mRNA_Ecto-sp13_S_contig18462.5756.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18462.5756.1
Unique NamemRNA_Ecto-sp13_S_contig18462.5756.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig18462.5756.1 vs. uniprot
Match: D8LTV2_ECTSI ((R)-citramalate synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTV2_ECTSI)

HSP 1 Score: 638 bits (1646), Expect = 3.040e-226
Identity = 333/350 (95.14%), Postives = 336/350 (96.00%), Query Frame = 1
Query:    1 ADIPQGTVNGIGERTGNANLMTIIPTLQLKMGMTGVGEHLTNLTALSRFTDEQARHIYLFPAIKRFNMAHTSGAPFTGMSAFAHKGGIHVSAVNKIPDSYQHIDPAQVGNKKRVLVSELSGQSNILSKVEDSGMASKTELKASKVWRERMGQVLKTVKRLETEGYSYEGADASVNLLVRRTMSGYVPPFKLLDYLVQIWDSDRTPGGLEFPSGPTTARATVKVRVPSIDSEAELGIEGENPGVRLEVAEGNGPVDALAKGLFRALLPTFPSLQSVKLSDYKVRILDQESATQAKTRVLIEFYEKSSDVGWSTVGVNTNIISASMSALMDGFEYALVEFGQSCSIDAGTRS 1050
            AD+ QGTVNGIGERTGNANLMTIIPTLQLKMGMTGVGEHLTNLTALSRFTDEQ            FNMAHTSGAPFTG+SAFAHKGGIHVSAVNKIPDSYQHIDPAQVGN KRVLVSELSGQSNILSKVEDSGMASKTELKASKVWRERMGQVLKTVKRLETEGYSYEGADASVNLLVRRTMSGYVPPFKLLDYLVQIWDSDRTPGGLEFPSGPTTARATVKVRVPS+DSEAELGIEGENPGVRLEVAEGNGPVDALAKGLFRALLPTFPSLQSVKLSDYKVRILDQESATQAKTRVLIEFYEKSSDVGWSTVGVNTNIISASMSALMDGFEYALVEFGQSCSIDAGTRS
Sbjct:  269 ADVVQGTVNGIGERTGNANLMTIIPTLQLKMGMTGVGEHLTNLTALSRFTDEQ------------FNMAHTSGAPFTGISAFAHKGGIHVSAVNKIPDSYQHIDPAQVGNMKRVLVSELSGQSNILSKVEDSGMASKTELKASKVWRERMGQVLKTVKRLETEGYSYEGADASVNLLVRRTMSGYVPPFKLLDYLVQIWDSDRTPGGLEFPSGPTTARATVKVRVPSMDSEAELGIEGENPGVRLEVAEGNGPVDALAKGLFRALLPTFPSLQSVKLSDYKVRILDQESATQAKTRVLIEFYEKSSDVGWSTVGVNTNIISASMSALMDGFEYALVEFGQSCSIDAGTRS 606          
BLAST of mRNA_Ecto-sp13_S_contig18462.5756.1 vs. uniprot
Match: A0A836CCG4_9STRA ((R)-citramalate synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCG4_9STRA)

HSP 1 Score: 330 bits (847), Expect = 1.520e-104
Identity = 210/392 (53.57%), Postives = 243/392 (61.99%), Query Frame = 1
Query:   37 ERTGNANLMTIIPTLQLKMGMTGVGEHLTNLTALSRFTDEQARHIYLFPAIKRFNMAHTSGAPFTGMSAFAHKGGIHVSAVNKIPDSYQHIDPAQVGNKKRVLVSELSGQSNILSKVEDSGMASKTELKASKVWRERMGQVLKTVKRLETEGYSYEGADASVNLL------------------VRRTMSGYVPPFKLLDYLVQIWD---SDR-------TPGGLEFPSGPTTARATVKVRVPS----IDSEAELGIEGENPGVRLEVAEGNGPVDALAKGLFRALLPTFPSLQSVKLSDYK---------------------------VRILDQESATQAKTRVLIEFYEKSSDVGWSTVGVNTNIISASMSALMDGFEYALVEFGQSCSID 1035
            ERTGNANL +I+PTLQLKMG  GVGE L  LTAL RF DEQ             N    S AP+ G SAFAHKGGIHVSAVNKIPDSYQHIDPA VGN +R LVSELSG+SNILSKVE+ GM SK E  +S  W++RM +VL  VK LE  G ++EGADA+VNL+                  +RR M GY  PF+L+DY V   D   SD        TPG +  PS     RATVKV++P+    ++S A     G+    RLE AEGNGPV+ALAK L +ALLPTFPSLQ V L DYK                           VRILDQESAT A TRV+IEF +   +  W+TVGV+TNIISASM ALMDGFEYALVE+   CS+D
Sbjct:  295 ERTGNANLASIVPTLQLKMGCAGVGERLPELTALCRFVDEQ------------LNRLPDSKAPYVGQSAFAHKGGIHVSAVNKIPDSYQHIDPAAVGNVRRTLVSELSGRSNILSKVEEFGMGSKEEF-SSPEWQDRMNRVLTAVKTLEKRGSTFEGADATVNLIEPLRXXXXXXXXXXXXXMIRRLMPGYTAPFRLMDYTVTAADTMGSDALRGEETGTPGSV-MPS----VRATVKVKLPAGVSQMESLASFWDNGDRT-QRLESAEGNGPVNALAKALNKALLPTFPSLQHVVLKDYKASRRPAQLPELRVFVGEVVQELKFQLKVRILDQESATAANTRVMIEFMDSHHNQQWATVGVDTNIISASMCALMDGFEYALVEYAPCCSLD 667          
BLAST of mRNA_Ecto-sp13_S_contig18462.5756.1 vs. uniprot
Match: A0A7S2UWY3_9STRA ((R)-citramalate synthase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWY3_9STRA)

HSP 1 Score: 306 bits (784), Expect = 1.810e-95
Identity = 182/361 (50.42%), Postives = 243/361 (67.31%), Query Frame = 1
Query:    1 ADIPQGTVNGIGERTGNANLMTIIPTLQLKMGMTGVGEHLTNLTALSRFTDEQARHIYLFPAIKRFNMAHTSGAPFTGMSAFAHKGGIHVSAVNKIPDSYQHIDPAQVGNKKRVLVSELSGQSNILSKVEDSGMASKTELKASKVWRERMGQVLKTVKRLETEGYSYEGADASVNLLVRRTMSGYVPPFKLLDYLVQIWDSD-------RTPGGLEFPSGPTTARATVKVRVPSID-SEAELGIEGENPGVRLEVAEGNGPVDALAKGLFRALLPTFPSLQSVKLSDYKVRILDQ---ESATQAKTRVLIEFYEKSSDVGWSTVGVNTNIISASMSALMDGFEYALVEFGQ-SCSIDAGTR 1047
            A + QGT+NG+GERTGNANL ++IP LQLKMG  GVG+ L +LT++SRF+DE              N +    APF G SAFAHKGGIHVSA+ K P SYQHI+P +VGN KRVLVSEL+G+SNI++KVE+ G+  +       VW+ER  Q+L  VK LE  GY++EGA+ASVNL++RR+   Y PPF + DY++QIWD D         P  +E      +ARATVKV V     +E +L          LEVAEGNGPV+ALA  L + L+PTFP L+ ++LSDYKVRILD    +S T +  RV+++F +KS+   ++TVG ++NIISAS++AL+DG EYAL+  G+ +C++D  T 
Sbjct:  316 ATVVQGTINGLGERTGNANLCSVIPNLQLKMGYHGVGDKLKDLTSVSRFSDEL------------MNRSPNPAAPFVGASAFAHKGGIHVSAIAKNPLSYQHIEPEEVGNLKRVLVSELAGRSNIMTKVEEYGLIGQDS--DLNVWKERSVQILNKVKALEKSGYTFEGAEASVNLMLRRSSDMYTPPFAIQDYMLQIWDQDVDSVMRFSDPSVVEPYYFHGSARATVKVLVMEHTCNEKQL----------LEVAEGNGPVNALANALMKGLVPTFPVLEELELSDYKVRILDMSCGKSGTSSVVRVMMDF-KKSNGDKYTTVGADSNIISASLNALVDGLEYALI--GELNCAVDYDTE 649          
BLAST of mRNA_Ecto-sp13_S_contig18462.5756.1 vs. uniprot
Match: A0A1Z5JTT2_FISSO ((R)-citramalate synthase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JTT2_FISSO)

HSP 1 Score: 302 bits (774), Expect = 2.720e-94
Identity = 176/351 (50.14%), Postives = 232/351 (66.10%), Query Frame = 1
Query:   13 QGTVNGIGERTGNANLMTIIPTLQLKMGMT-GVGEHLTNLTALSRFTDEQARHIYLFPAIKRFNMAHTSGAPFTGMSAFAHKGGIHVSAVNKIPDSYQHIDPAQVGNKKRVLVSELSGQSNILSKVEDSGM-ASKTELKASKVWRERMGQVLKTVKRLETEGYSYEGADASVNLLVRRTMSGYVPPFKLLDYLVQIWDSDRTPG-------GLEFPSGPTTARATVKVRVPSIDSEAELGIEGENPGV--RLEVAEGNGPVDALAKGLFRALLPTFPSLQSVKLSDYKVRILDQESATQAKTRVLIEFYEKSSDVGWSTVGVNTNIISASMSALMDGFEYALVEFGQSCSI 1032
            QGT+NGIGERTGNA+L +IIPTL L MG      + L NLT++SR+ DE              N +    AP+ G+SAFAHKGG+HV+A+ + P SYQHIDPA VGN+ RVL+SELSG+ NILSK+E +G+  S+T         +R   +L  VK LE  GY++EGA+ASV+L++     GY PPF++LDY  Q++DS+           G+   S   TARAT+KVR  S  S+ +       P    RLEV +GNGPVDALA  L RA+ P+ P L++++L DYKVRILD +SATQA TRV+IEF +   D  W+TV V+TN+ISAS++AL+DGFEYAL+E  QSC +
Sbjct:  291 QGTINGIGERTGNADLCSIIPTLALHMGSNIACKKQLLNLTSVSRYVDEI------------LNRSPNVAAPYVGISAFAHKGGLHVAAMERSPLSYQHIDPALVGNEMRVLISELSGRQNILSKMEAAGVDISETGTN------DRALAILNRVKELEAVGYTFEGAEASVHLMILHATRGYCPPFRVLDYSAQVYDSNIDSATRVMKKHGISSSSLAPTARATIKVRTVSGSSDDDDCDTTNRPPFEDRLEVGDGNGPVDALAAALTRAVTPSHPYLKNIELVDYKVRILDPQSATQAATRVMIEFRDTQKDTKWTTVSVDTNVISASLNALVDGFEYALIEHSQSCPL 623          
BLAST of mRNA_Ecto-sp13_S_contig18462.5756.1 vs. uniprot
Match: A0A7S4QUS5_9STRA ((R)-citramalate synthase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QUS5_9STRA)

HSP 1 Score: 300 bits (767), Expect = 7.040e-93
Identity = 174/356 (48.88%), Postives = 235/356 (66.01%), Query Frame = 1
Query:    1 ADIPQGTVNGIGERTGNANLMTIIPTLQL--KMGMTGVGEHLTNLTALSRFTDEQARHIYLFPAIKRFNMAHTSGAPFTGMSAFAHKGGIHVSAVNKIPDSYQHIDPAQVGNKKRVLVSELSGQSNILSKVEDSGMASKTELKASKVWRERMGQVLKTVKRLETEGYSYEGADASVNLLVRRTMSGYVPPFKLLDYLVQIWDSDRTP-------GGLEFPSG--PTTARATVKVRVPSIDSEAELGIEGENPGV---RLEVAEGNGPVDALAKGLFRALLPTFPSLQSVKLSDYKVRILDQESATQAKTRVLIEFYEKSSDVGWSTVGVNTNIISASMSALMDGFEYALVEFGQSC 1026
            A + QGT+NGIGERTGNA+L +I+P+L L  K  +T     L N+T+LSRF DE              N +  S AP+ G SAFAHKGG+HV+A+ + P SYQH++PA VGN+KRVLVSELSG+ NIL K  D+G+    +        ER   +L  VK LE+ GY++EGADASV+L++  +  GY PPF++LDY  Q++D++          G LE  +G   +TARAT+KVR  ++D EA     G+ P     RLEV++GNGPVDAL+  L RAL P  P L +++L+DYKVRILD E AT A TRV+I+F + ++   W+TV V+ N+ISAS++AL+DGFEYALV+   SC
Sbjct:  319 AGMIQGTINGIGERTGNADLCSIVPSLSLHVKSNLT-CNPSLANITSLSRFIDET------------LNRSPDSAAPYVGASAFAHKGGLHVAAMERSPMSYQHVEPALVGNEKRVLVSELSGRQNILGKFRDAGLVDHPD---DDPVEERASAILNRVKHLESIGYTFEGADASVHLMILHSTRGYCPPFRILDYSAQVYDNNMDSASRVLEKGKLEHANGMGSSTARATIKVRTLNLDDEAYTS--GDAPLAFIDRLEVSDGNGPVDALSSALKRALSPPHPFLNTIELTDYKVRILDPEKATGATTRVMIDFEDTTTGESWTTVSVDRNVISASLNALVDGFEYALVQHSDSC 656          
BLAST of mRNA_Ecto-sp13_S_contig18462.5756.1 vs. uniprot
Match: A0A7S1VQR5_9STRA (Hypothetical protein n=2 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VQR5_9STRA)

HSP 1 Score: 291 bits (745), Expect = 2.330e-92
Identity = 171/361 (47.37%), Postives = 233/361 (64.54%), Query Frame = 1
Query:    1 ADIPQGTVNGIGERTGNANLMTIIPTLQLKMGMT-GVGEHLTNLTALSRFTDEQARHIYLFPAIKRFNMAHTSGAPFTGMSAFAHKGGIHVSAVNKIPDSYQHIDPAQVGNKKRVLVSELSGQSNILSKVEDSGMASKTELKASKVWRERMGQVLKTVKRLETEGYSYEGADASVNLLVRRTMSGYVPPFKLLDYLVQIWDSDRTPGGLEFPS-------------GPTTARATVKVRVPSIDSEAELGIEGENPGV---RLEVAEGNGPVDALAKGLFRALLPTFPSLQSVKLSDYKVRILDQESATQAKTRVLIEFYEKSSDVGWSTVGVNTNIISASMSALMDGFEYALVEFGQSCSI 1032
            A + QGT+NGIGERTGNA+L +IIPTL LK     GVG  L  LT++S+F DE    I                AP+ G SAF HKGG+HV+A+ +  DSYQHI+P  VGN++R +VSEL+G+  IL K+ D+G+ ++++         R   +L  VKRLE++GY++EGA+ASV+L++     GY PPFK+LDY VQ++DS+                       GPT ARATVKVR  ++D +A   ++   P +    LEV++GNGPVDALA+ L R+L+P+ P+L  ++L DYKVRILD ESAT A TRV+IEF  +  D  W+T  V+ NIISAS++AL+DGFEYAL+E  QSC +
Sbjct:   87 AGLIQGTINGIGERTGNADLCSIIPTLALKEESNMGVGGQLHELTSVSKFVDELLGRI------------PNPAAPYVGSSAFCHKGGLHVAAMERNADSYQHIEPTLVGNERRTVVSELAGRQTILGKMRDAGVETESD---------RAMAILNRVKRLESKGYTFEGAEASVHLMILHASRGYCPPFKVLDYSVQVYDSNMDSASRVMQKQMQSTNEDNDGDVGPT-ARATVKVRTLNLDEDAYSSMD--EPLLFKDHLEVSDGNGPVDALAQALMRSLVPSHPTLSGMQLVDYKVRILDPESATGASTRVMIEF--RDGDATWTTTSVDRNIISASVNALVDGFEYALIEHAQSCML 421          
BLAST of mRNA_Ecto-sp13_S_contig18462.5756.1 vs. uniprot
Match: B8C732_THAPS ((R)-citramalate synthase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C732_THAPS)

HSP 1 Score: 291 bits (746), Expect = 9.260e-91
Identity = 176/354 (49.72%), Postives = 234/354 (66.10%), Query Frame = 1
Query:   13 QGTVNGIGERTGNANLMTIIPTLQLKMG--MTGVGEHLTNLTALSRFTDEQARHIYLFPAIKRFNMAHTSGAPFTGMSAFAHKGGIHVSAVNKIPDSYQHIDPAQVGNKKRVLVSELSGQSNILSKVEDSGMASKTELKASKVWRERMGQVLKTVKRLETEGYSYEGADASVNLLVRRTMSGYVPPFKLLDYLVQIWDSD---------RTPGGLEFPSG-PTT-ARATVKVRVPSIDSEAELGIEGENPGVRLEVAEGNGPVDALAKGLFRALLPTFPSLQSVKLSDYKVRILDQESATQAKTRVLIEFYEKSSDVGWSTVGVNTNIISASMSALMDGFEYALVEFGQSCSID 1035
            QGTVNGIGERTGNA+L +I+P+L L +   MT   ++L  +T+LSRF DE              N     GAP+ G SAFAHKGG+HV+A+ + PDSYQHI+P +VGN+ RVL+SELSG+ NI+ K++   +    ++ A     ER   +L  VK+LE+ GY++EGADASV L++  +  GY PPF++LDY  Q++D++         +   G     G PT  ARATVKVRV    + +E          RLEV+EGNGPVDALA  L +AL P+ PSL++++L DYKVRILD ESATQA TRV+IEF + +++  WSTV V+ NIISAS++AL+DGFEYAL E   SC ID
Sbjct:  234 QGTVNGIGERTGNADLCSIVPSLALHVDSKMT-CNDNLEEITSLSRFLDET------------LNRTPNKGAPYVGHSAFAHKGGLHVAALERSPDSYQHIEPGKVGNQLRVLISELSGRQNIVGKIKKLDLDIGDDVVA-----ERSLVILDRVKKLESMGYTFEGADASVELMILHSTQGYCPPFRVLDYTAQVYDTNVDSASRVMSKMENGKHNNDGIPTNLARATVKVRVLDDPNHSEDEFLD-----RLEVSEGNGPVDALANALKKALTPSHPSLENLQLIDYKVRILDPESATQAATRVMIEFTDVTTNQKWSTVSVDRNIISASLNALVDGFEYALKEVVASCVID 564          
BLAST of mRNA_Ecto-sp13_S_contig18462.5756.1 vs. uniprot
Match: A0A2V3IHB1_9FLOR ((R)-citramalate synthase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IHB1_9FLOR)

HSP 1 Score: 288 bits (737), Expect = 2.770e-89
Identity = 172/352 (48.86%), Postives = 226/352 (64.20%), Query Frame = 1
Query:    1 ADIPQGTVNGIGERTGNANLMTIIPTLQLKMGMTGVGEHLTNLTALSRFTDEQARHIYLFPAIKRFNMAHTSGAPFTGMSAFAHKGGIHVSAVNKIPDSYQHIDPAQVGNKKRVLVSELSGQSNILSKVEDSGMASKTELKASKVWRERMGQVLKTVKRLETEGYSYEGADASVNLLVRRTMSGYVPPFKLLDYLVQIWDSDRTPGGLEF---PSGPTTARATVKVRVPSIDSEAELGIE--GENPGVRL--EVAEGNGPVDALAKGLFRALLPTFPSLQSVKLSDYKVRILDQESATQAKTRVLIEFYEKSSDVGWSTVGVNTNIISASMSALMDGFEYALVEFGQSCSID 1035
            A + QGT+NG GERTGNANLM+I+PTLQLKMG   VG+ L  LT LSR+TDE              N  H    P+ G S+FAHKGG+HV+AV K  ++YQHIDP  VGN++R+LVSELSG+ NIL+K E+ G+    E K    W  R+  VL+ VK LE +GYS+EGA+AS+ L++RRT+ GY PPF+LLD+ V   D+ R   G      P+  +  +A+VK+        A LG E  G+    ++  E+AEGNGPVDA+   L + LLP +  L+SV L DYKVRILD  S T A TRV++EF E S+   W+TV  + NII AS++ALMDGFE A+ +    C I+
Sbjct:  251 ATLVQGTINGFGERTGNANLMSIVPTLQLKMGHDCVGDRLQQLTDLSRYTDEIT------------NQPHVPNRPYVGASSFAHKGGLHVAAVLKDENTYQHIDPVLVGNERRILVSELSGRRNILTKAEELGLHPADESKDGVEWNVRVKAVLEQVKELENKGYSFEGAEASLELMLRRTVHGYRPPFELLDFSVST-DNKRVVYGNVLNATPNNESVTQASVKL--------ALLGPEDGGDQCPTKICFEIAEGNGPVDAVNGALQKCLLPVYAPLRSVSLVDYKVRILDNASGTAAITRVMVEFEESSNGKRWTTVYAHPNIIVASVNALMDGFEVAMWDQLPQCIIN 581          
BLAST of mRNA_Ecto-sp13_S_contig18462.5756.1 vs. uniprot
Match: R7QGZ5_CHOCR ((R)-citramalate synthase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QGZ5_CHOCR)

HSP 1 Score: 287 bits (735), Expect = 3.120e-89
Identity = 171/348 (49.14%), Postives = 228/348 (65.52%), Query Frame = 1
Query:    1 ADIPQGTVNGIGERTGNANLMTIIPTLQLKMGMTGVGEHLTNLTALSRFTDEQARHIYLFPAIKRFNMAHTSGAPFTGMSAFAHKGGIHVSAVNKIPDSYQHIDPAQVGNKKRVLVSELSGQSNILSKVEDSGMA-SKTELKASKVWRERMGQVLKTVKRLETEGYSYEGADASVNLLVRRTMSGYVPPFKLLDYLVQIWDSDRT---PGGLEFPSGPTTARATVKVRVPSIDSEAELGIEGENPGVRLEVAEGNGPVDALAKGLFRALLPTFPSLQSVKLSDYKVRILDQESATQAKTRVLIEFYEKSSDVGWSTVGVNTNIISASMSALMDGFEYALVEFGQSCSI 1032
            A + QGTVNG GERTGNANLM+I+PTLQLK+G   VG+ L+ LT+LSRF DE A                 SG PF G+S+FAHKGG+HV+AV K  D+YQHIDP+ VGN+KR+LVSEL+G+ N+LSK E+ G+  +  +  A + W  R  QVL  VK LE +GYS+EGA+AS+ L++RR++ GY PPF+LLD+ V   D+ R    P     P   +  +ATVK+ +       + G E     + LEVAEGNGP+DA+   L + L   +  LQ+V L+DYKVRILD ESAT A TRV+++F + +S   W+TV  + NII AS++ALMDGFE A+ +    C I
Sbjct:  229 ASLVQGTVNGYGERTGNANLMSIVPTLQLKLGYACVGDALSKLTSLSRFVDEIACQ------------KPVSGQPFVGVSSFAHKGGLHVAAVLKNEDTYQHIDPSLVGNEKRILVSELAGRRNVLSKAEELGLVPAGDDAGARQEWGNRAKQVLGQVKDLENKGYSFEGAEASLELMLRRSVEGYRPPFELLDFSVTT-DNKRIHYGPNSEGPPFNESVTQATVKIALLG----PKDGGEACPTKICLEVAEGNGPIDAVNGALGKVLFSMYQPLQTVALTDYKVRILDSESATAATTRVVVDFEDSASGRQWTTVYAHPNIIVASVNALMDGFEVAMWDSLPQCCI 559          
BLAST of mRNA_Ecto-sp13_S_contig18462.5756.1 vs. uniprot
Match: A0A7S0C9D0_9STRA ((R)-citramalate synthase n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C9D0_9STRA)

HSP 1 Score: 284 bits (727), Expect = 3.480e-89
Identity = 170/367 (46.32%), Postives = 228/367 (62.13%), Query Frame = 1
Query:    1 ADIPQGTVNGIGERTGNANLMTIIPTLQLKMGMTGVG--EHLTNLTALSRFTDEQARHIYLFPAIKRFNMAHTSGAPFTGMSAFAHKGGIHVSAVNKIPDSYQHIDPAQVGNKKRVLVSELSGQSNILSKVEDSGMASKTELKASKVWRERMGQVLKTVKRLETEGYSYEGADASVNLLVRRTMSGYVPPFKLLDYLVQIWDSDRTPGG--------------------LEFPSGPTTARATVKVRVPSIDSEAELGIEGENPGVRLEVAEGNGPVDALAKGLFRALLPTFPSL-QSVKLSDYKVRILDQESATQAKTRVLIEFYEKSSDVGWSTVGVNTNIISASMSALMDGFEYALVEFGQSCSI 1032
            A + QGT+NGIGERTGNA+L TIIP+L L  G + +   + L+ LT LSRF DE              N +  + APF G SAFAHKGG+HV+A+ + PDSYQHIDP  VGN+KRVL+SELSG+ NIL K+ ++G+      + S+V  ER   +L+ VK LE+ GY++EGA+ASV+L++     GY PPF +LDY  Q++DS+                         +       TARAT+K+R P++D  A+ G E      RLE A+G GP+DAL   L  AL  + P L QSV + DYKVRILD ++AT+A  RV+IEF    +D  W+TV V+ NIISAS++AL+DGFEYAL+E    C +
Sbjct:  105 AGMVQGTMNGIGERTGNADLCTIIPSLALH-GSSNLTCRDSLSGLTTLSRFVDET------------MNRSPVTSAPFVGASAFAHKGGLHVAAMERSPDSYQHIDPTAVGNEKRVLISELSGRQNILDKIREAGVLFGDTHEQSEVMSERANAILERVKLLESIGYTFEGANASVHLMILHATRGYCPPFSVLDYSAQVFDSNMDSASRVMRKQXXXXXXXXXXXXXXVVIQRASPTARATIKIRTPNVD--AKHGDELYTD--RLEAADGKGPIDALGTALTNALKSSHPLLSQSVIIVDYKVRILDPKTATEAAARVMIEFKNVETDTSWTTVSVDRNIISASLNALVDGFEYALIEDHSECML 454          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18462.5756.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTV2_ECTSI3.040e-22695.14(R)-citramalate synthase n=1 Tax=Ectocarpus silicu... [more]
A0A836CCG4_9STRA1.520e-10453.57(R)-citramalate synthase n=1 Tax=Tribonema minus T... [more]
A0A7S2UWY3_9STRA1.810e-9550.42(R)-citramalate synthase n=1 Tax=Fibrocapsa japoni... [more]
A0A1Z5JTT2_FISSO2.720e-9450.14(R)-citramalate synthase n=1 Tax=Fistulifera solar... [more]
A0A7S4QUS5_9STRA7.040e-9348.88(R)-citramalate synthase n=1 Tax=Ditylum brightwel... [more]
A0A7S1VQR5_9STRA2.330e-9247.37Hypothetical protein n=2 Tax=Grammatophora oceanic... [more]
B8C732_THAPS9.260e-9149.72(R)-citramalate synthase n=1 Tax=Thalassiosira pse... [more]
A0A2V3IHB1_9FLOR2.770e-8948.86(R)-citramalate synthase n=1 Tax=Gracilariopsis ch... [more]
R7QGZ5_CHOCR3.120e-8949.14(R)-citramalate synthase n=1 Tax=Chondrus crispus ... [more]
A0A7S0C9D0_9STRA3.480e-8946.32(R)-citramalate synthase n=1 Tax=Proboscia inermis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18462contigEcto-sp13_S_contig18462:9..3398 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score646.7
Seed ortholog evalue6.1e-183
Seed eggNOG ortholog2880.D8LTV2
Model size1053
KEGG rclassRC00004,RC00470,RC02754
KEGG koko:K01649
KEGG ReactionR01213
KEGG Pathwayko00290,ko00620,ko01100,ko01110,ko01210,ko01230,map00290,map00620,map01100,map01110,map01210,map01230
KEGG ModuleM00432
Hectar predicted targeting categoryother localisation
Exons9
EggNOG free text desc.Belongs to the alpha-IPM synthase homocitrate synthase family
EggNOG OGsCOG0119@1,KOG2367@2759
Ec32 ortholog description2-Isopropylmalate synthase
Ec32 orthologEc-28_002630.1
EC2.3.3.13
Cds size1053
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01601,ko00000,ko00001,ko00002,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18462.5756.1prot_Ecto-sp13_S_contig18462.5756.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18462 9..3398 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462948.7588496-CDS-Ecto-sp13_S_contig18462:8..1491681462948.7588496-CDS-Ecto-sp13_S_contig18462:8..149Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18462 9..149 -
1681462948.7776458-CDS-Ecto-sp13_S_contig18462:480..5491681462948.7776458-CDS-Ecto-sp13_S_contig18462:480..549Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18462 481..549 -
1681462948.7889435-CDS-Ecto-sp13_S_contig18462:757..8621681462948.7889435-CDS-Ecto-sp13_S_contig18462:757..862Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18462 758..862 -
1681462948.79977-CDS-Ecto-sp13_S_contig18462:1246..13181681462948.79977-CDS-Ecto-sp13_S_contig18462:1246..1318Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18462 1247..1318 -
1681462948.8101938-CDS-Ecto-sp13_S_contig18462:1678..17751681462948.8101938-CDS-Ecto-sp13_S_contig18462:1678..1775Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18462 1679..1775 -
1681462948.8245149-CDS-Ecto-sp13_S_contig18462:2071..21841681462948.8245149-CDS-Ecto-sp13_S_contig18462:2071..2184Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18462 2072..2184 -
1681462948.8332932-CDS-Ecto-sp13_S_contig18462:2425..25431681462948.8332932-CDS-Ecto-sp13_S_contig18462:2425..2543Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18462 2426..2543 -
1681462948.8421547-CDS-Ecto-sp13_S_contig18462:2708..28511681462948.8421547-CDS-Ecto-sp13_S_contig18462:2708..2851Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18462 2709..2851 -
1681462948.8513772-CDS-Ecto-sp13_S_contig18462:3203..33981681462948.8513772-CDS-Ecto-sp13_S_contig18462:3203..3398Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18462 3204..3398 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18462.5756.1

>prot_Ecto-sp13_S_contig18462.5756.1 ID=prot_Ecto-sp13_S_contig18462.5756.1|Name=mRNA_Ecto-sp13_S_contig18462.5756.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=351bp
ADIPQGTVNGIGERTGNANLMTIIPTLQLKMGMTGVGEHLTNLTALSRFT
DEQARHIYLFPAIKRFNMAHTSGAPFTGMSAFAHKGGIHVSAVNKIPDSY
QHIDPAQVGNKKRVLVSELSGQSNILSKVEDSGMASKTELKASKVWRERM
GQVLKTVKRLETEGYSYEGADASVNLLVRRTMSGYVPPFKLLDYLVQIWD
SDRTPGGLEFPSGPTTARATVKVRVPSIDSEAELGIEGENPGVRLEVAEG
NGPVDALAKGLFRALLPTFPSLQSVKLSDYKVRILDQESATQAKTRVLIE
FYEKSSDVGWSTVGVNTNIISASMSALMDGFEYALVEFGQSCSIDAGTRS
*
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mRNA from alignment at Ecto-sp13_S_contig18462:9..3398-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18462.5756.1 ID=mRNA_Ecto-sp13_S_contig18462.5756.1|Name=mRNA_Ecto-sp13_S_contig18462.5756.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3390bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18462:9..3398- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCGACATTCCGCAGGGCACCGTGAACGGGATAGGAGAGCGGACGGGGAA CGCGAACTTGATGACCATCATCCCTACCCTTCAGCTGAAGATGGGGATGA CGGGTGTCGGTGAACACTTGACCAACCTCACCGCCCTGAGCAGATTCACC GACGAACAGGCGAGACACATCTATCTCTTTCCCGCGATAAAACGCGTTGT TTTTTTTCCTTGGTTCGTCAACGCTCGATCGGTAATACCCACAATGTTCT TGCCACAGGTCAAGAGTGCCGTGTGCCCCTGGCTGGTACTATGGGTGGCA ACTCAATCCATCGTGTTTCATTAGAGCGCAAACGTTCATATACCGAGATG ACGTCGCCTGATCATGATTTCTTATGTTCCTTGAAATGCATCCACGCCGG TTCTCCGCCCATTTTGGGTGTCGACCGTACTCTTTAGCTTGTCGACCGCG TTTTGCACACCACACGCGTCCGAAATGCAACCGCTGCGACAAATTCTGAC AAGCGCCGCGTTTTTTTCCACTCGCTGCCGTTCTCGGCCAACTCCAGTTT AACATGGCCCACACATCCGGGGCTCCTTTTACCGGCATGAGTGCGTTTGC CCACAAGGGCGGGATACACGTCAGCGCCGTAAACAAGATCCCTGACTCGT ACCAGCACATCGACCCCGCCCAAGTCGGAAACAAGAAAAGGTGAACACTC TGGTGCGCTGCCACGCGAGTCCGTCTTCCAAGGCATTGTTTCGCCTCTGT ACGCAGGGCTTTGCGAAAGTGGACGATCTTGCGGAGATTTCTTCGGCACT GCTGTCACACCCCTTCACCCAAACTATCCCGAACGACGCTTTCCGCTACA CCCAGGGTGCTTGTCTCGGAGTTGTCAGGGCAGAGCAACATCCTGTCGAA AGTTGAGGATTCGGGAATGGCTAGCAAGACCGAACTTAAGGCCTCGAAAG TCTGGAGGGAACGCATGGGACAGGTTTGACTCACTTTTTTTCTTTTTTTT TTGTCCGAAGGAGGCGAACTCTAAGATTTGAAGCCTTTGAGACAAGGGAA CACCGCAGCAGCGGACGTGCCACTTGGACCACATCTCGCACACCGAAGCG GACGTGCCACGCTCATGTTGGACGTATGCTGACCGCGGATGCATATAGCT TGGTTCGGGCGACACCACCGCTGGGCACGCGTCCCGACTCCCGGCCTCCC TTTCGGTTGCACAGGTGCTGAAAACGGTCAAGCGCTTGGAGACGGAGGGG TACAGCTACGAGGGCGCGGACGCCTCCGTGAACCTTCTCGTCCGAAGAAC GATGAGCGGCTACGTTCCTCCATTCAAGTGAGAGNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNTTTCCATGGCTCCAGTGCGCACGCAGATACCACACGTTCCA TGATTTCGCTCCCCAGTGAAACCCTAAGGCAATAACCACACCTCTTGACC CGTGGTCGGTGCCGGCTGAGCAGGTTGCTGGACTATCTCGTCCAAATCTG GGACAGCGACCGTACACCCGGGGGGCTAGAGTTTCCTTCCGGCCCTACAA CCGCGAGAGCCACCGTAAAGGTCGGTCACGTGGCACATGTCGCAGCTGCT TCCGTTGGACGCTGGCCGCACCAAACCCCGGTAGCGTATCTAGGGTCGGC GGTGTCTTCTATCGAGCAGATCGTACCGCCGGGCAACCTCCTCAGCCTCT GAAGCTGTTCACACTACAGCACATCCGCTGGCCCACGGGCGTCACTTTCC CGTTGTCCGATATTTTGCCACACAGTGCATCTCGGGTCGTTAGTTTTGTC TACCGAGCAGATCTAACCGCCGGGTAACCTCCTCAGCCTCTTATGCTTTT CACACTGCAGCACGTCCGCCGTCCTACGGGCGCCACTTTCCCGTTGTCCG ATATTTTGCCACACGATGTTATGATGCCAGGTTCGGGTTCCTTCGATCGA TTCAGAGGCTGAGTTGGGCATCGAGGGGGAAAACCCAGGAGTCCGCCTCG AGGTAGGGAGACGTCGCTGAGACAATCTGATTGGGCGAAATTGCGGGGAT TTTTAGTCTTTGTCTCATGCCGAACCCATGGTGTGATACTGCTGTATGGG GTCTCGGTGTATGTATGAGTTTTTATGGTATCGTCTTTTGCCGGACCCAT GGTGTGGTACTCTGCTGTATCTGGAATGTCTCCTTCTAGTTCCCCCTCTT TCGCCGCAGAACGTCTTATTTTCATATGGCCCCGACACTTGTTTTGCGAG TGCATAACGCAGGGAGCCTCGCGATGTTGCCTTTCCGCTGAAGGACGCGA TCACCCCCGCGGTACAACATCTTATTTTGTTCTCTTCACAACAAACTGAC CGATGCGATGATCTGCTGACGTTGTGTACGCATCAGGTGGCGGAAGGAAA CGGACCTGTAGATGCTTTGGCGAAAGGTCTGTTTCGTGCTCTTCTGCCGA CATTTCCTTCTCTTCAAAGCGTCAAGCTCAGCGACTACAAGGTGTGGGAC GAGTCCGTTGAACAGATGGTCAACTGCTGACTTCGGTGCTTTCGCGAGCG CTGTGTCGGCTTTTGTGTTGTGACGCTGATGGGCTGTCCTGGTGTAGAAA AACCAGAATGCTTTTGGTATCTTCAGGATTTGCCATGCCACACGTTACTG AGGTATCGCTGGCTGTCTCGACATCTTTTTCGTATCCCCAAAATTGCAGG TGCGCATCTTGGATCAAGAGAGTGCCACGCAGGCCAAAACTCGGGTGTTG ATCGAGTTCTACGAGAAGGTACGACGGCTGCCACTGCTGTCAACGGTTCC ATACTTGAGGTGTACTTGCGGCACGATTGATCCTGTTTCATATACACCCG TTACTACCATTGAGGCATCGCATTTCTTGGCCCTTTCCCTGTCGGGTACC ATACAGCGGTGCTGTGCACTTCCCCCGTTTTGCCTTCCCCATGGGTTTTG TGGAGCATCGTTAGTCATCGAGTGCCGGTCAAGCCCATTTCCACTACCTC TCCTTCCCGTCGTGCTTCACGGTAGGGAGAACACGCGATGCATGTTCTTT GGTTCATTCGTGCCCCCTGCTGCTGCTTTTTCCCTTCTCTGTCTCTCAGT CATCGGATGTTGGATGGTCGACGGTTGGCGTAAACACGAACATCATTTCC GCGTCAATGTCTGCTCTTATGGATGGCTTCGAGTACGCTCTGGTTGAGTT TGGCCAAAGCTGCTCAATCGATGCCGGAACGCGAAGTTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18462:9..3398-

>mRNA_Ecto-sp13_S_contig18462.5756.1 ID=mRNA_Ecto-sp13_S_contig18462.5756.1|Name=mRNA_Ecto-sp13_S_contig18462.5756.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1053bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18462:9..3398- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCGACATTCCGCAGGGCACCGTGAACGGGATAGGAGAGCGGACGGGGAA
CGCGAACTTGATGACCATCATCCCTACCCTTCAGCTGAAGATGGGGATGA
CGGGTGTCGGTGAACACTTGACCAACCTCACCGCCCTGAGCAGATTCACC
GACGAACAGGCGAGACACATCTATCTCTTTCCCGCGATAAAACGCTTTAA
CATGGCCCACACATCCGGGGCTCCTTTTACCGGCATGAGTGCGTTTGCCC
ACAAGGGCGGGATACACGTCAGCGCCGTAAACAAGATCCCTGACTCGTAC
CAGCACATCGACCCCGCCCAAGTCGGAAACAAGAAAAGGGTGCTTGTCTC
GGAGTTGTCAGGGCAGAGCAACATCCTGTCGAAAGTTGAGGATTCGGGAA
TGGCTAGCAAGACCGAACTTAAGGCCTCGAAAGTCTGGAGGGAACGCATG
GGACAGGTGCTGAAAACGGTCAAGCGCTTGGAGACGGAGGGGTACAGCTA
CGAGGGCGCGGACGCCTCCGTGAACCTTCTCGTCCGAAGAACGATGAGCG
GCTACGTTCCTCCATTCAAGTTGCTGGACTATCTCGTCCAAATCTGGGAC
AGCGACCGTACACCCGGGGGGCTAGAGTTTCCTTCCGGCCCTACAACCGC
GAGAGCCACCGTAAAGGTTCGGGTTCCTTCGATCGATTCAGAGGCTGAGT
TGGGCATCGAGGGGGAAAACCCAGGAGTCCGCCTCGAGGTGGCGGAAGGA
AACGGACCTGTAGATGCTTTGGCGAAAGGTCTGTTTCGTGCTCTTCTGCC
GACATTTCCTTCTCTTCAAAGCGTCAAGCTCAGCGACTACAAGGTGCGCA
TCTTGGATCAAGAGAGTGCCACGCAGGCCAAAACTCGGGTGTTGATCGAG
TTCTACGAGAAGTCATCGGATGTTGGATGGTCGACGGTTGGCGTAAACAC
GAACATCATTTCCGCGTCAATGTCTGCTCTTATGGATGGCTTCGAGTACG
CTCTGGTTGAGTTTGGCCAAAGCTGCTCAATCGATGCCGGAACGCGAAGT
TAA
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