mRNA_Ecto-sp13_S_contig18482.5763.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18482.5763.1
Unique NamemRNA_Ecto-sp13_S_contig18482.5763.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18482.5763.1 vs. uniprot
Match: D7FHZ2_ECTSI (C2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHZ2_ECTSI)

HSP 1 Score: 323 bits (828), Expect = 1.100e-102
Identity = 192/214 (89.72%), Postives = 196/214 (91.59%), Query Frame = 1 
Query:    1 FSVSSGAGQTRELVVKQAERVARHMLVAGISKLEERISDDEREYEAKAAERQKEXXXXXXXXXEAAIQNVVSGASSKLSGNLFDRMQGLAKLHESAKSAMKFELGQLANVGKGAGKAALANGGI---VHRHKTLKDDDLVPDDSVDNGEQEEVEDVVGGEGLDLSYLWAVDAGKVLSRSKKSTSDTEDSSHIAKGGTTTDSEVKNQYGRAGYDK 633
            FSVSSGAGQTRELVVKQAERVARH LVA ISKLEERISDDEREYEAKAAERQKEXXXXXXXXXEAAIQNVVSGASSKLSGNLFDRMQGLAKLHESAKSAMKFELGQLANVGKGAGKA  ANGG    VHRHKTLKDDDLVPDDSVDNGEQEEVEDV+GGEGLDLSYLW VDAGKVLSRS KSTSDTE SSH AKGGTTTDSE + +  R G D+
Sbjct:    3 FSVSSGAGQTRELVVKQAERVARHTLVADISKLEERISDDEREYEAKAAERQKEXXXXXXXXXEAAIQNVVSGASSKLSGNLFDRMQGLAKLHESAKSAMKFELGQLANVGKGAGKATPANGGSSTSVHRHKTLKDDDLVPDDSVDNGEQEEVEDVLGGEGLDLSYLWVVDAGKVLSRSNKSTSDTEGSSHTAKGGTTTDSEQEAEQRRPGDDR 216
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18482.5763.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FHZ2_ECTSI1.100e-10289.72C2 domain-containing protein n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18482contigEcto-sp13_S_contig18482:1037..3227 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size633
Hectar predicted targeting categoryother localisation
Exons4
Cds size633
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462949.3752563-CDS-Ecto-sp13_S_contig18482:1036..11541681462949.3752563-CDS-Ecto-sp13_S_contig18482:1036..1154Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18482 1037..1154 +
1681462949.3860724-CDS-Ecto-sp13_S_contig18482:1551..16641681462949.3860724-CDS-Ecto-sp13_S_contig18482:1551..1664Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18482 1552..1664 +
1681462949.3958328-CDS-Ecto-sp13_S_contig18482:2008..21451681462949.3958328-CDS-Ecto-sp13_S_contig18482:2008..2145Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18482 2009..2145 +
1681462949.406347-CDS-Ecto-sp13_S_contig18482:2962..32271681462949.406347-CDS-Ecto-sp13_S_contig18482:2962..3227Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18482 2963..3227 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18482.5763.1prot_Ecto-sp13_S_contig18482.5763.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18482 1037..3227 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18482.5763.1

>prot_Ecto-sp13_S_contig18482.5763.1 ID=prot_Ecto-sp13_S_contig18482.5763.1|Name=mRNA_Ecto-sp13_S_contig18482.5763.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=211bp
FSVSSGAGQTRELVVKQAERVARHMLVAGISKLEERISDDEREYEAKAAE
RQKEQRRKEQELKEAAIQNVVSGASSKLSGNLFDRMQGLAKLHESAKSAM
KFELGQLANVGKGAGKAALANGGIVHRHKTLKDDDLVPDDSVDNGEQEEV
EDVVGGEGLDLSYLWAVDAGKVLSRSKKSTSDTEDSSHIAKGGTTTDSEV
KNQYGRAGYDK
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mRNA from alignment at Ecto-sp13_S_contig18482:1037..3227+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18482.5763.1 ID=mRNA_Ecto-sp13_S_contig18482.5763.1|Name=mRNA_Ecto-sp13_S_contig18482.5763.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2191bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18482:1037..3227+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTCTCTGTATCGTCTGGAGCAGGTCAAACGCGCGAACTTGTCGTCAAGCA
AGCGGAGAGGGTTGCGCGCCACATGCTGGTTGCGGGTATCAGCAAGCTCG
AGGAAAGAATTTCCGACGGTAAGTCTATTGCATCATAATCACGTGTGTAG
ACTGCATGTTTACATGTACATTTCCCCGATCTTCGAGTCAACAGAGCTTA
GTTATTGCTCCACTGCTGCTGTTGTTTGAGTTGACCCCCCTGCGGACGAC
AAGCCCAATGAAACAAAAACACACGAAGAGTCCGCGACTGTCCACCGGGG
CCTTTTCAGTCAGGTGTAAAGTGCAATATCGACAATAACCCAACCGTTAT
TTACTTCGCCTTCCGACACCAGGTTTGGTGCGCTGTGGACAGGTGTGACG
AAATGCTTGCAAACCTATTTTAGTCCTTGCTACGAACTTTGCTCTCTTCT
AAAACCTTCCCCTTCCTGTCGGAAACTTGGTGCTCCGTGCGAAACCTATT
CATCGCGCCTACAAGACGAACGCGAATACGAAGCCAAGGCCGCCGAACGA
CAGAAGGAGCAGCGTCGAAAGGAACAAGAATTGAAGGAGGCGGCCATACA
GAATGTCGTGTCCGGAGCTAGCAGCAAGGTGACTAGTTTGGTTAAACCAG
CTCTACGTTGTCGTCTGCGCTCTTAAAGCGGCCTGCTTTGTGGCACTTGC
GCGGTGGTACACAGAAGTAATGAGTGCAAACAATCATTATATAATCGTCA
CCTCGCAACAGGATACAGAGACAAGAGACAAGAGCATCCCGTAGGTAAAT
AGAATTGCAGATCAAACGGAAAACAATCAAATTGAGCTATGATGTGGATG
AGTCCTGGCTGTCTGTGTGAACGTGGTGGACACAAAATAGACGTGGTTTC
ACAAGCAAATCCTTTGAACGCCGCATGGATTGTCGCCTGACAAAACTCTC
CAACGGAATCTGCCCTCCCCAGCTTTCAGGCAACTTGTTCGACAGGATGC
AGGGCCTCGCAAAGCTTCATGAATCTGCCAAATCGGCCATGAAGTTCGAA
CTTGGGCAACTGGCCAACGTAGGAAAGGGCGCGGGCAAGGCCGCGCTAGC
AAACGGAGGGTCTCCGACCTCAGGTGCACTCAGACGAACTCCCGTAACAC
AATGAAATATATCAGGACGAGGGGATGATGCCATCTCGAAGACGTCCATA
TGCATAAGAACAGCCAAGGATATCAGCTGAGCAATAGACTTTTGTACAAC
CTGGGGACTTCGAGAACCATCAAAAGGCATTTCGAGCATAAGTCGGATCG
CTAGAATATCCAACGCAACGAAAAGAAGATGCCAAGACGTACATATCGCA
AAGAAAGACGCACAAAAATGTCTCGATCGATGAAAACCTCTTCGCGGGTC
CGCTCTACGCAGCGTCCGCCTCCTTCTTGACCCGTATCTCTGGCTACGAT
CCCCGACGCGACTTCAATACCTCCGTTCACCTGATGCACACAATCCGCCT
CTGCTGCCCGTAGGTGCGAGCGAGCTGAAAATGCCGCTGCCGGGGGCATC
GTCGGTCGTAGTGAAGGTGGTGCATCCCGCCAACGTATCCGTCCTGAGAG
CCAAGCTTCATCGAAGTCTGGGCATCCCCCTCGAAGACGTCAGGTATTGA
GAGGGAAGCTGGTGCTCGGACGACGTTACAGGATTTGAACCTCTATGTGT
GTGTGCTGGAGAGACGTAGAGCAGGCGTTGGTGGTGTAGATGATGCACAA
CGTCCTCGTGTGCCGACGAAATATATTTTGGTTTTCAACCTCTCGAATGT
AGGATAGCTGTTGCTATGATGGGGCATGCAAAACGAATGGGAGCATCCGA
AGGACCCCCTCCTCCTATCTCGACCTTCTGAATACACTTTCACCACTCGC
CAAAAACTTGCGCCCCCCTTCTCCAGGATTGTGCATCGCCACAAAACGCT
CAAAGACGACGATCTAGTCCCGGACGATTCGGTGGACAACGGAGAGCAAG
AAGAAGTAGAAGACGTGGTGGGCGGGGAAGGTCTTGACTTGAGCTACCTC
TGGGCGGTGGACGCGGGAAAAGTGCTGTCTCGATCGAAGAAATCCACCTC
CGACACGGAGGACTCATCCCACATCGCGAAAGGGGGCACTACTACCGACT
CTGAGGTGAAGAATCAATACGGGCGGGCGGGGTACGACAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18482:1037..3227+

>mRNA_Ecto-sp13_S_contig18482.5763.1 ID=mRNA_Ecto-sp13_S_contig18482.5763.1|Name=mRNA_Ecto-sp13_S_contig18482.5763.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=633bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18482:1037..3227+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTCTCTGTATCGTCTGGAGCAGGTCAAACGCGCGAACTTGTCGTCAAGCA
AGCGGAGAGGGTTGCGCGCCACATGCTGGTTGCGGGTATCAGCAAGCTCG
AGGAAAGAATTTCCGACGACGAACGCGAATACGAAGCCAAGGCCGCCGAA
CGACAGAAGGAGCAGCGTCGAAAGGAACAAGAATTGAAGGAGGCGGCCAT
ACAGAATGTCGTGTCCGGAGCTAGCAGCAAGCTTTCAGGCAACTTGTTCG
ACAGGATGCAGGGCCTCGCAAAGCTTCATGAATCTGCCAAATCGGCCATG
AAGTTCGAACTTGGGCAACTGGCCAACGTAGGAAAGGGCGCGGGCAAGGC
CGCGCTAGCAAACGGAGGGATTGTGCATCGCCACAAAACGCTCAAAGACG
ACGATCTAGTCCCGGACGATTCGGTGGACAACGGAGAGCAAGAAGAAGTA
GAAGACGTGGTGGGCGGGGAAGGTCTTGACTTGAGCTACCTCTGGGCGGT
GGACGCGGGAAAAGTGCTGTCTCGATCGAAGAAATCCACCTCCGACACGG
AGGACTCATCCCACATCGCGAAAGGGGGCACTACTACCGACTCTGAGGTG
AAGAATCAATACGGGCGGGCGGGGTACGACAAG
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