mRNA_Ecto-sp13_S_contig18515.5781.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18515.5781.1
Unique NamemRNA_Ecto-sp13_S_contig18515.5781.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18515.5781.1 vs. uniprot
Match: D8LD49_ECTSI (DNA polymerase epsilon subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD49_ECTSI)

HSP 1 Score: 317 bits (811), Expect = 3.320e-104
Identity = 160/164 (97.56%), Postives = 163/164 (99.39%), Query Frame = 1 
Query:    1 EDAGTRKRSMHGPAESKARMYRERFLMVRQRVHRHDLFRPPIIESSRREYIKLSPLDSLVGSADLRWLLGMLTQPEEGKYFLEDEVTRLPLDLSDAHKTEGLFTEHCVVIVEGKMTAGVFQVAMVGFPPIEAREDSLRALGRADLFGTGVNPQQMERMRQLEVR 492
            EDAGTRKRSMHGPAESKARMYRERFLMVRQRV RHDLFRPPIIESSRREYIKLSPLDSLVGSADLRWLLGMLTQPEEGKYFLEDEVTRLPLDLS+AHKTEGLFTEHCVVIVEGKMTAGVFQVAMVGFPPIEAREDSLRALGRADLFGTGVNPQQMERMRQLE++
Sbjct:  108 EDAGTRKRSMHGPAESKARMYRERFLMVRQRVQRHDLFRPPIIESSRREYIKLSPLDSLVGSADLRWLLGMLTQPEEGKYFLEDEVTRLPLDLSNAHKTEGLFTEHCVVIVEGKMTAGVFQVAMVGFPPIEAREDSLRALGRADLFGTGVNPQQMERMRQLELK 271
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BLAST of mRNA_Ecto-sp13_S_contig18515.5781.1 vs. uniprot
Match: A0A835YQA3_9STRA (DNA polymerase epsilon subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQA3_9STRA)

HSP 1 Score: 157 bits (397), Expect = 1.490e-42
Identity = 76/153 (49.67%), Postives = 110/153 (71.90%), Query Frame = 1 
Query:   28 MHGPAESKARMYRERFLMVRQRVHRHDLFRPPIIESSRREYIKLSPLDSLVGSADLRWLLGMLTQPEEGKYFLEDEVTRLPLDLSDAHKTEGLFTEHCVVIVEGKMTAGVFQVAMVGFPPIEAREDSLRALGRADLFGTGVNPQQMERMRQLE 486
            +H   E+K  M R+R L+++QR  RH+LFR P+I SSR++ IKL+ LDSL+GS   + ++GMLTQP EG Y +ED   ++P+D+S A  T G+FTE+CVV+ EG+M  G F++ M+GFPP E R+ +  A+G+ DLFGTG+  QQ+E +  LE
Sbjct:  117 LHAGPEAKGEMLRDRLLLMQQRTQRHELFRAPVIASSRKDTIKLTSLDSLLGSHGGKCIMGMLTQPSEGAYHIEDLTCQVPIDVSGAGYTAGMFTENCVVVAEGEMVDGAFRIDMMGFPPPELRKATALAIGQPDLFGTGMTHQQVELLDNLE 269
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BLAST of mRNA_Ecto-sp13_S_contig18515.5781.1 vs. uniprot
Match: A0A7S1GD26_9STRA (DNA polymerase II subunit 2 (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GD26_9STRA)

HSP 1 Score: 156 bits (394), Expect = 3.760e-42
Identity = 74/153 (48.37%), Postives = 110/153 (71.90%), Query Frame = 1 
Query:   28 MHGPAESKARMYRERFLMVRQRVHRHDLFRPPIIESSRREYIKLSPLDSLVGSADLRWLLGMLTQPEEGKYFLEDEVTRLPLDLSDAHKTEGLFTEHCVVIVEGKMTAGVFQVAMVGFPPIEAREDSLRALGRADLFGTGVNPQQMERMRQLE 486
            +H PAE+   M+RER+ +V QRV R+ +F PP++ SS+REY +L+PL+SL+G+   +++LGML QPEEG+Y +ED+ +R+P+DLS A  T GLFTE  +V+ +G++  G F VAM+GFPP E R DSL A+G  D  G    P ++ +++ LE
Sbjct:  159 LHCPAETNIAMWRERYQLVEQRVLRNAMFSPPVLGSSKREYFQLTPLESLLGTTGTKYVLGMLVQPEEGRYCIEDQSSRVPIDLSAASTTSGLFTECSIVLAQGELREGTFHVAMMGFPPPEKRVDSLLAMGTVDPMGLLTTPHELRKVQALE 311
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BLAST of mRNA_Ecto-sp13_S_contig18515.5781.1 vs. uniprot
Match: A0A7S4I565_9STRA (DNA polymerase epsilon subunit n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I565_9STRA)

HSP 1 Score: 131 bits (329), Expect = 1.060e-32
Identity = 69/166 (41.57%), Postives = 111/166 (66.87%), Query Frame = 1 
Query:   22 RSMHGPAESKARMYRERFLMVRQRVHRHDLFRPPIIESSRREYIK------LSPLDSLVGSADLRWLLGMLTQPEEGKYFLEDEVTRLPLDLSDAH-KTEGLFTEHCVVIVEGKMTAGVFQVAMVGFPPIEAREDSLRALG--RADLFGTGVNPQQMERMRQLEVR 492
            RS+   A  KA MY +R+ +++QR+ R DLFRP ++ +  R   +      L+P++SL+G + L++LLGM+ Q EEG+Y+LED   ++P+DL+ A   T+G  TE+C+V+VEG+M  G+FQV  +G P IE R+D+L A+G    D+F +  +  + E+MR+ E+R
Sbjct:  125 RSLFAEAPHKADMYAQRYGLIQQRILRQDLFRPRLVTADGRRSDESNATHVLTPVESLLGQSGLKFLLGMIVQVEEGRYYLEDTTAQVPMDLTGAEILTDGFITENCIVLVEGEMVDGIFQVVRMGHPIIETRQDALDAIGLQNTDIFNSMSSLAEQEKMREQEIR 290
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BLAST of mRNA_Ecto-sp13_S_contig18515.5781.1 vs. uniprot
Match: A0A3Q7Y3K5_CICAR (DNA polymerase epsilon subunit B-like n=1 Tax=Cicer arietinum TaxID=3827 RepID=A0A3Q7Y3K5_CICAR)

HSP 1 Score: 120 bits (300), Expect = 1.730e-31
Identity = 58/143 (40.56%), Postives = 93/143 (65.03%), Query Frame = 1 
Query:   28 MHGPAESKARMYRERFLMVRQRVHRHDLFRPPIIESSRREY--IKLSPLDSLVGSADLRWLLGMLTQPEEGKYFLEDEVTRLPLDLSDAHKTEGLFTEHCVVIVEGKMTA-GVFQVAMVGFPPIEAREDSLRALGRADLFGTG 447
            +HG A +K  +YR+ FL++ QR+ RH  F  P  ES   ++   ++SP+ SLVG    RW++G+++Q E+G ++LED    + ++LSDA+ T GLF E+ +V+ EG+M   G+F++   GFPP+E R+ SL+ +   D FG G
Sbjct:   13 IHGDAPAKTALYRDMFLLLSQRISRHQDFSRPAFESELSQFRSCEISPIQSLVGQKGRRWVMGVISQLEDGHFYLEDLTASVEINLSDANITTGLFIENTIVVAEGEMLVEGIFKILTCGFPPLEDRDKSLQVVAGQDFFGGG 155
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BLAST of mRNA_Ecto-sp13_S_contig18515.5781.1 vs. uniprot
Match: A0A059AW13_EUCGR (DNA polymerase epsilon subunit n=7 Tax=Myrtoideae TaxID=1699513 RepID=A0A059AW13_EUCGR)

HSP 1 Score: 127 bits (318), Expect = 3.160e-31
Identity = 65/159 (40.88%), Postives = 105/159 (66.04%), Query Frame = 1 
Query:   28 MHGPAESKARMYRERFLMVRQRVHRHDLFRPPIIESSRREY--IKLSPLDSLVGSADLRWLLGMLTQPEEGKYFLEDEVTRLPLDLSDAHKTEGLFTEHCVVIVEGKMTA-GVFQVAMVGFPPIEAREDSLRALGRADLFGTG-VNPQQMERMRQLEVR 492
            +HG A +KA++Y++RFL++ QR+ R   F  P  E+   E+   ++SP+ SLVG    RW++G+++Q E+G ++LED    + ++LSDA  T G FTE+ +V+VEG+M   G+F++   GFPP+E R+ SL+AL   D FG G +  ++  R+ +LE R
Sbjct:  123 IHGEASAKAKLYKDRFLLLYQRLSRDQHFAKPAFETETTEFGSCEISPIQSLVGQTGRRWVMGVISQLEDGHFYLEDLTASVEINLSDAKVTTGFFTENTIVVVEGQMLLEGIFKIFTCGFPPLEERDKSLKALAGLDFFGGGALTKEETLRLAELEKR 281
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BLAST of mRNA_Ecto-sp13_S_contig18515.5781.1 vs. uniprot
Match: UPI00098DBD87 (DNA polymerase epsilon subunit B n=1 Tax=Cajanus cajan TaxID=3821 RepID=UPI00098DBD87)

HSP 1 Score: 123 bits (308), Expect = 7.560e-30
Identity = 63/143 (44.06%), Postives = 92/143 (64.34%), Query Frame = 1 
Query:   28 MHGPAESKARMYRERFLMVRQRVHRHDLFRPPIIESSRREY--IKLSPLDSLVGSADLRWLLGMLTQPEEGKYFLEDEVTRLPLDLSDAHKTEGLFTEHCVVIVEGKMTA-GVFQVAMVGFPPIEAREDSLRALGRADLFGTG 447
            +HG A +KA +YR+RFL++ QR+ R   F  P  ES    +   ++SP+ SLVG    RW++G+++Q E+G Y+LED    + + LS+A  T GLFTE+ +V+VEG+M   G+FQV   GFPP+E R+ SL+     D FG G
Sbjct:  117 IHGEASAKAALYRDRFLLLSQRLSRDQHFSKPAFESEFSHFGSCEISPIQSLVGQPGRRWVMGVISQLEDGHYYLEDLTAAVKISLSNAKITTGLFTENTIVVVEGEMLVEGIFQVLTCGFPPLEDRDKSLKLFAGHDYFGCG 259
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BLAST of mRNA_Ecto-sp13_S_contig18515.5781.1 vs. uniprot
Match: A0A1S4DTQ5_CUCME (DNA polymerase epsilon subunit n=5 Tax=Cucurbitaceae TaxID=3650 RepID=A0A1S4DTQ5_CUCME)

HSP 1 Score: 122 bits (307), Expect = 1.090e-29
Identity = 60/148 (40.54%), Postives = 96/148 (64.86%), Query Frame = 1 
Query:   28 MHGPAESKARMYRERFLMVRQRVHRHDLFRPPIIESSRREY--IKLSPLDSLVGSADLRWLLGMLTQPEEGKYFLEDEVTRLPLDLSDAHKTEGLFTEHCVVIVEGKMTA-GVFQVAMVGFPPIEAREDSLRALGRADLFGTGVNPQQ 462
            +HG A +KA +YR+RFL++ QR+ R   F  P  +     +   ++SP+ SLVG    +W++G+++Q E+G ++LED    + ++LS+A  T GLFTE+ +++ EG+M   G+FQV   GFPP+E R+ SL+ L   D FG GV P++
Sbjct:  123 IHGDAPAKAALYRDRFLLLSQRLSRDQHFSKPAFDIGMSHFGSCEISPIQSLVGQTGRKWVMGVISQMEDGHFYLEDLTASVEINLSNAKITTGLFTENTIIVAEGEMLVEGIFQVVTCGFPPLEERDKSLKLLAGQDFFGGGVLPKE 270
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BLAST of mRNA_Ecto-sp13_S_contig18515.5781.1 vs. uniprot
Match: A0A1Y1HRD7_KLENI (DNA polymerase epsilon subunit n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HRD7_KLENI)

HSP 1 Score: 122 bits (306), Expect = 1.470e-29
Identity = 72/166 (43.37%), Postives = 105/166 (63.25%), Query Frame = 1 
Query:   13 TRKRSMHGPAESKARMYRERFLMVRQRVHRHDLFRPPIIESSRRE---YIKLSPLDSLVGSADLRWLLGMLTQPEEGKYFLEDEVTRLPLDLSDAHK---TEGLFTEHCVVIVEGK-MTAGVFQVAMVGFPPIEAREDSLRALGRADLFGTGVNP-QQMERMRQLE 486
            T K S+H  A+SK  +YR+RF +++QRV R + F  P +   R E     +L+PL SLVGS   +++LG ++Q E+G++FLED  T++ LDLS   K   T GLFTE+  V+VEG+ +  G  QV+ +G PP+E RE + R  G  D FG GV P ++ E +R+ E
Sbjct:  110 TAKLSIHADAKSKTALYRDRFTLLQQRVLRQEAFTKPALGLKRAEDTQTAELTPLQSLVGSTGTKYVLGFISQLEDGRFFLEDSTTQILLDLSQVTKENVTTGLFTENSFVVVEGQVLPTGELQVSNMGCPPVEDRETTYRLTGGLDFFGAGVIPLEKYESLREQE 275
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BLAST of mRNA_Ecto-sp13_S_contig18515.5781.1 vs. uniprot
Match: F0W3F7_9STRA (DNA polymerase epsilon subunit n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W3F7_9STRA)

HSP 1 Score: 122 bits (306), Expect = 1.610e-29
Identity = 63/154 (40.91%), Postives = 101/154 (65.58%), Query Frame = 1 
Query:   28 MHGPAESKARMYRERFLMVRQRVHRHDLF-RPPIIESSRREYIKLSPLDSLVGSADLRWLLGMLTQPEEGKYFLEDEVTRLPLDLSDAHKTEGLFTEHCVVIVEGKMTAGVFQVAMVGFPPIEAREDSLRALGRADLFGTGVNPQQMERMRQLE 486
            +HG A+ + ++ R RFL V  RV R+ +F +PP +  +  EYI+LS +DSL+G   ++ ++GML Q +  + +LED  +R+ LDL++A  TEGLFT +C V+VEG++   +  V  +GFPP E + +S+  L   D  G  ++ QQ+E+M+QLE
Sbjct:  112 LHGTAQDRLQVLRNRFLSVEWRVKRNPIFSKPPSVLGTTTEYIELSNIDSLLGINGIKRVIGMLGQDDRKRTYLEDLTSRIYLDLTEATYTEGLFTTNCTVLVEGEVINDILHVHSMGFPPPETKAESMNVLNGIDPLGVKISDQQLEQMQQLE 265
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18515.5781.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LD49_ECTSI3.320e-10497.56DNA polymerase epsilon subunit n=1 Tax=Ectocarpus ... [more]
A0A835YQA3_9STRA1.490e-4249.67DNA polymerase epsilon subunit n=1 Tax=Tribonema m... [more]
A0A7S1GD26_9STRA3.760e-4248.37DNA polymerase II subunit 2 (Fragment) n=1 Tax=Bic... [more]
A0A7S4I565_9STRA1.060e-3241.57DNA polymerase epsilon subunit n=1 Tax=Odontella a... [more]
A0A3Q7Y3K5_CICAR1.730e-3140.56DNA polymerase epsilon subunit B-like n=1 Tax=Cice... [more]
A0A059AW13_EUCGR3.160e-3140.88DNA polymerase epsilon subunit n=7 Tax=Myrtoideae ... [more]
UPI00098DBD877.560e-3044.06DNA polymerase epsilon subunit B n=1 Tax=Cajanus c... [more]
A0A1S4DTQ5_CUCME1.090e-2940.54DNA polymerase epsilon subunit n=5 Tax=Cucurbitace... [more]
A0A1Y1HRD7_KLENI1.470e-2943.37DNA polymerase epsilon subunit n=1 Tax=Klebsormidi... [more]
F0W3F7_9STRA1.610e-2940.91DNA polymerase epsilon subunit n=1 Tax=Albugo laib... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18515contigEcto-sp13_S_contig18515:40..2746 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score303.9
Seed ortholog evalue4.3e-80
Seed eggNOG ortholog2880.D8LD49
Preferred namePOLE2
Model size492
KEGG rclassRC00005,RC02795
KEGG koko:K02325,ko:K10777
KEGG ReactionR00375,R00376,R00377,R00378,R00381
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03450,ko05166,map00230,map00240,map01100,map03030,map03410,map03420,map03450,map05166
KEGG ModuleM00263
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000082,GO:0000228,GO:0000278,GO:0000731,GO:0000785,GO:0000790,GO:0003006,GO:0003674,GO:0003824,GO:0003887,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006275,GO:0006281,GO:0006301,GO:0006325,GO:0006342,GO:0006355,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007275,GO:0008150,GO:0008152,GO:0008622,GO:0009058,GO:0009059,GO:0009790,GO:0009791,GO:0009793,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010154,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010629,GO:0016043,GO:0016458,GO:0016604,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019899,GO:0019985,GO:0022402,GO:0022414,GO:0031261,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032875,GO:0032877,GO:0032991,GO:0032993,GO:0033260,GO:0033554,GO:0034061,GO:0034401,GO:0034641,GO:0034645,GO:0034654,GO:0040029,GO:0042276,GO:0042575,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044770,GO:0044772,GO:0044786,GO:0044843,GO:0045005,GO:0045740,GO:0045787,GO:0045814,GO:0045892,GO:0045934,GO:0045935,GO:0046483,GO:0048316,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051276,GO:0051302,GO:0051716,GO:0051726,GO:0051781,GO:0060255,GO:0061458,GO:0061695,GO:0065007,GO:0070013,GO:0070182,GO:0070828,GO:0070868,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090068,GO:0090304,GO:0090329,GO:0097549,GO:0140097,GO:1901360,GO:1901362,GO:1901576,GO:1902292,GO:1902315,GO:1902494,GO:1902679,GO:1902969,GO:1902975,GO:1903047,GO:1903506,GO:1903507,GO:1990234,GO:2000105,GO:2000112,GO:2000113,GO:2001141
Exons5
EggNOG free text desc.error-prone translesion synthesis
EggNOG OGsKOG3818@1,KOG3818@2759
EC2.7.7.7,6.5.1.1
Cds size465
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18515.5781.1prot_Ecto-sp13_S_contig18515.5781.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18515 40..2719 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462950.7860017-CDS-Ecto-sp13_S_contig18515:39..1681681462950.7860017-CDS-Ecto-sp13_S_contig18515:39..168Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18515 40..168 -
1681462950.7999113-CDS-Ecto-sp13_S_contig18515:416..4911681462950.7999113-CDS-Ecto-sp13_S_contig18515:416..491Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18515 417..491 -
1681462950.81484-CDS-Ecto-sp13_S_contig18515:884..9951681462950.81484-CDS-Ecto-sp13_S_contig18515:884..995Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18515 885..995 -
1681462950.827957-CDS-Ecto-sp13_S_contig18515:1360..14861681462950.827957-CDS-Ecto-sp13_S_contig18515:1360..1486Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18515 1361..1486 -
1681462950.8384352-CDS-Ecto-sp13_S_contig18515:2695..27191681462950.8384352-CDS-Ecto-sp13_S_contig18515:2695..2719Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18515 2696..2719 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462950.8481963-UTR-Ecto-sp13_S_contig18515:2719..27461681462950.8481963-UTR-Ecto-sp13_S_contig18515:2719..2746Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18515 2720..2746 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18515.5781.1

>prot_Ecto-sp13_S_contig18515.5781.1 ID=prot_Ecto-sp13_S_contig18515.5781.1|Name=mRNA_Ecto-sp13_S_contig18515.5781.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=155bp
MHGPAESKARMYRERFLMVRQRVHRHDLFRPPIIESSRREYIKLSPLDSL
VGSADLRWLLGMLTQPEEGKYFLEDEVTRLPLDLSDAHKTEGLFTEHCVV
IVEGKMTAGVFQVAMVGFPPIEAREDSLRALGRADLFGTGVNPQQMERMR
QLEVR
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mRNA from alignment at Ecto-sp13_S_contig18515:40..2746-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18515.5781.1 ID=mRNA_Ecto-sp13_S_contig18515.5781.1|Name=mRNA_Ecto-sp13_S_contig18515.5781.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2707bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18515:40..2746- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGGATGCCGGGACAAGAAAACGCAGCATGCACGGGCCAGCAGAGAGCAA
GGTTAGTCGAAAGGGAGCTGCGTTGTTCTCCTTATTCGTCTTAGTTTTTG
GTGGTGCTGCACTAGCTGCTGTTGCTGTTGCTGTGATTTGTGTTATGGCC
ATCGTTGCTGCCTGGGCCACATCATAGAAGCACAATCACATGCCATGGGA
ATTGTCGTGACCTTCGGGGGAACTACTCCTGCTGTCGTCAACGAGGCCAC
AACCAACTCCCTTCTTCGCGAATGTCAAAGGGGACGAAATGGTACCTGTT
CTGGCCTGATTAGTCGCAATTTTCTCCTGCCTTGCCCCGGGATATATCGA
TAGACTTGACCCGCGTGTCCACTGCCTCGGGGTGCTGATGCAGGGGGCGC
CGTGGTTGAAATCGGGTACCATACGTGAGTTCAAACATTTCACTCCCCCG
GACCGATTTTCATAGCTTCATTAGTATAGTATGCACCAGGAACAGCGGTA
GTGCGAAAACTGGCGACGTTGGATACTTCTCGTCGATAGCATTCCGACAA
CGCCCCGTTTGGTGTGTCCGTCCTGCTCGTTGTGGAGCAATCGAGGTCTT
AGCCTCTGTCCGGGGCGTGTGATATCTTGCGTATGCGACCCAAGGTAGAC
ATGTTGGCGGGGAGTGTCCAGGAAAACGAGTATAAGCTGGCGTTCTCGGA
ATCTGGCATATTTGAATTGTGATGACCCTTCCTCATTGCTCGTCCGCAAA
AACTGTAACTCCTACATTGTCTTGGTTTGCAGTGTTTCGCTTTGACTCTT
GCACGAGAAAACCTATTACAGACCTGTGTGTGTATGTTTGGTGACAACAC
TTTTTATTTCGCGTCGCCTCTTGATGCACGGGAAGGAGTGAAGATTGCGT
GTTCCTTTCGACTACGATGGCTCCTTACAGTGCATGAGGAAGCAACTGGG
TACCTTTCGGTAGAGCACGTCGGCGGTTCGGGTGCTGATATTGTCGCGCT
TGAACTTAAAAGGCTCGCCCGATGTGCGTTTGTTTATCGAAACGTGGTAG
CCTGCTTTTTGTTTTGTAGGGATTGCGTTCCTTGCGTCGCTGACTCCGTA
CACACCTATGTGGAGGAATTGCCACATGTGGGCTGCTGATACTTTGTCCC
CTTGGAGTTTCTCCTTCTCCCTTGCCATCTTTCTACAGTTGATTTATACC
CGAAATACTGTCAACACACCTGCACCCCAATCCCATCACGCTTACTATTA
TACTACACAGGCGCGCATGTACCGAGAGCGTTTCTTGATGGTCCGGCAGA
GAGTGCACCGTCACGACCTTTTCCGGCCTCCTATCATAGAGTCTTCTCGG
CGAGAGTACATCAAGCTCTCCCCGCTAGACTCTCTGGTTAGTGAGGTGTT
TAGCAGGGTTTAGTTTCCCTGCTGACGCTCGTTTAGCGGTCGTTGTTTGC
TGCTGTGGTCGTTGGTGTTGATGTTGTCTCTGCTGGTTGAGTTGGTGTTG
GTGGTGGTGGTGCTGCTGCTGCTGCCTTGGAGAGGAACATGTTGGGTGAT
AGTGCTGGCGGTGGTGGTGCGATAGCGGTGTGGATGTAGTGGAGAGGAAC
TTGTTGTCATTGTTGTCGTTGTTGGGGATGATGGTGATGCTGATGTTGAT
GTAGTGGGTGCTGTCGTTGTTGTTGATGGTGGTGGTAGTGGTGATACTGT
CATATTTGTTTGCTGGCGCTGTTGCTGGTGCTATTGCCTCCGCGTCTGTA
GGTGGGCAGTGCCGACCTCCGCTGGCTGCTTGGCATGCTCACGCAACCGG
AGGAGGGGAAATATTTCCTGGAGGACGAGGTCACGAGGCTACCGCTCGAC
CTCTCCGATGCGGTGAGCCAGTCCTTTTTTTTCGTCTTTTTTTCCGTTGA
TAAGGCCGTCAATCTGCCTTGTTTTCCGTCGAAGTATGACCGTCGATGTC
GTTTTGGTTTGACGCTGATATGTTGCAGTCGTTCTGATGCCGACCATGTC
TTCGTTGTGCTGTTGTCCTTGTAGTCTGGTGGTGTTGGCGAGGGTTCTTG
CGGCGAAGGTGTTGCTTGTGCGCACCACCTCCACCACCCAGAATGACAAC
AACCAACAACAACAAGAACAATAACAGCTACTACTACTATTATACTTCTA
CAACTACTACTACTACAAGTACGACGTTTGCATGGCCGTACCGTTAGCCT
AACCAACTGACAAAAGAACCAAACGAACGGGCTGAATCAAACGAAATCGG
ACCAGCACAAGACGGAGGGTCTCTTCACCGAGCACTGCGTCGTCATCGTC
GAGGGGAAGATGACCGCGGGGGTGTTTCAGGTAAGCGAGTCAACAGGGAG
GCAGGCCGGTGTGTCTTATGCGAATTGTTTATGCGATTGACCGACAAATC
CATTCCCATATCATTATTAGGCCAAGCATCGGCGAGGCAACCGCTTACCT
AGATCAACGGACCCTCGCCTGGACGCCGCTTTTCAAAGCAACCGCTCCCT
CTCCCTCTCTTCTGCTCTCTGTCTGTGTGTGTGTGTGTCTCTCTCTCTCT
CTCTCTCTCTGTGCTTGCATCTTGTCAGGTGGCAATGGTGGGATTCCCAC
CGATTGAGGCAAGGGAAGACTCGTTAAGAGCGCTGGGCCGTGCAGATCTC
TTTGGGACAGGGGTCAACCCCCAGCAGATGGAGCGCATGCGGCAACTCGA
GGTGCGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18515:40..2746-

>mRNA_Ecto-sp13_S_contig18515.5781.1 ID=mRNA_Ecto-sp13_S_contig18515.5781.1|Name=mRNA_Ecto-sp13_S_contig18515.5781.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=465bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18515:40..2746- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCACGGGCCAGCAGAGAGCAAGGCGCGCATGTACCGAGAGCGTTTCTT
GATGGTCCGGCAGAGAGTGCACCGTCACGACCTTTTCCGGCCTCCTATCA
TAGAGTCTTCTCGGCGAGAGTACATCAAGCTCTCCCCGCTAGACTCTCTG
GTGGGCAGTGCCGACCTCCGCTGGCTGCTTGGCATGCTCACGCAACCGGA
GGAGGGGAAATATTTCCTGGAGGACGAGGTCACGAGGCTACCGCTCGACC
TCTCCGATGCGCACAAGACGGAGGGTCTCTTCACCGAGCACTGCGTCGTC
ATCGTCGAGGGGAAGATGACCGCGGGGGTGTTTCAGGTGGCAATGGTGGG
ATTCCCACCGATTGAGGCAAGGGAAGACTCGTTAAGAGCGCTGGGCCGTG
CAGATCTCTTTGGGACAGGGGTCAACCCCCAGCAGATGGAGCGCATGCGG
CAACTCGAGGTGCGC
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