prot_Ecto-sp13_S_contig1856.5804.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig1856.5804.1
Unique Name	prot_Ecto-sp13_S_contig1856.5804.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	217

Homology

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BLAST of mRNA_Ecto-sp13_S_contig1856.5804.1 vs. uniprot
Match: D7FPU8_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPU8_ECTSI)

HSP 1 Score: 424 bits (1091), Expect = 3.750e-150
Identity = 213/216 (98.61%), Postives = 214/216 (99.07%), Query Frame = 0

Query:    1 MKMEIGALALTLATTTAFVAPSAFHGSQIARPQQATSATMTKMAVNDMLGADVETDGVFDPLGYGKDDASLFRRRAVELKHGRVAMLAVTGYLFAEQWHPLYDGKLSPGLKALGELPLAAWVQILGAIAVVELTVGKQDYENKAPGELGNFGQAWNPYPDNPVAFSKLQLKELKNGRLAMLAIMGEMVQEKLTGQTVIEQLASGHISPFGDGQGAF 216
            MKMEIGALALTLATTTAFVAPSAFHGSQIARPQQATSATMTKMAVNDMLGADVETDGVFDPLGYGKDDASLFRRRAVELKHGRVAMLAVTGYLFAEQWHPLYDGKLSPGLKALGELPLAAWVQILGAIAVVELTVGKQDYENKAPGELGNFGQAWNPYPDNPVAFSKLQLKELKNGRLAMLAIMGEMVQEKLTGQT IEQL SGH+SPFGDGQGAF
Sbjct:    1 MKMEIGALALTLATTTAFVAPSAFHGSQIARPQQATSATMTKMAVNDMLGADVETDGVFDPLGYGKDDASLFRRRAVELKHGRVAMLAVTGYLFAEQWHPLYDGKLSPGLKALGELPLAAWVQILGAIAVVELTVGKQDYENKAPGELGNFGQAWNPYPDNPVAFSKLQLKELKNGRLAMLAIMGEMVQEKLTGQTAIEQLTSGHLSPFGDGQGAF 216

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BLAST of mRNA_Ecto-sp13_S_contig1856.5804.1 vs. uniprot
Match: A0A835ZQ88_9STRA (Light harvesting complex protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZQ88_9STRA)

HSP 1 Score: 266 bits (679), Expect = 1.830e-87
Identity = 136/206 (66.02%), Postives = 169/206 (82.04%), Query Frame = 0

Query:   11 TLATTTAFVAPSAFHGSQIARPQQATSATMTKMAVNDMLGADVETDGVFDPLGYGKDDASLFRRRAVELKHGRVAMLAVTGYLFAEQWHPLYDGKLSPGLKALGELPLAAWVQILGAIAVVELTVGKQDYENKAPGELGNFGQAWNPYPDNPVAFSKLQLKELKNGRLAMLAIMGEMVQEKLTGQTVIEQLASGHISPFGDGQGAF 216
            +LA   AF AP AF G+++A P+ ++ A ++ M+VND+LGADVET GV+DPLG+ KD+A+LFRRR VELKHGR+ MLA  GYL AE +HPLYDGK+  GL A+ ++P+A W+QI+ AI VVELTVGKQD+ENKAPG+LG FG  +NP+P++P  F+ LQLKELKNGRLAM+ IMG MVQE LTGQT + QLASGHISPFGDGQGAF
Sbjct:   11 SLAGAAAF-AP-AFMGAKVAAPRVSSKAVVS-MSVNDLLGADVETKGVWDPLGFSKDEAALFRRRVVELKHGRICMLATLGYLVAEVYHPLYDGKIPAGLGAISQVPMAGWLQIIAAIGVVELTVGKQDFENKAPGDLG-FGLGFNPFPNDPEKFAALQLKELKNGRLAMMGIMGMMVQEGLTGQTPLAQLASGHISPFGDGQGAF 212

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BLAST of mRNA_Ecto-sp13_S_contig1856.5804.1 vs. uniprot
Match: A0A0G4EVU7_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EVU7_VITBC)

HSP 1 Score: 254 bits (648), Expect = 8.550e-83
Identity = 128/214 (59.81%), Postives = 162/214 (75.70%), Query Frame = 0

Query:    3 MEIGALALTLATTTAFVAPSAFHGSQIARPQQATSATMTKMAVNDMLGADVETDGVFDPLGYGKDDASLFRRRAVELKHGRVAMLAVTGYLFAEQWHPLYDGKLSPGLKALGELPLAAWVQILGAIAVVELTVGKQDYENKAPGELGNFGQAWNPYPDNPVAFSKLQLKELKNGRLAMLAIMGEMVQEKLTGQTVIEQLASGHISPFGDGQGAF 216
            M++   A  +A  +AFV  +   G       Q+   T  +MAV DM+GADVET GV+DPLG+ KD++SL+R RAVELKHGRVAMLAV GY  AE WHPLYDGK+ PGLKA+ ++P A W+QIL  IA +EL++GKQD+EN+APG+LG FG   NP+ ++PV F+KLQLKE+KNGRLAM+AI G +VQE +TGQT ++QL  GHISPFGDGQG F
Sbjct:    2 MKLMVFAALIAAASAFVPSAPLRGLD---KLQSRDRTAPRMAVEDMIGADVETRGVWDPLGFSKDESSLYRYRAVELKHGRVAMLAVLGYFVAELWHPLYDGKVEPGLKAISQVPSAGWLQILATIAAIELSIGKQDFENRAPGDLG-FGI--NPFENDPVEFAKLQLKEIKNGRLAMIAIAGMLVQELVTGQTTLQQLREGHISPFGDGQGLF 209

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BLAST of mRNA_Ecto-sp13_S_contig1856.5804.1 vs. uniprot
Match: W7TFG9_9STRA (Light harvesting complex protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TFG9_9STRA)

HSP 1 Score: 245 bits (626), Expect = 1.650e-79
Identity = 126/206 (61.17%), Postives = 160/206 (77.67%), Query Frame = 0

Query:   11 TLATTTAFVAPSAFHGSQIARPQQATSATMTKMAVNDMLGADVETDGVFDPLGYGKDDASLFRRRAVELKHGRVAMLAVTGYLFAEQWHPLYDGKLSPGLKALGELPLAAWVQILGAIAVVELTVGKQDYENKAPGELGNFGQAWNPYPDNPVAFSKLQLKELKNGRLAMLAIMGEMVQEKLTGQTVIEQLASGHISPFGDGQGAF 216
            +LA  +AFV P+A        P+ + +  MT+MAVND+LG+DVET GV+DPL + KD+ SL+R RAVELKHGR+AMLAV G   +E +HPLYDGK+SPG+KA+GELP  AW+QIL  I V+ELTVGKQD ENKAPG+LG FG  +NP+ ++P  F++LQLKELKNGRLAML   G ++QE +TGQT  EQ+A+ H+SPFGDGQG F
Sbjct:   10 SLAVASAFV-PAA--------PKMSRTRGMTRMAVNDILGSDVETGGVWDPLNFSKDEGSLYRYRAVELKHGRLAMLAVLGLWVSEFYHPLYDGKISPGIKAIGELPGPAWLQILATIGVIELTVGKQDTENKAPGDLG-FGYNFNPFKNDPEKFAELQLKELKNGRLAMLGAAGILLQESITGQTCFEQIAAQHLSPFGDGQGFF 205

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BLAST of mRNA_Ecto-sp13_S_contig1856.5804.1 vs. uniprot
Match: A0A835ZAI4_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAI4_9STRA)

HSP 1 Score: 203 bits (517), Expect = 8.160e-63
Identity = 122/212 (57.55%), Postives = 145/212 (68.40%), Query Frame = 0

Query:   11 TLATTTAFVAPSAFHGSQIARPQQATSATMTKMAVNDMLGADVETDGVFDPLGYGKDDASLFRRRAVELKHGRVAMLAVTGYLFAEQWHPLYDGKLSPG------LKALGELPLAAWVQILGAIAVVELTVGKQDYENKAPGELGNFGQAWNPYPDNPVAFSKLQLKELKNGRLAMLAIMGEMVQEKLTGQTVIEQLASGHISPFGDGQGAF 216
            +LA   AF  PSAF G  +ARP   T A +T+M+V DM+G DVET G+FDPLG+ KD+ASLFRRRAVELKHGR+ MLA  G L     H L D   S        L+ L + P+AA +QIL AI ++ELT G QDY NKAPG+LG FG A+ P  D+    ++LQLKELKNGRLAM+ IMG +VQE LT Q  IEQL  GH SPFGDGQG F
Sbjct:   11 SLAGVAAFT-PSAFAGKALARPAARTHA-VTRMSVEDMVGIDVETGGLFDPLGFSKDEASLFRRRAVELKHGRICMLATFGVLVQTYVH-LPDAVFSNPRPIGALLQVLDQRPVAA-IQILLAIGLLELTAGAQDYANKAPGDLGRFGDAFKP--DDAGELAELQLKELKNGRLAMMGIMGMLVQEGLTKQGPIEQLLVGHTSPFGDGQGFF 216

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BLAST of mRNA_Ecto-sp13_S_contig1856.5804.1 vs. uniprot
Match: W7U405_9STRA (Light-harvesting protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U405_9STRA)

HSP 1 Score: 191 bits (485), Expect = 4.170e-58
Identity = 119/223 (53.36%), Postives = 147/223 (65.92%), Query Frame = 0

Query:    1 MKMEIGALALTLATTTAFV--APSAFHGSQIARPQQATSATMTKMAVNDMLGADVETDGVFDPLGYGKDDASLFRRRAVELKHGRVAMLAVTGYLFAEQWHPLYDGKLSPG-LKALGEL----PLAAWVQILGAIAVVELTVGKQDYENKAPGELGNFGQAWNPYPDNPVAFSKLQLKELKNGRLAMLAIMGEMVQEKLTGQTVIEQLASGHISPFGDGQGAF 216
            MK     LAL L  +TAF+  AP    G  +            +MAVN+M+G+DVET+GVFDPLG  KD+ASL+R R +ELKHGRVAMLA  G L    +H   +   +P  L AL ++    P+A W QI  AI  +ELT+GKQD  N+APG++G FG A+   PD+   F+ LQLKELKNGRLAM+AI+G+ VQEKLTGQ  IEQL  GH SPFGDGQGAF
Sbjct:    1 MKTAFAFLAL-LGVSTAFMPTAPRMTRGRSV------------RMAVNEMIGSDVETNGVFDPLGLAKDEASLYRSRLIELKHGRVAMLACLGTLVQSFYHLPDEVFSNPRPLAALAQVYSERPVAFW-QIFLAIGAIELTIGKQDTANRAPGDVG-FGAAF--IPDDAEDFAALQLKELKNGRLAMMAIIGQFVQEKLTGQGPIEQLLEGHFSPFGDGQGAF 206

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BLAST of mRNA_Ecto-sp13_S_contig1856.5804.1 vs. uniprot
Match: A0A7R9U311_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U311_9STRA)

HSP 1 Score: 189 bits (479), Expect = 3.270e-57
Identity = 94/170 (55.29%), Postives = 131/170 (77.06%), Query Frame = 0

Query:   44 AVNDMLGADVETDGVFDPLGYGKDDASLFRRRAVELKHGRVAMLAVTGYLFAEQ-WHPLYDGKLSPGLKALGELPLAAWVQILGAIAVVELTVGKQDYENKAPGELGNFGQAWNPYPDNPVAFSKLQLKELKNGRLAMLAIMGEMVQEKLTGQTVIEQLASGHISPFGDG 212
            AV+ ++GADVET+G +DPLG  K++ +L RRR VELKHGRVAMLAV G +  +  +HPL+DGK+  G+ A+ ++P A WVQIL AIA +EL  G  D E+K PG++  FG A+   P++PV + KLQL+ELK+GRLAM+AI+GE+VQE++TGQTV++QL  G+++PF  G
Sbjct:   36 AVDALVGADVETNGFWDPLGLAKNEEALGRRRHVELKHGRVAMLAVLGNIVTDAGYHPLFDGKIPAGIGAISKVPTAGWVQILFAIAAIELRYGGYD-ESKTPGDIAGFGSAF--IPEDPVEYEKLQLRELKHGRLAMIAILGELVQEQITGQTVLQQLVEGNVNPFTPG 202

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BLAST of mRNA_Ecto-sp13_S_contig1856.5804.1 vs. uniprot
Match: A0A835ZIK7_9STRA (Chlorophyll a/b-binding protein domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIK7_9STRA)

HSP 1 Score: 182 bits (462), Expect = 7.190e-55
Identity = 102/190 (53.68%), Postives = 128/190 (67.37%), Query Frame = 0

Query:   32 PQQATSATMTKMAVNDMLGADVETDGVFDPLGYGKDDASLFRRRAVELKHGRVAMLAVTGYLFAEQWH---PLYDGK--LSPGLKALGELPLAAWVQILGAIAVVELTVGKQDYENKAPGELGNFGQAWNPYPDNPVAFSKLQLKELKNGRLAMLAIMGEMVQEKLTGQTVIEQLASGHISPFGDGQGAF 216
            P ++ +A +T+MAV DMLGAD+ET GV+DPL   KDD +LF+ R VELKHGRVAMLA  G L     H   P++     L+   + L E P+A W QI  A+   EL++GKQDYENKAPG++  FG    P  ++   + K+QL+ELKNGRLAM+A +G  VQE LTGQ  IEQL  GHISPFGDG G F
Sbjct:    2 PLRSAAAAVTRMAVQDMLGADIETSGVWDPLRLSKDDGNLFKYREVELKHGRVAMLATLGVLVQSFNHLPDPVFSNPRPLAALSQILAERPVAFW-QIFLAVGAFELSIGKQDYENKAPGDIATFGDFVKPSDEDE--WEKIQLRELKNGRLAMVASIGMFVQEALTGQGPIEQLQVGHISPFGDGSGFF 188

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BLAST of mRNA_Ecto-sp13_S_contig1856.5804.1 vs. uniprot
Match: A0A835ZDP1_9STRA (Light harvesting complex protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDP1_9STRA)

HSP 1 Score: 182 bits (462), Expect = 1.570e-54
Identity = 116/222 (52.25%), Postives = 144/222 (64.86%), Query Frame = 0

Query:    1 MKMEIGALALTLATTTAFVAPSAFHGSQIARPQQATSATMTKMAVNDMLGADVETDGVFDPLGYGKDDASLFRRRAVELKHGRVAMLAVTGYLFAEQWHPLYDGKLSPGLK---ALGELPLA---AWVQILGAIAVVELTVGKQDYENKAPGELGNFGQAWNPYPDNPVAFSKLQLKELKNGRLAMLAIMGEMVQEKLTGQTVIEQLASGHISPFGDGQGAF 216
            M+  I  L   +A  +AFVAPS+F GS +     +TS+T  KM+V++++GAD ET GV+DP G+ KDDA+L++ R VELKHGRVAMLA  G L  + +  L D   + G K   A  EL  +   A  QI  A   +EL V KQD E  A G+LG FG     YPD    F  LQLKELKNGRLAM+AI+G  VQEKLTGQ  IEQ+ +GH+SPFGDGQGAF
Sbjct:    1 MQTTIAVLLACVAGASAFVAPSSFAGSAL--KVASTSSTSLKMSVDELIGADTETSGVWDPAGFAKDDAALYKYREVELKHGRVAMLATLGVL-VQSFVTLPDPVFANGAKPQTAAWELVTSRPEALAQIFLACGAIELLVLKQDPEKPA-GDLG-FGA----YPDTEEEFETLQLKELKNGRLAMMAIVGMFVQEKLTGQGPIEQILAGHVSPFGDGQGAF 213

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BLAST of mRNA_Ecto-sp13_S_contig1856.5804.1 vs. uniprot
Match: A0A0G4GDB0_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GDB0_VITBC)

HSP 1 Score: 182 bits (461), Expect = 2.290e-54
Identity = 113/216 (52.31%), Postives = 140/216 (64.81%), Query Frame = 0

Query:    3 MEIGALALTLATTTAFVAPSAFHGSQIARP---QQATSATMTKMAVNDMLGADVETDGVFDPLGYGKDDASLFRRRAVELKHGRVAMLAVTGYLFAEQWHPLYDG------KLSPGLKALGELPLAAWVQILGAIAVVELTVGKQDYENKAPGELGNFGQAWNPYPDNPVAFSKLQLKELKNGRLAMLAIMGEMVQEKLTGQTVIEQLASGHISPF 209
            M+  A+A  L    A+   +AF  S   R    ++A  +T  KM+V +M+GADVET GVFDPL + +D+ASLFRRRAVELKHGR+AMLA  GY        L D        LS   K L E P AA  QI+ AIA +EL  G+QDYENKAPG+LG FG ++     +P  F K QL+ELKNGRLAM+ IMG MVQE LTGQ+V EQ+ SG+I+PF
Sbjct:    1 MKCVAVASLLLIAVAYGEEAAFVPSAPLRSLPTRRALRSTTPKMSVEEMIGADVETGGVFDPLKFSEDEASLFRRRAVELKHGRIAMLACLGYFVQSAGVHLPDPVFSEPRPLSALTKVLTERPWAA-AQIVAAIAAIELGPGRQDYENKAPGDLGYFGDSFKN--SDPEEFRKDQLRELKNGRLAMIGIMGMMVQEGLTGQSVWEQIGSGNINPF 213

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig1856.5804.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig1856.5804.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FPU8_ECTSI	3.750e-150	98.61	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
A0A835ZQ88_9STRA	1.830e-87	66.02	Light harvesting complex protein n=2 Tax=Tribonema...	[more]
A0A0G4EVU7_VITBC	8.550e-83	59.81	Uncharacterized protein n=1 Tax=Vitrella brassicaf...	[more]
W7TFG9_9STRA	1.650e-79	61.17	Light harvesting complex protein n=2 Tax=Monodopsi...	[more]
A0A835ZAI4_9STRA	8.160e-63	57.55	Light harvesting complex protein n=1 Tax=Tribonema...	[more]
W7U405_9STRA	4.170e-58	53.36	Light-harvesting protein n=2 Tax=Monodopsidaceae T...	[more]
A0A7R9U311_9STRA	3.270e-57	55.29	Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi...	[more]
A0A835ZIK7_9STRA	7.190e-55	53.68	Chlorophyll a/b-binding protein domain-containing ...	[more]
A0A835ZDP1_9STRA	1.570e-54	52.25	Light harvesting complex protein n=2 Tax=Tribonema...	[more]
A0A0G4GDB0_VITBC	2.290e-54	52.31	Uncharacterized protein n=2 Tax=Vitrella brassicaf...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 56..190 e-value: 3.1E-28 score: 99.3
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 42..212 e-value: 2.7E-35 score: 123.9
None	No IPR available	PANTHER	PTHR21649:SF63		coord: 11..195
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 27..216
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 19..26
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..6
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 7..18
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..26
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..17 score: 0.577
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 50..210
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 11..195

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig1856	contig	Ecto-sp13_S_contig1856:8575..12329 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig1856.5804.1	mRNA_Ecto-sp13_S_contig1856.5804.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig1856 7225..12329 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig1856.5804.1 ID=prot_Ecto-sp13_S_contig1856.5804.1|Name=mRNA_Ecto-sp13_S_contig1856.5804.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=217bp
MKMEIGALALTLATTTAFVAPSAFHGSQIARPQQATSATMTKMAVNDMLG
ADVETDGVFDPLGYGKDDASLFRRRAVELKHGRVAMLAVTGYLFAEQWHP
LYDGKLSPGLKALGELPLAAWVQILGAIAVVELTVGKQDYENKAPGELGN
FGQAWNPYPDNPVAFSKLQLKELKNGRLAMLAIMGEMVQEKLTGQTVIEQ
LASGHISPFGDGQGAF*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR022796	Chloroa_b-bind
IPR023329	Chlorophyll_a/b-bd_dom_sf
IPR001344	Chloro_AB-bd_pln