mRNA_Ecto-sp13_S_contig1843.5741.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1843.5741.1 vs. uniprot
Match: A0A6H5KVH9_9PHAE (t-SNARE coiled-coil homology domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KVH9_9PHAE) HSP 1 Score: 442 bits (1138), Expect = 2.610e-156 Identity = 236/241 (97.93%), Postives = 240/241 (99.59%), Query Frame = 1
Query: 31 MASGDVKYWDTSYGKTLDQLDGFISTMESGSGDAREDAISEASRSLKRLAGMRRSYNLEIKLLKDPNTKAHYNLEKSQKDSRYATLQSRFDAAKASGESTRDELFGGRRDVESGEAQGKSAEAKLTEADQYQDKTEAAYKNMIGVLQETEATADNTAVELTNQREQLARITEDVTEIDSLLTRADRLVKVFSKRMMTDKFIQCFGCLNVSAMVAIIVYVVVQQVELPGGDDNDVPDPAAGS 753
MASGDVKYWDTSYGKTLDQLDGFI+TMESGSGDAREDA+SEASRSLKRLAGMRRSYNLEIKL+KDPN KAHYNLEKSQKDSRYATLQSRFDAAKASG+STRDELFGGRRDVESGEAQGKSAEAKLTEADQYQDKTEAAYKNMIGVLQETEATADNTAVELTNQREQLARITEDVTEIDSLLTRADRLVKVFSKRMMTDKFIQCFGCLNVSAMVAIIVYVVVQQVELPGGDDNDVPDPAAGS
Sbjct: 1 MASGDVKYWDTSYGKTLDQLDGFIATMESGSGDAREDAMSEASRSLKRLAGMRRSYNLEIKLIKDPNMKAHYNLEKSQKDSRYATLQSRFDAAKASGDSTRDELFGGRRDVESGEAQGKSAEAKLTEADQYQDKTEAAYKNMIGVLQETEATADNTAVELTNQREQLARITEDVTEIDSLLTRADRLVKVFSKRMMTDKFIQCFGCLNVSAMVAIIVYVVVQQVELPGGDDNDVPDPAAGS 241
BLAST of mRNA_Ecto-sp13_S_contig1843.5741.1 vs. uniprot
Match: A0A835Z1V1_9STRA (Soluble NSF attachment protein receptor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1V1_9STRA) HSP 1 Score: 190 bits (483), Expect = 7.400e-57 Identity = 110/226 (48.67%), Postives = 157/226 (69.47%), Query Frame = 1
Query: 40 GDVKYWDTSYGKTLDQLDGFISTMESGSGDAREDAISEASRSLKRLAGMRRSYNLEIKLLKDPNTKAHYNLEKSQKDSRYATLQSRFDAAKAS-GESTRDELFGGRRDVESGEAQGKSAEAKLTEADQYQDKTEAAYKNMIGVLQETEATADNTAVELTNQREQLARITEDVTEIDSLLTRADRLVKVFSKRMMTDKFIQCFGCLNVSAMVAIIVYVVVQQVELPG 714
GDVKYWDTSYGK LD+L + ++ S +E I+ A+++++RL GM+RSYNLEIKL++D KA Y EK+ KD++ L+++ + AK S + LF GR + E + K+A+ KL +A+ Q+KTEA YKN+I VL++TE TA L QR Q++ ITE+V E+D +LTRA++L+ VFS+R+ TDK IQCF +NV+A+VAIIVYVV++ V LPG
Sbjct: 2 GDVKYWDTSYGKALDELSDQVKAVKGASAAEKEAKIATATQTVRRLQGMKRSYNLEIKLMRDATQKASYQEEKNAKDAKLTELEAQLEEAKNKPAGSDKVSLFSGRA---AEEPKVKTADQKLDQAEIIQNKTEAKYKNIITVLEQTEEVGSATAATLQEQRAQISEITENVMEMDGMLTRANKLIMVFSRRLATDKMIQCFAFINVAALVAIIVYVVIKNVGLPG 224
BLAST of mRNA_Ecto-sp13_S_contig1843.5741.1 vs. uniprot
Match: A0A835Z325_9STRA (Soluble NSF attachment protein receptor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z325_9STRA) HSP 1 Score: 155 bits (392), Expect = 3.360e-43 Identity = 104/239 (43.51%), Postives = 145/239 (60.67%), Query Frame = 1
Query: 40 GDVKYWDTSYGKTLDQLDGFISTM-ESGSGDAREDAISEASRSLKRLAGMRRSYNLEIKLLKDPNTKAHYNLEKSQKDSRYATLQSRFDAA--KASGESTRDELFGGRRDVESGEAQGKSAEAKLTEADQYQDKTEAAYKNMIGVLQETEATADNTAVELTNQREQLARITEDVTEIDSLLTRADRLVKVFSKRMMTDKFIQCFGCLNVSAMVAIIVYVVVQQVELPG-GDDNDVPDPA 744
GD+++WD +YG LD L+ + + E+ + R+ S A+ +++RL G++RSYNLEIKL +D KA Y K+ KD+R L+++ + A K E+ R LF GR +E A A+AKL +A QDKTEA YKNM+ VL +TE A L +QR Q+ I EDV + LTRA +L+ VF KR+ TDKFIQCFG +NV+ +V II+YVV+ + L G N P PA
Sbjct: 2 GDLQFWDGNYGNVLDGLESQLHQVREAYTPSDRDQLASTAASTVRRLQGIKRSYNLEIKLTRDTGLKAMYTDAKAAKDARLEQLEAQLEEARRKPGREAERAALFDGRA-IEMAPA----ADAKLDQASAIQDKTEARYKNMVTVLAQTEEIGTAAAASLADQRTQMVAIDEDVKVMHENLTRAGKLLHVFGKRLATDKFIQCFGFVNVALLVGIILYVVITKTGLSSSGASNPPPTPA 235
BLAST of mRNA_Ecto-sp13_S_contig1843.5741.1 vs. uniprot
Match: W7TW41_9STRA (Soluble nsf attachment protein receptor n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TW41_9STRA) HSP 1 Score: 113 bits (282), Expect = 2.250e-26 Identity = 76/236 (32.20%), Postives = 135/236 (57.20%), Query Frame = 1
Query: 43 DVKYWDTSYGKTLDQLDGFISTMESGSGDAREDAISEASRSLKRLAGMRRSYNLEIKLLKDPNTKAHYNLEKSQK-DSRYATLQSRFDAAKASGESTRDELFGGRRDVESGEAQGKSA--EAKLTEADQYQDKTEAAYKNMIGVLQETEATADNTAVELTNQREQLARITEDVTEIDSLLTRADRLVKVFSKRMMTDKFIQCFGCLNVSAMVAIIVYVVVQQVELPGGDDNDVPDP 741
D++YWD L +L+ I ++S G +E I+++ +LKR+ +++ YN E+++ + + H EK + D R A L++ AK E+ + LF G + + ++A + LTEA + QDKTEA+ ++ +G+++ ++ NT E+ Q+EQ+A IT+ V ++ LTRAD+L++ F +R+ TDKFIQ F LN +V IIV+ V++ ++ + + P P
Sbjct: 3 DIEYWDGELSSKLAELEQTIGNLKSMRGGDKEAGIAKSEATLKRVREVKKGYNYEMRMSLKNDPRRHEYAEKLKAVDERIAALETELKWAKT--EANKKSLFKGSKGADGSGTLNENATNDTYLTEAKKIQDKTEASLQSALGMVEASKQVGANTVDEVNRQKEQIAEITDTVEAMEDGLTRADKLIRAFGRRIATDKFIQFFFVLNFGLLVGIIVWYAVKKGKVRAPEIHAPPMP 236
BLAST of mRNA_Ecto-sp13_S_contig1843.5741.1 vs. uniprot
Match: A0A7S2V573_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V573_9STRA) HSP 1 Score: 109 bits (272), Expect = 2.250e-25 Identity = 77/235 (32.77%), Postives = 121/235 (51.49%), Query Frame = 1
Query: 46 VKYWDTSYGKTLDQLDGFISTMESGSGDAREDAISEASRSLKRLAGMRRSYNLEIKLLKDPNTKAHYNLEKSQKDSRYATLQSRFDAAKASGESTRDELFGGRRDVESGEAQGKSAE---AKLTEADQYQDKTEAAYKNMIGVLQETEATADNTAVELTNQREQLARITEDVTEIDSLLTRADRLVKVFSKRMMTDKFIQCFGCLNVSAMVAIIVYVVVQQVELPGGDDNDVPDP 741
++YWD +DQ + ++ + A E A E L+ G+++S+ E++LL D + HY ++ + + R + L R + ++ + E ++ L G + G G S + A L +A++ QD E AY L E A T EL NQRE++ ITE ID LLTRADRL++ F +RM TD+ IQ F +N ++A+I+Y +V L GG + PDP
Sbjct: 1 MEYWDERINSLIDQGEREAEKLDMDNETAME-ACQEIEHCLQSAKGVKQSFTTELRLLGDKVEEQHYKMKLRRYEERMSALTERLNGSREAIE--KEHLMRGAQQRRGGGGFGDSDDPNDAMLGKAEKLQDDIEDAYGRAENDLDEIRQLAPETLAELRNQREKIQDITETAERIDDLLTRADRLLRTFGRRMATDRLIQVFFFINACLLLAVIIYAIVSDSNLTGGSGSKAPDP 232
BLAST of mRNA_Ecto-sp13_S_contig1843.5741.1 vs. uniprot
Match: B8BZJ7_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BZJ7_THAPS) HSP 1 Score: 104 bits (260), Expect = 1.150e-23 Identity = 67/213 (31.46%), Postives = 113/213 (53.05%), Query Frame = 1
Query: 133 REDAISEASRSLKRLAGMRRSYNLEIKLLKDPNTKAHYNLEKSQKDSRYATLQSRFDAAKASGESTRDELFGGRRDVES------GEAQGKSA-EAKLTEADQYQDKTEAAYKNMIGVLQETEATADNTAVELTNQREQLARITEDVTEIDSLLTRADRLVKVFSKRMMTDKFIQCFGCLNVSAMVAIIVYVVVQQVELPGGDDNDVPDPAAG 750
+ + A + L+ G ++SY +E +L+ DPN K Y + S+ ++ + A K G R ELF G R S GE G+ A ++ L++ + QDKT+ + N ++ ++ + T EL QREQ+ + + I+ L RAD+L+K F KRM TD+FIQCF C+N+ +V +++Y ++++ L GG++ P G
Sbjct: 3 KASTLDRAEKKLRAANGTKKSYKMETRLVADPNQKRMYENKLSRLSEELSSCANDLKAMK--GGMQRGELFVGARGKSSRGGGEYGEMSGEEAGDSMLSDMNNIQDKTKNSLANTKHMVAASKEVGEATMEELLRQREQIRNVDNEAMRIEDNLQRADKLIKTFGKRMATDRFIQCFACINILLLVGVVIYTILKKGSLTGGENEGAPASPVG 213
BLAST of mRNA_Ecto-sp13_S_contig1843.5741.1 vs. uniprot
Match: A0A7S4A3K9_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A3K9_9STRA) HSP 1 Score: 105 bits (262), Expect = 2.650e-23 Identity = 76/230 (33.04%), Postives = 121/230 (52.61%), Query Frame = 1
Query: 37 SGDVKYWDTSYGKTLDQLDGFISTMESGSGDAREDAISEASRSLKRLAGMRRSYNLEIKLLKDPNTKAHYNLEKSQKDSRYATLQSRFDAAKASGESTRDELFGGRRDVESGEAQGKSAEAKLTEADQYQDKTEAAYKNMIGVLQETEATADNTAVELTNQREQLARITEDVTEIDSLLTRADRLVKVFSKRMMTDKFIQCFGCLNVSAMVAIIVYVVVQQVELPGGDDN 726
S D+ YW SY ++D D ++++ + D R I A LKR G+++SY LE++LL+D K +Y + D R L+ R + + E R L ++ + + K + L +A QDKTE + +++ ++ +T EL Q++Q+ ++ D+ I+ L+RADRL++ F+KRMMTDK I F LN+ A+ IIVY VV L GDD
Sbjct: 60 STDIDYWSDSYRSSIDDADRLVTSLGACEPDERLSIIDAADAKLKRAGGIKKSYKLELRLLRDRELKRNYEESLRELDDRRDELKRRVEEHRERTE--RSTLL---QETPAAFGEHKGNDYYLDKAHSLQDKTENTLERTTQMIEASKEVGASTLSELERQQDQIKDVSADIMLIEDNLSRADRLIRNFTKRMMTDKLIMGFAFLNMCALTGIIVYCVVTGKVL--GDDK 282
BLAST of mRNA_Ecto-sp13_S_contig1843.5741.1 vs. uniprot
Match: A0A7S2P5B9_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P5B9_9STRA) HSP 1 Score: 101 bits (252), Expect = 3.450e-22 Identity = 64/230 (27.83%), Postives = 117/230 (50.87%), Query Frame = 1
Query: 43 DVKYWDTSYGKTLDQLDGFISTMESGSGDAREDAISEASRSLKRLAGMRRSYNLEIKLLKDPNTKAHYNLEKSQKDSRYATLQSRFDAAKASGESTRDELFGGRRDVESGEAQGKSAEAKLTEADQYQDKTEAAYKNMIGVLQETEATADNTAVELTNQREQLARITEDVTEIDSLLTRADRLVKVFSKRMMTDKFIQCFGCLNVSAMVAIIVYVVVQQVELPGGDDNDV 732
D++YW+ + + ++ L + + + +G ++ EA + L+ G +RSY LE++++K+ + Y + +++ L K+S +T+D L G ++G + +A + EA QDKT+ + ++ E++ NT L QR Q+ RI L RAD L+K FSKRM DKFIQC C+N+S + +I++++ + GDD+ +
Sbjct: 3 DIEYWEETLKEEIEDLSTVLGLVVAQTGSKQKQKFDEADKKLRDANGTKRSYKLEMRVIKNATQRKMYEKQLKDHETKLKALADHLKNLKSS--ATKDTLLEG---ADTGRTPEQEGDAMMNEARNTQDKTQTSLDRTKQLVAESKDIGQNTLATLEEQRAQIERIDAHADRTMENLGRADLLIKNFSKRMANDKFIQCCACINISLFIGVILFLIFKNRSDDDGDDSSI 227
BLAST of mRNA_Ecto-sp13_S_contig1843.5741.1 vs. uniprot
Match: A0A7S1FMQ8_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FMQ8_9STRA) HSP 1 Score: 98.6 bits (244), Expect = 3.400e-21 Identity = 69/224 (30.80%), Postives = 115/224 (51.34%), Query Frame = 1
Query: 40 GDVKYWDTSYGKTLDQLDGFISTME---SGSGDAREDAISEASRSLKRLAGMRRSYNLEIKLLKD-PNTKAHYNLEKSQKDSRYATLQSRFDAAKASGESTRDELFGGRRDVESGEAQGKSAEAKLTEADQYQDKTEAAYKNMIGVLQETEATADNTAVELTNQREQLARITEDVTEIDSLLTRADRLVKVFSKRMMTDKFIQCFGCLNVSAMVAIIVYVVVQQ 699
GD++YW S+ L L I ++ A + AI A LK+ + +++SY LE++L+ P K Y + + ++ + D AKA + R EL G + G + + L EA + QDKT+ + ++ E++ T EL QR Q+ R+T+DV I+ L RA++L+K F +RM TDKFIQCF C+N+ ++ ++ ++ Q
Sbjct: 2 GDIEYWRDSFQSELSTLPEIIRDIDRVRKKGPYAIQSAIRNAEDQLKKCSNIQKSYKLELRLMVGMPVEKKKYENDLQELENELRECNDKLDDAKARAQ--RSELMSGANNE--GPDPERDGDQMLMEAGKIQDKTKESLMTTQNLIHESKEVGVTTLEELNRQRNQIVRVTDDVMAIEGELARAEKLIKTFGRRMATDKFIQCFTCVNILLLLGVVCFIFFVQ 221
BLAST of mRNA_Ecto-sp13_S_contig1843.5741.1 vs. uniprot
Match: F0YJK0_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJK0_AURAN) HSP 1 Score: 91.7 bits (226), Expect = 2.420e-18 Identity = 75/221 (33.94%), Postives = 109/221 (49.32%), Query Frame = 1
Query: 79 LDQLDGFISTMESGSGDAREDAISEASRSLKRLAGMRRSYNLEIKLLKDPNTKAHYNLEKSQKDSRYATLQSRFDAAKASGESTRDELFGGRRDVESGEAQGKSAEAKLTEADQYQDKTEAAYKNMIGVLQETEATADNTAVELTNQREQLARITEDVTEIDSLLTRADRLVKVFSKRMMTDKFIQCFGCLNVSAMVAIIVYVVVQQVEL-PGGDDNDVPD 738
+D+L + + GD R +SE L R +RRSY LE++LL+D K Y + D+R + R D G S R EL G + K L +A + QD+T+ A + +++ + + EL Q+EQ IT DV I+ LTRAD+L++ F+KRMMTDK I CF +N+ ++ I+VY VV L G D PD
Sbjct: 60 VDELAAIVLLINGTVGDER---VSECDAKLCRAQSIRRSYCLEVRLLRDKAIKRTYEQKLKGLDTRCTEI--RHDIECTRGSSNRQELLG----APPAHSDFKGNANYLDDAGKIQDQTQDALSRTMHLVEASSEVGHSALNELERQQEQARDITTDVMIIEDNLTRADKLIRNFTKRMMTDKLIVCFAFVNMCGLIGIVVYCVVTGRGLGTEGQKEDRPD 271 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1843.5741.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1843.5741.1 >prot_Ecto-sp13_S_contig1843.5741.1 ID=prot_Ecto-sp13_S_contig1843.5741.1|Name=mRNA_Ecto-sp13_S_contig1843.5741.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=242bp MASGDVKYWDTSYGKTLDQLDGFISTMESGSGDAREDAISEASRSLKRLAback to top mRNA from alignment at Ecto-sp13_S_contig1843:7998..12473- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1843.5741.1 ID=mRNA_Ecto-sp13_S_contig1843.5741.1|Name=mRNA_Ecto-sp13_S_contig1843.5741.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4476bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1843:7998..12473- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1843:7998..12473- >mRNA_Ecto-sp13_S_contig1843.5741.1 ID=mRNA_Ecto-sp13_S_contig1843.5741.1|Name=mRNA_Ecto-sp13_S_contig1843.5741.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=726bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1843:7998..12473- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |