mRNA_Ecto-sp13_S_contig185.5774.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig185.5774.1
Unique NamemRNA_Ecto-sp13_S_contig185.5774.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig185.5774.1 vs. uniprot
Match: D7FK46_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK46_ECTSI)

HSP 1 Score: 627 bits (1618), Expect = 8.970e-218
Identity = 334/585 (57.09%), Postives = 399/585 (68.21%), Query Frame = 1
Query:  241 VCLSGAVRSFVHPAVHRSIKSNLIESIEADGCAVDVFAYATREDTVPRHKQRENSDFTPNSSDIETAMATLAPTRLVWHQEQAGIIPSCCAQATSSAESGGDEA---WYTTEAVSGEDASGLGNGVWRPPPWQVYRADASRNLYWQLYKSLSAYRMALREEKRKGNGFAYDWIIRSRFDVAWIRPLPALRSFSREAVWLGRHYWPVSDHFALVPRAFSDRFFTAVKTFYTCDGQSWPPTVSWWQPECSG-GFDESVLFRHLHASNIPFRYYFNFEYVITRGELGGKCHLGETLHSESCSILKLWNAFQSSYNREDCIEAVAEWANLRCRALLPAEGMSDPRRTQAVIDPHPRAWQAFI-ASQSLEPTSVAKSSAXXXXXXXXXENTPPTLEGTSFAGGSLRPTSVPHIDEVNRARLKLVALRDALVMPPRSPL-PDNDVE-RDPSGDFMAYD---GRNPLPLWSIYSHNQCPLTE-KHKGLVPHVVLYYTMGATLVRELAQVIRCFVHHEIETTSENAPMADFQGNSCEGTRALELVMIDVSLHIEELGICTADGSLGLSAYENVERFFREPATHCMQYGRLGNE 1962
            +C SGA+RSFVHPAVHRSI++NLIESI+ADGC VDVFAY TREDTV + KQ EN +FTPNSSD+E A+A L PTRL+WHQ+QAGIIP+ CA   +  ++    A   WY                 W     Q Y  +ASR+LYWQLYKSL+AYRMALREEKR G+GF YDW+IR R DVAW RPLP LRSFSR+AVW GRHYWP+SDHFALVPR FSDRFF+AVKTFY CDG+SWPP  SWWQPEC+  GF+ESVLFRHLHAS IP+R+Y  F+++ITRG +GG C LG  ++SE CS+L LWNA Q  ++R+ C+EA+AE+++LRCR L PA GM D RR  A++DP PRAW+A + +S  LEP     +                  EG S        TSV   ++V+ ARLKLV LRDAL  P  SPL P  ++  R+ + +    D   G    PLW I+S   CPL E +H G  PHVVLYYTMG  LVREL Q ++CFV   I  T       D   +SC G R+L+LVMIDVSLH EELGICTADGSLGLSA E V RFF  PA HC  YGRL +E
Sbjct:    1 MCFSGAIRSFVHPAVHRSIRTNLIESIKADGCEVDVFAYVTREDTVVKAKQVENPEFTPNSSDVEVALAVLEPTRLLWHQDQAGIIPNGCAGVNNRTDASRHSARHLWY-----------------WE----QRYSPEASRSLYWQLYKSLAAYRMALREEKRIGSGFTYDWVIRGRLDVAWARPLPPLRSFSRQAVWFGRHYWPMSDHFALVPRKFSDRFFSAVKTFYACDGRSWPPPSSWWQPECATIGFEESVLFRHLHASEIPYRFYPLFDFIITRGVIGGVCKLGFIVYSEVCSLLGLWNALQPPFSRDHCLEALAEYSDLRCRTLFPARGMEDERRVDAILDPEPRAWEALLDSSPLLEPIPAVAAPGPLGR----------ATEGDSSDASIY--TSVAKAEDVDSARLKLVLLRDALQAP--SPLEPHYEMALREEAKERSLLDRWGGWKTHPLWWIHSIMGCPLAEPQHPGPSPHVVLYYTMGEPLVRELVQSVKCFVSRIIGETQVGG--GDTNQSSCNGVRSLDLVMIDVSLHTEELGICTADGSLGLSASEQVSRFFDNPAAHCAGYGRLDSE 548          
BLAST of mRNA_Ecto-sp13_S_contig185.5774.1 vs. uniprot
Match: D7G5E2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5E2_ECTSI)

HSP 1 Score: 296 bits (758), Expect = 1.040e-83
Identity = 219/674 (32.49%), Postives = 308/674 (45.70%), Query Frame = 1
Query:  229 CRVAVCLSGAVRSFVHPAVHRSIKSNLIESIEADGCAVDVFAYATREDTVPRHKQRENSDFTPNSSDIETAMATLAPTRLVWHQEQAGIIP-SCCAQATSSAESGGDEAWYTTEA-------------VSGEDASGL--GNGVWRP--PPWQVYRADASRNLYWQLYKSLSAYRMALREEKRKGNGFA-----------YDWIIRSRFDVAWIRPLPALRSFSREAVWLGRHYWPVSDHFALVPRAFSDRFFTAVKTFYTCD---GQSWPPTVSWWQPEC---------------SGG---------------------------------------FDESVLFRHLHASNIPFRYYFNFEYVIT-------------RGELGGKCHLGETLHSESCSILKLWNAFQSSYNREDCIEAVAEWANLRCRALLPAEGMSDPRRTQAVIDPHPRAWQAFIASQSLEP--TSVAKSSAXXXXXXXXXENTPPTLEGTSFAGGSLRPTSVPHIDE--VNRARLKLVALRDALVMP--------------------PRSPLPDNDVERDPSGDFMAY---DGRNPLPL----WSIYSHNQCPLTEKHKGLVPHVVLYYTMGATLVRELAQVIRCFVHHEIE-TTSENAPMADF--QGNSCEGTRALELVMIDVSLHIEEL 1851
            C VAV +SG VRSFV P +HRS + +++E+I+A+GC VDVF YA+  D     +Q   +       +IE  M  L+PT+LVWHQEQAGIIP SC   AT+    GGDEA  ++ A             V G++ S    G+    P  PP +   +  S   YWQLY+SL+AYR+A++ E  K    A           YDWI+ +RFDVAW + LP+ R+FSR+ VW     WP+S +FALVPRAFSDRFF+AV+ F+ CD   G SWPP  +WWQP+C               SGG                                       F ES+++RHLHAS +P+R Y  FEY                 G+    C      +   C +L     F  +Y  E+C  A++EW++L CR     E      +T+               S++L+P  T+  +SS          +N           G  L       + E  + RA   L ALRDA+++                     P       ++ ++  GD  A     G +P       WS++S   C L E + G  PH++ + +  +  +RELA   +C  H  IE  T+ ++   DF      C  +R+LELVMIDVSLH  E+
Sbjct:   39 CAVAVSISGDVRSFVDPVLHRSFRRHVVEAIKAEGCTVDVFVYASLGDEDLLVEQDAET-----IRNIEATMEFLSPTQLVWHQEQAGIIPNSCRPTATTPTTGGGDEAQPSSFAESSVPNARPTGGNVGGDNRSNQPRGHASKEPSKPPSREQFSTRSERFYWQLYESLAAYRLAVQREDEKEKEAATIPTSSPASSKYDWIVTTRFDVAWKKSLPSFRAFSRDVVWFAAKSWPMSTNFALVPRAFSDRFFSAVEAFHACDDGNGPSWPPGEAWWQPDCGEHGQENGNSSGNVHSGGNLHHSPRSGPAGGGGGFELRGSDDGSIFHDNRGGGRGEGFGESIVYRHLHASGVPYRPYPMFEYYTVPPYVRDGDADGDAAGDTRSGCETSTPDYFTGCVLLGTVGLFSQAYTSEECATALSEWSSLHCRTSTHLEATGPGHQTER-------------GSENLDPDLTTWPRSSVGVYPDETETDN-----------GDVLGAAEADRVQEEDLRRAWFNLAALRDAVIVAADDGSEEVMHGSSNAGEEDTPSGETSRRNLGKEDGGDHDAAPKPSGSSPTRQTNRSWSVHSQGGCRLNE-YPGRAPHIIRHSSTDSHRMRELALATKCLAHRFIEGATAWSSVNEDFGFDATVCASSRSLELVMIDVSLHSAEV 682          
BLAST of mRNA_Ecto-sp13_S_contig185.5774.1 vs. uniprot
Match: A0A6H5KVJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVJ6_9PHAE)

HSP 1 Score: 281 bits (718), Expect = 9.860e-82
Identity = 209/651 (32.10%), Postives = 297/651 (45.62%), Query Frame = 1
Query:  229 CRVAVCLSGAVRSFVHPAVHRSIKSNLIESIEADGCAVDVFAYATREDTVPRHKQRENSDFTPNSSDIETAMATLAPTRLVWHQEQAGIIP-SCCAQATSSAESGGDEA----WYTTEAVSGEDASGLGNGVWRP-------------PPWQVYRADASRNLYWQLYKSLSAYRMALREEKRKGNGFA-----------YDWIIRSRFDVAWIRPLPALRSFSREAVWLGRHYWPVSDHFALVPRAFSDRFFTAVKTFYTCD---GQSWPPTVSWWQPEC---------------SGG---------------------------------------FDESVLFRHLHASNIPFRYYFNFEYV-----ITRGELGGK--------CHLGETLHSESCSILKLWNAFQSSYNREDCIEAVAEWANLRCRALLPAEGMSDPRRTQAV---IDPHPRAWQAFIASQSLEPTSVAKSSAXXXXXXXXXENTPPTLEGTSFAGGSLRPTSVPHIDEVNRARLKLVALRDALVMPPRSPLPDNDVERDPSGDFMAYDGRNPLP--------------------------------LWSIYSHNQCPLTEKHKGLVPHVVLYYTMGATLVRELAQVIRCFVHHEIE-TTSENAPMADF 1776
            C VAV +SG VRSFV P VH S + +++E+I+A+GC VDVF YA+  D     +Q   +       +IE  M  L+PT+LVWHQEQAGIIP SC   AT+    GGDEA    + ++ A + +   G   G  R              PP +   +  S   YWQLY+SL+AYR+A++ E  K    A           YDWI+ +RFDVAW   +P+LR+FSR+ VW     WP+S +FALVPRAFSDRFF+AV+ F+ CD   G SWPP  +WWQP+C               SGG                                       F ES+++RHLHAS +P+R Y  FEY      +  G++ G         C    + +   C +L     F  +Y  E C  A++EW++L CRA    E  S  R+T+     ++P+ +AW           +SV  SS               T  G  F  G+     V   +++ RA   LVALRDA+++       D+D E    G   A +   P+                                  WS++S   C L E + G  PH++ + +  +  +RELA   +C  H  +E  T+ ++ + DF
Sbjct:   38 CAVAVSISGDVRSFVDPVVHLSFQRHVVEAIKAEGCTVDVFVYASLGDEDLLEEQDAET-----IRNIEATMEFLSPTQLVWHQEQAGIIPNSCRPTATTPTTGGGDEARPSSFASSNAANAKPKGGNVGGDNRSNQPRGHVSKEPSKPPGREQFSTRSERFYWQLYESLAAYRLAVQREDEKEKEAATIPTSSPASSKYDWIVTTRFDVAWKNSVPSLRAFSRDVVWFAAKSWPMSTNFALVPRAFSDRFFSAVEAFHACDDGNGPSWPPGEAWWQPDCGEDGQENENGSGSVHSGGNLHHSPRGGPAGGGGDFDLRDWDDGSIFHDNRGGSRGEGFGESIVYRHLHASGVPYRPYPMFEYYAVPPYVRDGDVDGGAARDTRSGCEASTSDYLTGCVLLGTVGLFSPAYTSEACATALSEWSSLHCRASTQPEATSTGRQTERASKNLNPYLKAWPR---------SSVGVSSGEAK-----------THRGDVF--GTAEEDRVQE-EDLKRAWSNLVALRDAVIL-----AADDDSEEATHGSSNAGEDDTPIREASRRHLGKDDGGDHDAAPKPSNSSPTRQTNRSWSVHSQWGCRLNE-YPGRAPHIIRHSSTDSHRMRELALATKCLAHRFMEGATAWSSVIEDF 654          
BLAST of mRNA_Ecto-sp13_S_contig185.5774.1 vs. uniprot
Match: A0A7S2WLT0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WLT0_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 8.180e-15
Identity = 88/283 (31.10%), Postives = 126/283 (44.52%), Query Frame = 1
Query:  229 CRVAVCLSGAVRSFVHPAVHRSIKSNLIESIEADGCAVDVFAYATREDTVPRHKQRENSDFTPNSSDIETAMATL--------APTRLVWHQEQAGIIPSCCAQATSSAESGGDEAWY---TTEAVSGEDASGLGNGVWRPPPW-QVYRADASRNLYWQLYKSLSA-YRMALREEKRKGNGFAYDWIIRSRFDVAWIRPLPALRSFSREAVWLGRHYWPVSDHFALVPRAFSDRFFTAVKTFYTCDGQSWPPTVSWWQPEC---SGGFDESVLFRHLHASNIP 1029
            CRVAVC+SG  R+F HP V ++   NL+ ++E   C VD+F      D V   +    S  T   S  E  +  L        +  RLV   E    +P           +G   A Y   T  +     A+G G+   R  P  +V  A A+    W   +S+S+   + LREE+ +     Y W+IR+RFD++++ PLP L S SR+AV +     P+SD FA+VPRA+ D +F A           W      W+        G  E VL   L A+  P
Sbjct:  476 CRVAVCMSGQWRTFAHPLVRQTFHQNLLGALETS-CEVDLFLCIKPSDQVAGRRNEHFSRTTAAPSTREAILEVLRAELPDVLSRVRLVLADEP---LPQ---------SNGQTSALYPLDTGTSFPKACANGGGDCCSRSQPSAEVQSALAAA---WPSLESVSSCLDLVLREERLRQQD--YHWVIRTRFDLSYLVPLPPLASLSRKAVHVPYSSLPISDTFAVVPRAYVDAYFMA-------SDLCWRGACHRWRARDFPKGAGSTELVLLAALRAAEAP 733          
BLAST of mRNA_Ecto-sp13_S_contig185.5774.1 vs. uniprot
Match: A0A7S4A1A7_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A1A7_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 3.280e-14
Identity = 95/358 (26.54%), Postives = 137/358 (38.27%), Query Frame = 1
Query:  238 AVCLSGAVRSFVHPAVHRSIKSNLIESIEADGCA-VDVFAYATREDTVPRHKQRENSDFTPNSSDIETAMATLAPTRLVWHQEQAGIIPSCCAQATSSAESGGDEAWYTTEAVSGEDASGLGNGVWRPPPWQVYRADASRNLYWQLYKSLSAYRMALREEKRKGNGFAYDWIIRSRFDVAWIRPLPALRSFSREAVWLGRHYWPVSDHFALVPRAFSDRFFTAVKTFYTCDGQSWPPTVSWWQPECSGGFD-ESVLFRHLHASNIPFRYYFNFEYVITRGELGGKCHLGETLHSESCSILKLWNAFQSSYNREDCIEAVAEWANLRCRALLPAEGMSDPRRTQAVIDPHPRAWQAFIA 1305
            AVC +G     + P V R  K  +++++   GCA VD F Y T ++T    +QR++    PN+S IE             H       P            G DE          +DA                          QL K+ + Y  AL E         YDW++R+R D+AW+  +P ++S   + V++ +H WPV D F + P   +   F AV       GQ      S  Q E  G    ES L RHL +  IP + Y  F +V  R   GG C     +H+ +C +     A       ++C  AV       CR   P  G      +   +D    AW+A  A
Sbjct:   32 AVCFAGNAVGLMQPQVRRFAKERMVDAL---GCAAVDSFFYLTLDNT----QQRDDLLPAPNAS-IEAV-----------HAAAREFNPVSVTMRVRDDSLGSDE----------DDAHA------------------------QLSKAAACY--ALVEASELAARKRYDWVVRTRPDLAWVAAVPPVKSLYEDRVYVSQHSWPVGDAFFVAPGKLAREVFRAVDAL----GQDSHCDAS--QVEKIGHLAAESALHRHLASRKIPTQLYDGFAFVAARWREGGDCRTLGQVHASACVL-----AANEGLVSDECQAAVTRPYEEGCRRDFPPLG--GEASSAEALDFDDAAWRAAAA 321          
BLAST of mRNA_Ecto-sp13_S_contig185.5774.1 vs. uniprot
Match: A0A8J2T2U1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T2U1_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 6.900e-9
Identity = 78/286 (27.27%), Postives = 113/286 (39.51%), Query Frame = 1
Query:  253 GAVRSFVHPAVHRSIKSNLIESIEADGCAVDVFAYATREDTVPRHKQRENSDFTPNSSDIETAMATLAPTRLVWHQEQAGIIPSCCAQATSSAESGGDEAWYTTEAVSGEDASGLGNGVWRPPPWQVYR-----ADASRNLYWQLYKSLSAYRMALREEKRKGNGFAYDWIIRSRFDVAWIRPLPALRSFSREAVWLGRHYW-PVSDHFALVPRAFSDRFFTAVKTFYTCDGQS---WPPTVSWW-------QPECSGGF---------DESVLFRHLHASNIPFR 1035
            G  R+F  PAVH +IK+NLI+ I  D     VF Y + +   P       S        +  A+ T +     WH E +      C+Q                      D  GLG     PP ++ Y+      D +RN+Y    K   A+ M LREE ++G    Y+W+ R RFD AW  PL          V+     W  V+D FA   R+ + ++F+A +   TC   +   W  T+          +  CS G           E+ L+RHL   N+  R
Sbjct:   23 GHARTFAEPAVHSTIKANLIDPIGGD-----VFWYLSEK---PGWDAATESVLRDLFQPVAVAVVTSSEEG-EWHDEASTRWHGNCSQPPL------------------PDLDGLGV----PPTFKFYKDPARAVDVARNVY---AKWSRAWEMVLREEAQRGK--EYEWVARCRFDAAWYAPLQLPTEIG--VVYAPIQTWNAVNDQFAFCERSVAQQYFSASRILDTCGHDNLPRWYSTIEHGMAPTCLNEHTCSPGSVRGDPVVWQPETFLWRHLVLENVTLR 270          
BLAST of mRNA_Ecto-sp13_S_contig185.5774.1 vs. uniprot
Match: A0A7S2WMN0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WMN0_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.840e-7
Identity = 41/114 (35.96%), Postives = 58/114 (50.88%), Query Frame = 1
Query:  697 MALREEKRKGNGFAYDWIIRSRFDVAWIRPLPALRSFSREAVWLGRHYWPVSDHFALVPRAFSDRFFTAVKTFYTCDGQSWPPTVSWWQPEC---SGGFDESVLFRHLHASNIP 1029
            + LREE+ +     Y W+IR+RFD++++ PLP L S SR+AV +     P+SD FA+VPRA+ D +F A           W      W+        G  E VL   L A+  P
Sbjct:    9 LVLREERLRQQD--YHWVIRTRFDLSYLVPLPPLASLSRKAVHVPYSSLPISDTFAVVPRAYVDAYFMA-------SDLCWRGACHRWRARDFPKGAGSTELVLLAALRAAEAP 113          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig185.5774.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FK46_ECTSI8.970e-21857.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G5E2_ECTSI1.040e-8332.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KVJ6_9PHAE9.860e-8232.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2WLT0_9STRA8.180e-1531.10Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S4A1A7_9STRA3.280e-1426.54Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A8J2T2U1_9STRA6.900e-927.27Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2WMN0_9STRA1.840e-735.96Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig185contigEcto-sp13_S_contig185:12238..16430 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score298.9
Seed ortholog evalue5.8e-78
Seed eggNOG ortholog2880.D7G5E2
Model size1965
Hectar predicted targeting categoryother localisation
Exons8
EggNOG OGs2CY2I@1,2S1H1@2759
Cds size1965
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig185.5774.1prot_Ecto-sp13_S_contig185.5774.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig185 12238..16430 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462950.1638358-CDS-Ecto-sp13_S_contig185:12237..126301681462950.1638358-CDS-Ecto-sp13_S_contig185:12237..12630Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig185 12238..12630 +
1681462950.1762092-CDS-Ecto-sp13_S_contig185:12864..131011681462950.1762092-CDS-Ecto-sp13_S_contig185:12864..13101Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig185 12865..13101 +
1681462950.1851494-CDS-Ecto-sp13_S_contig185:13293..135051681462950.1851494-CDS-Ecto-sp13_S_contig185:13293..13505Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig185 13294..13505 +
1681462950.1945212-CDS-Ecto-sp13_S_contig185:13876..142001681462950.1945212-CDS-Ecto-sp13_S_contig185:13876..14200Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig185 13877..14200 +
1681462950.2114441-CDS-Ecto-sp13_S_contig185:14420..148891681462950.2114441-CDS-Ecto-sp13_S_contig185:14420..14889Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig185 14421..14889 +
1681462950.2274594-CDS-Ecto-sp13_S_contig185:15399..155661681462950.2274594-CDS-Ecto-sp13_S_contig185:15399..15566Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig185 15400..15566 +
1681462950.2378192-CDS-Ecto-sp13_S_contig185:15952..159981681462950.2378192-CDS-Ecto-sp13_S_contig185:15952..15998Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig185 15953..15998 +
1681462950.24764-CDS-Ecto-sp13_S_contig185:16313..164301681462950.24764-CDS-Ecto-sp13_S_contig185:16313..16430Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig185 16314..16430 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig185.5774.1

>prot_Ecto-sp13_S_contig185.5774.1 ID=prot_Ecto-sp13_S_contig185.5774.1|Name=mRNA_Ecto-sp13_S_contig185.5774.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=655bp
LQKYEIRGEDRAANELHLKLEAMPSAGRRQTRKRGRNYVPKFVVALLAPA
DLSVAFRGASTNKQDGRGLAGAGAVRCRVAVCLSGAVRSFVHPAVHRSIK
SNLIESIEADGCAVDVFAYATREDTVPRHKQRENSDFTPNSSDIETAMAT
LAPTRLVWHQEQAGIIPSCCAQATSSAESGGDEAWYTTEAVSGEDASGLG
NGVWRPPPWQVYRADASRNLYWQLYKSLSAYRMALREEKRKGNGFAYDWI
IRSRFDVAWIRPLPALRSFSREAVWLGRHYWPVSDHFALVPRAFSDRFFT
AVKTFYTCDGQSWPPTVSWWQPECSGGFDESVLFRHLHASNIPFRYYFNF
EYVITRGELGGKCHLGETLHSESCSILKLWNAFQSSYNREDCIEAVAEWA
NLRCRALLPAEGMSDPRRTQAVIDPHPRAWQAFIASQSLEPTSVAKSSAT
TAAAAAAAENTPPTLEGTSFAGGSLRPTSVPHIDEVNRARLKLVALRDAL
VMPPRSPLPDNDVERDPSGDFMAYDGRNPLPLWSIYSHNQCPLTEKHKGL
VPHVVLYYTMGATLVRELAQVIRCFVHHEIETTSENAPMADFQGNSCEGT
RALELVMIDVSLHIEELGICTADGSLGLSAYENVERFFREPATHCMQYGR
LGNE*
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mRNA from alignment at Ecto-sp13_S_contig185:12238..16430+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig185.5774.1 ID=mRNA_Ecto-sp13_S_contig185.5774.1|Name=mRNA_Ecto-sp13_S_contig185.5774.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4193bp|location=Sequence derived from alignment at Ecto-sp13_S_contig185:12238..16430+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTACAGAAATACGAGATCCGTGGGGAGGACAGGGCAGCTAACGAACTCCA CTTAAAGCTAGAGGCAATGCCTTCTGCTGGGAGACGGCAGACGAGGAAAA GGGGCAGAAATTACGTCCCGAAGTTTGTCGTTGCTCTGCTGGCACCTGCT GATCTGTCCGTTGCCTTTCGTGGTGCAAGTACCAACAAACAAGATGGCCG TGGTCTAGCTGGAGCTGGTGCTGTGCGTTGTCGAGTGGCTGTATGCTTGT CTGGGGCCGTCAGATCGTTCGTACACCCTGCAGTACACAGATCCATCAAG AGCAATCTGATCGAGTCGATCGAGGCGGACGGATGTGCAGTGGATGTGTT CGCCTACGCCACGCGAGAAGACACGGTGCCGAGACACAAACAGGTAACAC CCCCGTTCTATTACATCTACACTACATTACATAGTTGTGCTTTCTTTTGG GACAAGCTGCAGCTTCACCCTCCTCTAGTAAGTGAGGCACGCTATCTATA GAGGGTAAACCGTACACAACAAGCTGGAGCTCCTGGGGAACCAGCCAAAC GAGAAGCGACACATGCCCAATCGCCGCGCTAAAGGCAAACGACCCTCAAT GCCTGCATTTCACGCCGTCCGCTGCAGAGGGAGAACTCAGATTTCACGCC GAATTCATCCGACATCGAGACGGCCATGGCAACCCTAGCGCCGACCAGGC TTGTTTGGCACCAAGAACAGGCCGGCATCATCCCCAGCTGTTGCGCTCAA GCAACGTCATCAGCAGAAAGTGGCGGAGATGAGGCATGGTACACGACGGA AGCAGTTTCTGGCGAAGATGCCAGCGGTCTCGGCAATGGTGTTTGGAGGC CGCCACCATGGCAGGTTTGAAGTCGCGTGGGGTGTTATGAAAGAAGCGGA GGATGTTTCTGTACACGATTTCCACAGGCTCCACGAACACCTGGAGTCTA ACATGTTTTGTTGGTCGGCACCAGCGCGTCGTTGGGGCAAAGAAAACATG TGAAGCAATTAACGCATTCGTACAGTAGCATAAAATCCACCCTTTCTTGC TGCCAGGTTTACAGAGCCGATGCTAGTCGAAACCTCTACTGGCAATTGTA CAAGTCGCTTTCGGCCTACCGCATGGCACTTCGGGAAGAGAAGCGAAAAG GAAACGGTTTTGCATACGACTGGATCATTCGGAGTCGATTCGACGTGGCC TGGATCCGTCCCCTCCCAGCGCTACGTTCATTTTCTCGGGAAGCGGTATG GCTTGGCCGACACTATTGGTGAGGGTAGGTGCAACTACAGTATTTCCGCA GCAATGTTTTGCTGATGCCCCTCGAGCTTTTGGCAGACGGAAACGAATCG CTTCCACCACTGATGGAACACGTTGGATGGGGCCTGAACATCCGTAGCCA CCCACCACCGGGATCGTACCATCCCGTTCTCCTCGAGGTCCCAATTTGGC CATGACTTTCCTAGTCCTCTCGTTTTGGGCAGCGAAACAATACGTATGAA AAGAACCAATCGTATGTCCGAAGGCGGGCTAGCATCGCGTAGAGAAGTCA GGTTCTAGGCCTACCTGCTAAAAATCTTCCCTTTCCTCCCCCGCGCGGCA CCTTCCGTCCCCTCTTCATCGCCGCGGCTGACAAGTTAGGCCAGTATCAG ACCACTTCGCCCTGGTACCGCGTGCTTTCTCAGATCGATTTTTTACGGCC GTTAAGACCTTCTACACTTGTGACGGTCAGTCATGGCCACCCACGGTATC GTGGTGGCAACCTGAGTGCTCTGGAGGTTTCGACGAGAGCGTTCTTTTTC GGCACCTCCACGCCTCAAACATACCGTTTCGGTACTACTTCAACTTCGAG TACGTCATCACGCGAGGGGAGCTTGGTGGGAAGTGCCACCTAGGGGAAAC ATTGCACTCCGAATCATGCAGCATTTTGAAGCTTTGGAATGCGTTTCAGT CGTCATACAACAGGTGATCAATCGCGGTCCGCTCTCTCTTTCGTCAGCTC ATTTCGTATCGATCATTCAGGAAAAGATCGTTCATGGGACACCTGCGTTC AACACCTCCGTGCACCTGTGTTGTTTTGTAACCCGATGAATGAATCCTAT ACCCCGAACAAGGTCGTACAAACGCGCGTGTGCTATCTTCCTGGCATCAC CCCCGTCTGCCTACCCCCCCACTCCAAAAACAGGGAAGACTGCATAGAGG CAGTCGCGGAGTGGGCAAACCTCCGTTGCCGGGCTCTCCTACCTGCCGAG GGGATGAGCGACCCTCGAAGGACACAAGCAGTTATAGACCCACATCCTCG AGCATGGCAAGCATTCATCGCAAGCCAATCTCTTGAACCTACTTCGGTGG CGAAATCGTCTGCAACAACAGCGGCGGCAGCAGCCGCGGCAGAAAACACA CCGCCCACGTTAGAAGGGACTTCGTTCGCCGGAGGCTCTCTTAGGCCCAC CTCCGTTCCCCACATTGATGAAGTGAACCGTGCCCGGTTGAAGCTGGTCG CCCTCAGAGACGCCCTGGTGATGCCCCCTCGCTCGCCTCTACCTGACAAC GATGTCGAGAGGGATCCATCAGGCGACTTCATGGCTTATGATGGAAGGAA CCCGCTCCCGCTATGGTCAATATATTCGCATAACCAATGCCCTCTGACGG AGGTGAGGTGGAGACTCTACGTTTCGCGTTCTCGCGCTCCTGCCGATCAA GATACCCATGTTTGCATCTGTATTCCCTACTGAGCGCGGCGCATAATTGG CACCCCCGAGCAAAGATTAAACAAGCGGTTCTAGGCCCGTGGTGGGAGGG AAAACGACAGGAAACAAGATAGAGCCAGTGCGGCCAAGCTGGAAAAAACG AAAAAAGAGGGGCGCAAGCGAAACCCAAACATTGACCGGCAGGCTATGTG ACGCGTAACAAATCGGTGTGCTGATGAGTAGTCGCAGAGAGTTGTAGGTC ATCTTAGTCATCACAGTATGGAGCACTTGTAAAGAGGAAACGCACAGGAG ACAAAGCAGTTACCGAAAACTGTTCCCGTTCAGTTTCAACTCATGCGCTC GCCACATGCCGTCAACACCTGCAGACACTCCACTTAGAGAAATTGGGTGC CCGCCTTAGTCGCTCCGTCCTCCCCCCCGCCCGTTGTTCATACTCCACCC AATCGTCCACAGAAGCACAAGGGTCTGGTCCCGCACGTCGTGTTGTACTA CACCATGGGAGCAACCCTCGTTCGAGAACTAGCACAGGTTATCAGGTGCT TCGTGCATCACGAGATTGAAACAACGTCGGAAAATGCTCCAATGGCTGAC TTCCAGGGAAACTCGTGCGAGGGCACCAGGTGAACAGGATCGAAATCTGG TTGTTGGTGTAAACGTCCAGAGAGTAGCTCCAGTGGTTGCGCCTCGTTCA CGACGGGTGACCAATACATAACACGTAGAACGCAAGCATAGACTCTCATC TTCTTCTTGGTCAGGCTAAACGTGCTTGGTGAAGGTTCCACATGAACGAG GGTATAAACAAAACTTGCCGCATACTTGTTAAGCATGCGAGTTCAAACAT GCTGTAGTGCAACAGTAAAGCGACAAACCAAAGCACTAACCCTTACCATC TACTCCGCCCCGCCACGTGCGGTATTTCATGTCGGACCCTGGGGGAATAT CCGGTGTACACGATGGAACCCTTTTGGCGGCCGGCCGCGGGTAATTGGGA CGATCTGAACGGAAGGGCGCTGGAGCTCGTGATGATTGACGTGTCTCTCC ACATAGAGGAGGTAAGTCTGCATTTGGTCAGGTGGCTGGGAGTGTGATTG AATGTTGGTCGACAATCACACGAAACACCAGTGAACCACAACACAGGTCA AGATATTGGAATAGGGAGCACTGGGCCATCACAAAAAAGAAACGATGTAT TGACGCGAAGAGCACATCTAATGTTGATGATTTAATACTGTTGTCCGAAA ACACTGTCAATGTCACCATGCAGCAGGCACTCTGACTCATCAGCGGTAGA TGGAAGTTCTCTTTGTAACCTTCTGCCTCTGCTAACTTTCTTGAAACGGT ATCCGTCGTTGCGTTTCTGTTCCTAGTTGGGCATCTGCACTGCTGACGGC AGCCTTGGATTGAGCGCGTACGAGAACGTTGAGCGTTTCTTCAGGGAACC CGCTACACACTGCATGCAATATGGAAGACTGGGCAACGAATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig185:12238..16430+

>mRNA_Ecto-sp13_S_contig185.5774.1 ID=mRNA_Ecto-sp13_S_contig185.5774.1|Name=mRNA_Ecto-sp13_S_contig185.5774.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1965bp|location=Sequence derived from alignment at Ecto-sp13_S_contig185:12238..16430+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTACAGAAATACGAGATCCGTGGGGAGGACAGGGCAGCTAACGAACTCCA
CTTAAAGCTAGAGGCAATGCCTTCTGCTGGGAGACGGCAGACGAGGAAAA
GGGGCAGAAATTACGTCCCGAAGTTTGTCGTTGCTCTGCTGGCACCTGCT
GATCTGTCCGTTGCCTTTCGTGGTGCAAGTACCAACAAACAAGATGGCCG
TGGTCTAGCTGGAGCTGGTGCTGTGCGTTGTCGAGTGGCTGTATGCTTGT
CTGGGGCCGTCAGATCGTTCGTACACCCTGCAGTACACAGATCCATCAAG
AGCAATCTGATCGAGTCGATCGAGGCGGACGGATGTGCAGTGGATGTGTT
CGCCTACGCCACGCGAGAAGACACGGTGCCGAGACACAAACAGAGGGAGA
ACTCAGATTTCACGCCGAATTCATCCGACATCGAGACGGCCATGGCAACC
CTAGCGCCGACCAGGCTTGTTTGGCACCAAGAACAGGCCGGCATCATCCC
CAGCTGTTGCGCTCAAGCAACGTCATCAGCAGAAAGTGGCGGAGATGAGG
CATGGTACACGACGGAAGCAGTTTCTGGCGAAGATGCCAGCGGTCTCGGC
AATGGTGTTTGGAGGCCGCCACCATGGCAGGTTTACAGAGCCGATGCTAG
TCGAAACCTCTACTGGCAATTGTACAAGTCGCTTTCGGCCTACCGCATGG
CACTTCGGGAAGAGAAGCGAAAAGGAAACGGTTTTGCATACGACTGGATC
ATTCGGAGTCGATTCGACGTGGCCTGGATCCGTCCCCTCCCAGCGCTACG
TTCATTTTCTCGGGAAGCGGTATGGCTTGGCCGACACTATTGGCCAGTAT
CAGACCACTTCGCCCTGGTACCGCGTGCTTTCTCAGATCGATTTTTTACG
GCCGTTAAGACCTTCTACACTTGTGACGGTCAGTCATGGCCACCCACGGT
ATCGTGGTGGCAACCTGAGTGCTCTGGAGGTTTCGACGAGAGCGTTCTTT
TTCGGCACCTCCACGCCTCAAACATACCGTTTCGGTACTACTTCAACTTC
GAGTACGTCATCACGCGAGGGGAGCTTGGTGGGAAGTGCCACCTAGGGGA
AACATTGCACTCCGAATCATGCAGCATTTTGAAGCTTTGGAATGCGTTTC
AGTCGTCATACAACAGGGAAGACTGCATAGAGGCAGTCGCGGAGTGGGCA
AACCTCCGTTGCCGGGCTCTCCTACCTGCCGAGGGGATGAGCGACCCTCG
AAGGACACAAGCAGTTATAGACCCACATCCTCGAGCATGGCAAGCATTCA
TCGCAAGCCAATCTCTTGAACCTACTTCGGTGGCGAAATCGTCTGCAACA
ACAGCGGCGGCAGCAGCCGCGGCAGAAAACACACCGCCCACGTTAGAAGG
GACTTCGTTCGCCGGAGGCTCTCTTAGGCCCACCTCCGTTCCCCACATTG
ATGAAGTGAACCGTGCCCGGTTGAAGCTGGTCGCCCTCAGAGACGCCCTG
GTGATGCCCCCTCGCTCGCCTCTACCTGACAACGATGTCGAGAGGGATCC
ATCAGGCGACTTCATGGCTTATGATGGAAGGAACCCGCTCCCGCTATGGT
CAATATATTCGCATAACCAATGCCCTCTGACGGAGAAGCACAAGGGTCTG
GTCCCGCACGTCGTGTTGTACTACACCATGGGAGCAACCCTCGTTCGAGA
ACTAGCACAGGTTATCAGGTGCTTCGTGCATCACGAGATTGAAACAACGT
CGGAAAATGCTCCAATGGCTGACTTCCAGGGAAACTCGTGCGAGGGCACC
AGGGCGCTGGAGCTCGTGATGATTGACGTGTCTCTCCACATAGAGGAGTT
GGGCATCTGCACTGCTGACGGCAGCCTTGGATTGAGCGCGTACGAGAACG
TTGAGCGTTTCTTCAGGGAACCCGCTACACACTGCATGCAATATGGAAGA
CTGGGCAACGAATGA
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