/128 (58.59%), Postives = 97/128 (75.78%), Query Frame = 0

Query:    1 RLTSSGFFQAFSLVFVSEIGDKTFFIAALLAAKTSRLISFAGSVGALAVMTVLAVLLGLAFHSVPSVFTSGLPLDDIIAAAAFLYFGINTLKDAYALPDDSNQGIEEERAEAEESVKELEG--KKTVW 126
            +L +SGF QAFSLVFVSEIGDKTFFIA LLA KTSRLISF GS+ AL+VMT+++VL+G AFH++P     G   D  +A AAF YFG+ TLKD+Y + D  + G++EERAEAE++V+E     ++T W
Sbjct:  167 KLAASGFLQAFSLVFVSEIGDKTFFIAGLLAMKTSRLISFTGSMAALSVMTIISVLIGQAFHAIPQGLGGGFKFDQWVAVAAFSYFGLKTLKDSYDMADGDSSGVDEERAEAEKAVQESSAPERRTPW 294

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BLAST of mRNA_Ecto-sp13_S_contig18563.5809.1 vs. uniprot
Match: A0A8J6C509_DIALT (GDT1 family protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C509_DIALT)

HSP 1 Score: 132 bits (331), Expect = 5.630e-35
Identity = 70/125 (56.00%), Postives = 94/125 (75.20%), Query Frame = 0

Query:    2 LTSSGFFQAFSLVFVSEIGDKTFFIAALLAAKTSRLISFAGSVGALAVMTVLAVLLGLAFHSVPSVFTSGLPLDDIIAAAAFLYFGINTLKDAYALPDDSNQGIEEERAEAEESVKELEGKKTVW 126
            L  S FFQA SL+FVS++GDKTFFIA +LAAKTSRL++F G+ GALAVMTV++V +G  FH+VP+ FT G+P+DDIIA A+F YFG+ +L DA A+ D  + G+  E+ EAEE +  +  K+  W
Sbjct:  108 LLDSPFFQALSLIFVSDLGDKTFFIATILAAKTSRLLTFVGAAGALAVMTVISVAIGQVFHAVPTGFTRGIPIDDIIAIASFSYFGLKSLADAAAIEDGDDSGMAAEQREAEEELAAIGDKRGRW 232

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BLAST of mRNA_Ecto-sp13_S_contig18563.5809.1 vs. uniprot
Match: A0A7S1FYG6_9STRA (GDT1 family protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FYG6_9STRA)

HSP 1 Score: 132 bits (331), Expect = 1.130e-34
Identity = 74/122 (60.66%), Postives = 95/122 (77.87%), Query Frame = 0

Query:    4 SSGFFQAFSLVFVSEIGDKTFFIAALLAAKTSRLISFAGSVGALAVMTVLAVLLGLAFHSVPSVFTSGLPLDDIIAAAAFLYFGINTLKDAYALPDDSNQGIEEERAEAEESVKELEGKKTV 125
            S+GF+QAFSLVF+SEIGDKTFFIA LLA KTS+ +SF GS+GALAVMTV++ +LG  FH+VPS  T GLPLDD+ A  AF +FG  TLKD+Y L +D    ++EE A+AE++V   EG +T+
Sbjct:  153 STGFYQAFSLVFLSEIGDKTFFIAGLLAMKTSKFVSFVGSLGALAVMTVISCILGQIFHAVPSGITQGLPLDDVAAVVAFAFFGFKTLKDSYDL-EDGESVMDEELADAEDAV---EGSETI 270

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BLAST of mRNA_Ecto-sp13_S_contig18563.5809.1 vs. uniprot
Match: A0A7S1CXU9_CYCTE (GDT1 family protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CXU9_CYCTE)

HSP 1 Score: 130 bits (328), Expect = 1.700e-34
Identity = 74/124 (59.68%), Postives = 96/124 (77.42%), Query Frame = 0

Query:    2 LTSSGFFQAFSLVFVSEIGDKTFFIAALLAAKTSRLISFAGSVGALAVMTVLAVLLGLAFHSVPSVFTSGLPLDDIIAAAAFLYFGINTLKDAYALPDDSNQGIEEERAEAEESVKELEGKKTV 125
            LT +GF+QAFSLVF+SEIGDKTFFIA LLA KTSR++S+ GS+GALAVMT+L+VL+G  FH+VP+    G+PLDD+ A  AF +FG+ TLK+A  +  D +  ++EE AEAEE+V   EG  TV
Sbjct:  120 LTETGFYQAFSLVFLSEIGDKTFFIAGLLAMKTSRVVSYLGSMGALAVMTILSVLIGQIFHAVPAGIAQGIPLDDVAAVLAFAFFGLKTLKEAIEMDSDGST-MDEEFAEAEETV---EGSNTV 239

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BLAST of mRNA_Ecto-sp13_S_contig18563.5809.1 vs. uniprot
Match: A0A7S2HML6_9STRA (GDT1 family protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HML6_9STRA)

HSP 1 Score: 129 bits (325), Expect = 8.010e-34
Identity = 71/128 (55.47%), Postives = 97/128 (75.78%), Query Frame = 0

Query:    1 RLTSSGFFQAFSLVFVSEIGDKTFFIAALLAAKTSRLISFAGSVGALAVMTVLAVLLGLAFHSVPSVFTSGLPLDDIIAAAAFLYFGINTLKDAYALPDDSNQGIEEERAEAEESVKELEG--KKTVW 126
            ++  +GF+QAFSLVFVSEIGDKTFFIA LLA KTSR +S  GSVGALAVMT+++VL+G  FH+VPS    G+PLDD+ A  AF +FG  TLK+++ + ++    ++EE AEAEE+V+E +   ++T W
Sbjct:  146 KVAETGFYQAFSLVFVSEIGDKTFFIAGLLAMKTSRFVSLVGSVGALAVMTIISVLIGQIFHAVPSGIAQGIPLDDVAAVLAFAFFGFKTLKESFDM-EEGESVMDEELAEAEETVEESDTIRQRTAW 272

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BLAST of mRNA_Ecto-sp13_S_contig18563.5809.1 vs. uniprot
Match: A0A7S2K988_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K988_9STRA)

HSP 1 Score: 130 bits (327), Expect = 8.900e-34
Identity = 72/125 (57.60%), Postives = 95/125 (76.00%), Query Frame = 0

Query:    1 RLTSSGFFQAFSLVFVSEIGDKTFFIAALLAAKTSRLISFAGSVGALAVMTVLAVLLGLAFHSVPSVFTSGLPLDDIIAAAAFLYFGINTLKDAYALPDDSNQGIEEERAEAEESVKELEGKKTV 125
            R + SGF+QAFSLVF+SEIGDKTFFIA LLA KTSRL+SF GS+GALA MTVL+VL+G  FH+VP+    G+PLDD+ A  AF +FG+ TLK+A  +  ++   ++EE  EA+E+V   EG +T+
Sbjct:  190 RFSESGFYQAFSLVFLSEIGDKTFFIAGLLAMKTSRLVSFIGSMGALAAMTVLSVLIGQIFHAVPAGIAQGIPLDDVAAVLAFTFFGLKTLKEASDMDPEAGSVMDEEFEEAQEAV---EGSQTI 311

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig18563.5809.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig18563.5809.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LPN6_ECTSI	1.920e-73	100.00	GDT1 family protein n=1 Tax=Ectocarpus siliculosus...	[more]
A0A6H5L6M0_9PHAE	2.540e-72	100.00	GDT1 family protein n=1 Tax=Ectocarpus sp. CCAP 13...	[more]
A0A836CPU7_9STRA	2.110e-41	74.07	GDT1 family protein n=1 Tax=Tribonema minus TaxID=...	[more]
A0A7S2U7L4_9STRA	2.950e-37	65.22	GDT1 family protein n=2 Tax=Attheya septentrionali...	[more]
W7TMF8_9STRA	4.930e-37	58.59	GDT1 family protein n=2 Tax=Monodopsidaceae TaxID=...	[more]
A0A8J6C509_DIALT	5.630e-35	56.00	GDT1 family protein n=1 Tax=Diacronema lutheri Tax...	[more]
A0A7S1FYG6_9STRA	1.130e-34	60.66	GDT1 family protein n=1 Tax=Corethron hystrix TaxI...	[more]
A0A7S1CXU9_CYCTE	1.700e-34	59.68	GDT1 family protein n=1 Tax=Cyclophora tenuis TaxI...	[more]
A0A7S2HML6_9STRA	8.010e-34	55.47	GDT1 family protein n=1 Tax=Helicotheca tamesis Ta...	[more]
A0A7S2K988_9STRA	8.900e-34	57.60	Hypothetical protein n=1 Tax=Leptocylindrus danicu...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 102..126
None	No IPR available	PANTHER	PTHR12608:SF6	PROTEIN PAM71, CHLOROPLASTIC	coord: 4..123
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 31..36
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 6..30
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 62..66
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 37..61
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 67..88
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 89..126
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..5
None	No IPR available	TMHMM	TMhelix		coord: 66..88
None	No IPR available	TMHMM	TMhelix		coord: 39..61
None	No IPR available	TMHMM	TMhelix		coord: 10..32
IPR001727	Gdt1 family	PFAM	PF01169	UPF0016	coord: 9..87 e-value: 7.8E-19 score: 67.8
IPR001727	Gdt1 family	PANTHER	PTHR12608	TRANSMEMBRANE PROTEIN HTP-1 RELATED	coord: 4..123
IPR001727	Gdt1 family	PROSITE	PS01214	UPF0016	coord: 18..27

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig18563	contig	Ecto-sp13_S_contig18563:1341..1721 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig18563.5809.1	mRNA_Ecto-sp13_S_contig18563.5809.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig18563 1341..1721 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig18563.5809.1 ID=prot_Ecto-sp13_S_contig18563.5809.1|Name=mRNA_Ecto-sp13_S_contig18563.5809.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=127bp
RLTSSGFFQAFSLVFVSEIGDKTFFIAALLAAKTSRLISFAGSVGALAVM
TVLAVLLGLAFHSVPSVFTSGLPLDDIIAAAAFLYFGINTLKDAYALPDD
SNQGIEEERAEAEESVKELEGKKTVW*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001727	Gdt1