mRNA_Ecto-sp13_S_contig185.5774.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig185.5774.1 vs. uniprot
Match: D7FK46_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK46_ECTSI) HSP 1 Score: 627 bits (1618), Expect = 8.970e-218 Identity = 334/585 (57.09%), Postives = 399/585 (68.21%), Query Frame = 1
Query: 241 VCLSGAVRSFVHPAVHRSIKSNLIESIEADGCAVDVFAYATREDTVPRHKQRENSDFTPNSSDIETAMATLAPTRLVWHQEQAGIIPSCCAQATSSAESGGDEA---WYTTEAVSGEDASGLGNGVWRPPPWQVYRADASRNLYWQLYKSLSAYRMALREEKRKGNGFAYDWIIRSRFDVAWIRPLPALRSFSREAVWLGRHYWPVSDHFALVPRAFSDRFFTAVKTFYTCDGQSWPPTVSWWQPECSG-GFDESVLFRHLHASNIPFRYYFNFEYVITRGELGGKCHLGETLHSESCSILKLWNAFQSSYNREDCIEAVAEWANLRCRALLPAEGMSDPRRTQAVIDPHPRAWQAFI-ASQSLEPTSVAKSSAXXXXXXXXXENTPPTLEGTSFAGGSLRPTSVPHIDEVNRARLKLVALRDALVMPPRSPL-PDNDVE-RDPSGDFMAYD---GRNPLPLWSIYSHNQCPLTE-KHKGLVPHVVLYYTMGATLVRELAQVIRCFVHHEIETTSENAPMADFQGNSCEGTRALELVMIDVSLHIEELGICTADGSLGLSAYENVERFFREPATHCMQYGRLGNE 1962
+C SGA+RSFVHPAVHRSI++NLIESI+ADGC VDVFAY TREDTV + KQ EN +FTPNSSD+E A+A L PTRL+WHQ+QAGIIP+ CA + ++ A WY W Q Y +ASR+LYWQLYKSL+AYRMALREEKR G+GF YDW+IR R DVAW RPLP LRSFSR+AVW GRHYWP+SDHFALVPR FSDRFF+AVKTFY CDG+SWPP SWWQPEC+ GF+ESVLFRHLHAS IP+R+Y F+++ITRG +GG C LG ++SE CS+L LWNA Q ++R+ C+EA+AE+++LRCR L PA GM D RR A++DP PRAW+A + +S LEP + EG S TSV ++V+ ARLKLV LRDAL P SPL P ++ R+ + + D G PLW I+S CPL E +H G PHVVLYYTMG LVREL Q ++CFV I T D +SC G R+L+LVMIDVSLH EELGICTADGSLGLSA E V RFF PA HC YGRL +E
Sbjct: 1 MCFSGAIRSFVHPAVHRSIRTNLIESIKADGCEVDVFAYVTREDTVVKAKQVENPEFTPNSSDVEVALAVLEPTRLLWHQDQAGIIPNGCAGVNNRTDASRHSARHLWY-----------------WE----QRYSPEASRSLYWQLYKSLAAYRMALREEKRIGSGFTYDWVIRGRLDVAWARPLPPLRSFSRQAVWFGRHYWPMSDHFALVPRKFSDRFFSAVKTFYACDGRSWPPPSSWWQPECATIGFEESVLFRHLHASEIPYRFYPLFDFIITRGVIGGVCKLGFIVYSEVCSLLGLWNALQPPFSRDHCLEALAEYSDLRCRTLFPARGMEDERRVDAILDPEPRAWEALLDSSPLLEPIPAVAAPGPLGR----------ATEGDSSDASIY--TSVAKAEDVDSARLKLVLLRDALQAP--SPLEPHYEMALREEAKERSLLDRWGGWKTHPLWWIHSIMGCPLAEPQHPGPSPHVVLYYTMGEPLVRELVQSVKCFVSRIIGETQVGG--GDTNQSSCNGVRSLDLVMIDVSLHTEELGICTADGSLGLSASEQVSRFFDNPAAHCAGYGRLDSE 548
BLAST of mRNA_Ecto-sp13_S_contig185.5774.1 vs. uniprot
Match: D7G5E2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5E2_ECTSI) HSP 1 Score: 296 bits (758), Expect = 1.040e-83 Identity = 219/674 (32.49%), Postives = 308/674 (45.70%), Query Frame = 1
Query: 229 CRVAVCLSGAVRSFVHPAVHRSIKSNLIESIEADGCAVDVFAYATREDTVPRHKQRENSDFTPNSSDIETAMATLAPTRLVWHQEQAGIIP-SCCAQATSSAESGGDEAWYTTEA-------------VSGEDASGL--GNGVWRP--PPWQVYRADASRNLYWQLYKSLSAYRMALREEKRKGNGFA-----------YDWIIRSRFDVAWIRPLPALRSFSREAVWLGRHYWPVSDHFALVPRAFSDRFFTAVKTFYTCD---GQSWPPTVSWWQPEC---------------SGG---------------------------------------FDESVLFRHLHASNIPFRYYFNFEYVIT-------------RGELGGKCHLGETLHSESCSILKLWNAFQSSYNREDCIEAVAEWANLRCRALLPAEGMSDPRRTQAVIDPHPRAWQAFIASQSLEP--TSVAKSSAXXXXXXXXXENTPPTLEGTSFAGGSLRPTSVPHIDE--VNRARLKLVALRDALVMP--------------------PRSPLPDNDVERDPSGDFMAY---DGRNPLPL----WSIYSHNQCPLTEKHKGLVPHVVLYYTMGATLVRELAQVIRCFVHHEIE-TTSENAPMADF--QGNSCEGTRALELVMIDVSLHIEEL 1851
C VAV +SG VRSFV P +HRS + +++E+I+A+GC VDVF YA+ D +Q + +IE M L+PT+LVWHQEQAGIIP SC AT+ GGDEA ++ A V G++ S G+ P PP + + S YWQLY+SL+AYR+A++ E K A YDWI+ +RFDVAW + LP+ R+FSR+ VW WP+S +FALVPRAFSDRFF+AV+ F+ CD G SWPP +WWQP+C SGG F ES+++RHLHAS +P+R Y FEY G+ C + C +L F +Y E+C A++EW++L CR E +T+ S++L+P T+ +SS +N G L + E + RA L ALRDA+++ P ++ ++ GD A G +P WS++S C L E + G PH++ + + + +RELA +C H IE T+ ++ DF C +R+LELVMIDVSLH E+
Sbjct: 39 CAVAVSISGDVRSFVDPVLHRSFRRHVVEAIKAEGCTVDVFVYASLGDEDLLVEQDAET-----IRNIEATMEFLSPTQLVWHQEQAGIIPNSCRPTATTPTTGGGDEAQPSSFAESSVPNARPTGGNVGGDNRSNQPRGHASKEPSKPPSREQFSTRSERFYWQLYESLAAYRLAVQREDEKEKEAATIPTSSPASSKYDWIVTTRFDVAWKKSLPSFRAFSRDVVWFAAKSWPMSTNFALVPRAFSDRFFSAVEAFHACDDGNGPSWPPGEAWWQPDCGEHGQENGNSSGNVHSGGNLHHSPRSGPAGGGGGFELRGSDDGSIFHDNRGGGRGEGFGESIVYRHLHASGVPYRPYPMFEYYTVPPYVRDGDADGDAAGDTRSGCETSTPDYFTGCVLLGTVGLFSQAYTSEECATALSEWSSLHCRTSTHLEATGPGHQTER-------------GSENLDPDLTTWPRSSVGVYPDETETDN-----------GDVLGAAEADRVQEEDLRRAWFNLAALRDAVIVAADDGSEEVMHGSSNAGEEDTPSGETSRRNLGKEDGGDHDAAPKPSGSSPTRQTNRSWSVHSQGGCRLNE-YPGRAPHIIRHSSTDSHRMRELALATKCLAHRFIEGATAWSSVNEDFGFDATVCASSRSLELVMIDVSLHSAEV 682
BLAST of mRNA_Ecto-sp13_S_contig185.5774.1 vs. uniprot
Match: A0A6H5KVJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVJ6_9PHAE) HSP 1 Score: 281 bits (718), Expect = 9.860e-82 Identity = 209/651 (32.10%), Postives = 297/651 (45.62%), Query Frame = 1
Query: 229 CRVAVCLSGAVRSFVHPAVHRSIKSNLIESIEADGCAVDVFAYATREDTVPRHKQRENSDFTPNSSDIETAMATLAPTRLVWHQEQAGIIP-SCCAQATSSAESGGDEA----WYTTEAVSGEDASGLGNGVWRP-------------PPWQVYRADASRNLYWQLYKSLSAYRMALREEKRKGNGFA-----------YDWIIRSRFDVAWIRPLPALRSFSREAVWLGRHYWPVSDHFALVPRAFSDRFFTAVKTFYTCD---GQSWPPTVSWWQPEC---------------SGG---------------------------------------FDESVLFRHLHASNIPFRYYFNFEYV-----ITRGELGGK--------CHLGETLHSESCSILKLWNAFQSSYNREDCIEAVAEWANLRCRALLPAEGMSDPRRTQAV---IDPHPRAWQAFIASQSLEPTSVAKSSAXXXXXXXXXENTPPTLEGTSFAGGSLRPTSVPHIDEVNRARLKLVALRDALVMPPRSPLPDNDVERDPSGDFMAYDGRNPLP--------------------------------LWSIYSHNQCPLTEKHKGLVPHVVLYYTMGATLVRELAQVIRCFVHHEIE-TTSENAPMADF 1776
C VAV +SG VRSFV P VH S + +++E+I+A+GC VDVF YA+ D +Q + +IE M L+PT+LVWHQEQAGIIP SC AT+ GGDEA + ++ A + + G G R PP + + S YWQLY+SL+AYR+A++ E K A YDWI+ +RFDVAW +P+LR+FSR+ VW WP+S +FALVPRAFSDRFF+AV+ F+ CD G SWPP +WWQP+C SGG F ES+++RHLHAS +P+R Y FEY + G++ G C + + C +L F +Y E C A++EW++L CRA E S R+T+ ++P+ +AW +SV SS T G F G+ V +++ RA LVALRDA+++ D+D E G A + P+ WS++S C L E + G PH++ + + + +RELA +C H +E T+ ++ + DF
Sbjct: 38 CAVAVSISGDVRSFVDPVVHLSFQRHVVEAIKAEGCTVDVFVYASLGDEDLLEEQDAET-----IRNIEATMEFLSPTQLVWHQEQAGIIPNSCRPTATTPTTGGGDEARPSSFASSNAANAKPKGGNVGGDNRSNQPRGHVSKEPSKPPGREQFSTRSERFYWQLYESLAAYRLAVQREDEKEKEAATIPTSSPASSKYDWIVTTRFDVAWKNSVPSLRAFSRDVVWFAAKSWPMSTNFALVPRAFSDRFFSAVEAFHACDDGNGPSWPPGEAWWQPDCGEDGQENENGSGSVHSGGNLHHSPRGGPAGGGGDFDLRDWDDGSIFHDNRGGSRGEGFGESIVYRHLHASGVPYRPYPMFEYYAVPPYVRDGDVDGGAARDTRSGCEASTSDYLTGCVLLGTVGLFSPAYTSEACATALSEWSSLHCRASTQPEATSTGRQTERASKNLNPYLKAWPR---------SSVGVSSGEAK-----------THRGDVF--GTAEEDRVQE-EDLKRAWSNLVALRDAVIL-----AADDDSEEATHGSSNAGEDDTPIREASRRHLGKDDGGDHDAAPKPSNSSPTRQTNRSWSVHSQWGCRLNE-YPGRAPHIIRHSSTDSHRMRELALATKCLAHRFMEGATAWSSVIEDF 654
BLAST of mRNA_Ecto-sp13_S_contig185.5774.1 vs. uniprot
Match: A0A7S2WLT0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WLT0_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 8.180e-15 Identity = 88/283 (31.10%), Postives = 126/283 (44.52%), Query Frame = 1
Query: 229 CRVAVCLSGAVRSFVHPAVHRSIKSNLIESIEADGCAVDVFAYATREDTVPRHKQRENSDFTPNSSDIETAMATL--------APTRLVWHQEQAGIIPSCCAQATSSAESGGDEAWY---TTEAVSGEDASGLGNGVWRPPPW-QVYRADASRNLYWQLYKSLSA-YRMALREEKRKGNGFAYDWIIRSRFDVAWIRPLPALRSFSREAVWLGRHYWPVSDHFALVPRAFSDRFFTAVKTFYTCDGQSWPPTVSWWQPEC---SGGFDESVLFRHLHASNIP 1029
CRVAVC+SG R+F HP V ++ NL+ ++E C VD+F D V + S T S E + L + RLV E +P +G A Y T + A+G G+ R P +V A A+ W +S+S+ + LREE+ + Y W+IR+RFD++++ PLP L S SR+AV + P+SD FA+VPRA+ D +F A W W+ G E VL L A+ P
Sbjct: 476 CRVAVCMSGQWRTFAHPLVRQTFHQNLLGALETS-CEVDLFLCIKPSDQVAGRRNEHFSRTTAAPSTREAILEVLRAELPDVLSRVRLVLADEP---LPQ---------SNGQTSALYPLDTGTSFPKACANGGGDCCSRSQPSAEVQSALAAA---WPSLESVSSCLDLVLREERLRQQD--YHWVIRTRFDLSYLVPLPPLASLSRKAVHVPYSSLPISDTFAVVPRAYVDAYFMA-------SDLCWRGACHRWRARDFPKGAGSTELVLLAALRAAEAP 733
BLAST of mRNA_Ecto-sp13_S_contig185.5774.1 vs. uniprot
Match: A0A7S4A1A7_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A1A7_9STRA) HSP 1 Score: 86.3 bits (212), Expect = 3.280e-14 Identity = 95/358 (26.54%), Postives = 137/358 (38.27%), Query Frame = 1
Query: 238 AVCLSGAVRSFVHPAVHRSIKSNLIESIEADGCA-VDVFAYATREDTVPRHKQRENSDFTPNSSDIETAMATLAPTRLVWHQEQAGIIPSCCAQATSSAESGGDEAWYTTEAVSGEDASGLGNGVWRPPPWQVYRADASRNLYWQLYKSLSAYRMALREEKRKGNGFAYDWIIRSRFDVAWIRPLPALRSFSREAVWLGRHYWPVSDHFALVPRAFSDRFFTAVKTFYTCDGQSWPPTVSWWQPECSGGFD-ESVLFRHLHASNIPFRYYFNFEYVITRGELGGKCHLGETLHSESCSILKLWNAFQSSYNREDCIEAVAEWANLRCRALLPAEGMSDPRRTQAVIDPHPRAWQAFIA 1305
AVC +G + P V R K +++++ GCA VD F Y T ++T +QR++ PN+S IE H P G DE +DA QL K+ + Y AL E YDW++R+R D+AW+ +P ++S + V++ +H WPV D F + P + F AV GQ S Q E G ES L RHL + IP + Y F +V R GG C +H+ +C + A ++C AV CR P G + +D AW+A A
Sbjct: 32 AVCFAGNAVGLMQPQVRRFAKERMVDAL---GCAAVDSFFYLTLDNT----QQRDDLLPAPNAS-IEAV-----------HAAAREFNPVSVTMRVRDDSLGSDE----------DDAHA------------------------QLSKAAACY--ALVEASELAARKRYDWVVRTRPDLAWVAAVPPVKSLYEDRVYVSQHSWPVGDAFFVAPGKLAREVFRAVDAL----GQDSHCDAS--QVEKIGHLAAESALHRHLASRKIPTQLYDGFAFVAARWREGGDCRTLGQVHASACVL-----AANEGLVSDECQAAVTRPYEEGCRRDFPPLG--GEASSAEALDFDDAAWRAAAA 321
BLAST of mRNA_Ecto-sp13_S_contig185.5774.1 vs. uniprot
Match: A0A8J2T2U1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T2U1_9STRA) HSP 1 Score: 70.1 bits (170), Expect = 6.900e-9 Identity = 78/286 (27.27%), Postives = 113/286 (39.51%), Query Frame = 1
Query: 253 GAVRSFVHPAVHRSIKSNLIESIEADGCAVDVFAYATREDTVPRHKQRENSDFTPNSSDIETAMATLAPTRLVWHQEQAGIIPSCCAQATSSAESGGDEAWYTTEAVSGEDASGLGNGVWRPPPWQVYR-----ADASRNLYWQLYKSLSAYRMALREEKRKGNGFAYDWIIRSRFDVAWIRPLPALRSFSREAVWLGRHYW-PVSDHFALVPRAFSDRFFTAVKTFYTCDGQS---WPPTVSWW-------QPECSGGF---------DESVLFRHLHASNIPFR 1035
G R+F PAVH +IK+NLI+ I D VF Y + + P S + A+ T + WH E + C+Q D GLG PP ++ Y+ D +RN+Y K A+ M LREE ++G Y+W+ R RFD AW PL V+ W V+D FA R+ + ++F+A + TC + W T+ + CS G E+ L+RHL N+ R
Sbjct: 23 GHARTFAEPAVHSTIKANLIDPIGGD-----VFWYLSEK---PGWDAATESVLRDLFQPVAVAVVTSSEEG-EWHDEASTRWHGNCSQPPL------------------PDLDGLGV----PPTFKFYKDPARAVDVARNVY---AKWSRAWEMVLREEAQRGK--EYEWVARCRFDAAWYAPLQLPTEIG--VVYAPIQTWNAVNDQFAFCERSVAQQYFSASRILDTCGHDNLPRWYSTIEHGMAPTCLNEHTCSPGSVRGDPVVWQPETFLWRHLVLENVTLR 270
BLAST of mRNA_Ecto-sp13_S_contig185.5774.1 vs. uniprot
Match: A0A7S2WMN0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WMN0_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 1.840e-7 Identity = 41/114 (35.96%), Postives = 58/114 (50.88%), Query Frame = 1
Query: 697 MALREEKRKGNGFAYDWIIRSRFDVAWIRPLPALRSFSREAVWLGRHYWPVSDHFALVPRAFSDRFFTAVKTFYTCDGQSWPPTVSWWQPEC---SGGFDESVLFRHLHASNIP 1029
+ LREE+ + Y W+IR+RFD++++ PLP L S SR+AV + P+SD FA+VPRA+ D +F A W W+ G E VL L A+ P
Sbjct: 9 LVLREERLRQQD--YHWVIRTRFDLSYLVPLPPLASLSRKAVHVPYSSLPISDTFAVVPRAYVDAYFMA-------SDLCWRGACHRWRARDFPKGAGSTELVLLAALRAAEAP 113 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig185.5774.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig185.5774.1 >prot_Ecto-sp13_S_contig185.5774.1 ID=prot_Ecto-sp13_S_contig185.5774.1|Name=mRNA_Ecto-sp13_S_contig185.5774.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=655bp LQKYEIRGEDRAANELHLKLEAMPSAGRRQTRKRGRNYVPKFVVALLAPAback to top mRNA from alignment at Ecto-sp13_S_contig185:12238..16430+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig185.5774.1 ID=mRNA_Ecto-sp13_S_contig185.5774.1|Name=mRNA_Ecto-sp13_S_contig185.5774.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4193bp|location=Sequence derived from alignment at Ecto-sp13_S_contig185:12238..16430+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig185:12238..16430+ >mRNA_Ecto-sp13_S_contig185.5774.1 ID=mRNA_Ecto-sp13_S_contig185.5774.1|Name=mRNA_Ecto-sp13_S_contig185.5774.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1965bp|location=Sequence derived from alignment at Ecto-sp13_S_contig185:12238..16430+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |