mRNA_Ecto-sp13_S_contig1843.5741.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1843.5741.1
Unique NamemRNA_Ecto-sp13_S_contig1843.5741.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1843.5741.1 vs. uniprot
Match: A0A6H5KVH9_9PHAE (t-SNARE coiled-coil homology domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KVH9_9PHAE)

HSP 1 Score: 442 bits (1138), Expect = 2.610e-156
Identity = 236/241 (97.93%), Postives = 240/241 (99.59%), Query Frame = 1
Query:   31 MASGDVKYWDTSYGKTLDQLDGFISTMESGSGDAREDAISEASRSLKRLAGMRRSYNLEIKLLKDPNTKAHYNLEKSQKDSRYATLQSRFDAAKASGESTRDELFGGRRDVESGEAQGKSAEAKLTEADQYQDKTEAAYKNMIGVLQETEATADNTAVELTNQREQLARITEDVTEIDSLLTRADRLVKVFSKRMMTDKFIQCFGCLNVSAMVAIIVYVVVQQVELPGGDDNDVPDPAAGS 753
            MASGDVKYWDTSYGKTLDQLDGFI+TMESGSGDAREDA+SEASRSLKRLAGMRRSYNLEIKL+KDPN KAHYNLEKSQKDSRYATLQSRFDAAKASG+STRDELFGGRRDVESGEAQGKSAEAKLTEADQYQDKTEAAYKNMIGVLQETEATADNTAVELTNQREQLARITEDVTEIDSLLTRADRLVKVFSKRMMTDKFIQCFGCLNVSAMVAIIVYVVVQQVELPGGDDNDVPDPAAGS
Sbjct:    1 MASGDVKYWDTSYGKTLDQLDGFIATMESGSGDAREDAMSEASRSLKRLAGMRRSYNLEIKLIKDPNMKAHYNLEKSQKDSRYATLQSRFDAAKASGDSTRDELFGGRRDVESGEAQGKSAEAKLTEADQYQDKTEAAYKNMIGVLQETEATADNTAVELTNQREQLARITEDVTEIDSLLTRADRLVKVFSKRMMTDKFIQCFGCLNVSAMVAIIVYVVVQQVELPGGDDNDVPDPAAGS 241          
BLAST of mRNA_Ecto-sp13_S_contig1843.5741.1 vs. uniprot
Match: A0A835Z1V1_9STRA (Soluble NSF attachment protein receptor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1V1_9STRA)

HSP 1 Score: 190 bits (483), Expect = 7.400e-57
Identity = 110/226 (48.67%), Postives = 157/226 (69.47%), Query Frame = 1
Query:   40 GDVKYWDTSYGKTLDQLDGFISTMESGSGDAREDAISEASRSLKRLAGMRRSYNLEIKLLKDPNTKAHYNLEKSQKDSRYATLQSRFDAAKAS-GESTRDELFGGRRDVESGEAQGKSAEAKLTEADQYQDKTEAAYKNMIGVLQETEATADNTAVELTNQREQLARITEDVTEIDSLLTRADRLVKVFSKRMMTDKFIQCFGCLNVSAMVAIIVYVVVQQVELPG 714
            GDVKYWDTSYGK LD+L   +  ++  S   +E  I+ A+++++RL GM+RSYNLEIKL++D   KA Y  EK+ KD++   L+++ + AK     S +  LF GR    + E + K+A+ KL +A+  Q+KTEA YKN+I VL++TE     TA  L  QR Q++ ITE+V E+D +LTRA++L+ VFS+R+ TDK IQCF  +NV+A+VAIIVYVV++ V LPG
Sbjct:    2 GDVKYWDTSYGKALDELSDQVKAVKGASAAEKEAKIATATQTVRRLQGMKRSYNLEIKLMRDATQKASYQEEKNAKDAKLTELEAQLEEAKNKPAGSDKVSLFSGRA---AEEPKVKTADQKLDQAEIIQNKTEAKYKNIITVLEQTEEVGSATAATLQEQRAQISEITENVMEMDGMLTRANKLIMVFSRRLATDKMIQCFAFINVAALVAIIVYVVIKNVGLPG 224          
BLAST of mRNA_Ecto-sp13_S_contig1843.5741.1 vs. uniprot
Match: A0A835Z325_9STRA (Soluble NSF attachment protein receptor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z325_9STRA)

HSP 1 Score: 155 bits (392), Expect = 3.360e-43
Identity = 104/239 (43.51%), Postives = 145/239 (60.67%), Query Frame = 1
Query:   40 GDVKYWDTSYGKTLDQLDGFISTM-ESGSGDAREDAISEASRSLKRLAGMRRSYNLEIKLLKDPNTKAHYNLEKSQKDSRYATLQSRFDAA--KASGESTRDELFGGRRDVESGEAQGKSAEAKLTEADQYQDKTEAAYKNMIGVLQETEATADNTAVELTNQREQLARITEDVTEIDSLLTRADRLVKVFSKRMMTDKFIQCFGCLNVSAMVAIIVYVVVQQVELPG-GDDNDVPDPA 744
            GD+++WD +YG  LD L+  +  + E+ +   R+   S A+ +++RL G++RSYNLEIKL +D   KA Y   K+ KD+R   L+++ + A  K   E+ R  LF GR  +E   A    A+AKL +A   QDKTEA YKNM+ VL +TE      A  L +QR Q+  I EDV  +   LTRA +L+ VF KR+ TDKFIQCFG +NV+ +V II+YVV+ +  L   G  N  P PA
Sbjct:    2 GDLQFWDGNYGNVLDGLESQLHQVREAYTPSDRDQLASTAASTVRRLQGIKRSYNLEIKLTRDTGLKAMYTDAKAAKDARLEQLEAQLEEARRKPGREAERAALFDGRA-IEMAPA----ADAKLDQASAIQDKTEARYKNMVTVLAQTEEIGTAAAASLADQRTQMVAIDEDVKVMHENLTRAGKLLHVFGKRLATDKFIQCFGFVNVALLVGIILYVVITKTGLSSSGASNPPPTPA 235          
BLAST of mRNA_Ecto-sp13_S_contig1843.5741.1 vs. uniprot
Match: W7TW41_9STRA (Soluble nsf attachment protein receptor n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TW41_9STRA)

HSP 1 Score: 113 bits (282), Expect = 2.250e-26
Identity = 76/236 (32.20%), Postives = 135/236 (57.20%), Query Frame = 1
Query:   43 DVKYWDTSYGKTLDQLDGFISTMESGSGDAREDAISEASRSLKRLAGMRRSYNLEIKLLKDPNTKAHYNLEKSQK-DSRYATLQSRFDAAKASGESTRDELFGGRRDVESGEAQGKSA--EAKLTEADQYQDKTEAAYKNMIGVLQETEATADNTAVELTNQREQLARITEDVTEIDSLLTRADRLVKVFSKRMMTDKFIQCFGCLNVSAMVAIIVYVVVQQVELPGGDDNDVPDP 741
            D++YWD      L +L+  I  ++S  G  +E  I+++  +LKR+  +++ YN E+++    + + H   EK +  D R A L++    AK   E+ +  LF G +  +      ++A  +  LTEA + QDKTEA+ ++ +G+++ ++    NT  E+  Q+EQ+A IT+ V  ++  LTRAD+L++ F +R+ TDKFIQ F  LN   +V IIV+  V++ ++   + +  P P
Sbjct:    3 DIEYWDGELSSKLAELEQTIGNLKSMRGGDKEAGIAKSEATLKRVREVKKGYNYEMRMSLKNDPRRHEYAEKLKAVDERIAALETELKWAKT--EANKKSLFKGSKGADGSGTLNENATNDTYLTEAKKIQDKTEASLQSALGMVEASKQVGANTVDEVNRQKEQIAEITDTVEAMEDGLTRADKLIRAFGRRIATDKFIQFFFVLNFGLLVGIIVWYAVKKGKVRAPEIHAPPMP 236          
BLAST of mRNA_Ecto-sp13_S_contig1843.5741.1 vs. uniprot
Match: A0A7S2V573_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V573_9STRA)

HSP 1 Score: 109 bits (272), Expect = 2.250e-25
Identity = 77/235 (32.77%), Postives = 121/235 (51.49%), Query Frame = 1
Query:   46 VKYWDTSYGKTLDQLDGFISTMESGSGDAREDAISEASRSLKRLAGMRRSYNLEIKLLKDPNTKAHYNLEKSQKDSRYATLQSRFDAAKASGESTRDELFGGRRDVESGEAQGKSAE---AKLTEADQYQDKTEAAYKNMIGVLQETEATADNTAVELTNQREQLARITEDVTEIDSLLTRADRLVKVFSKRMMTDKFIQCFGCLNVSAMVAIIVYVVVQQVELPGGDDNDVPDP 741
            ++YWD      +DQ +     ++  +  A E A  E    L+   G+++S+  E++LL D   + HY ++  + + R + L  R + ++ + E  ++ L  G +    G   G S +   A L +A++ QD  E AY      L E    A  T  EL NQRE++  ITE    ID LLTRADRL++ F +RM TD+ IQ F  +N   ++A+I+Y +V    L GG  +  PDP
Sbjct:    1 MEYWDERINSLIDQGEREAEKLDMDNETAME-ACQEIEHCLQSAKGVKQSFTTELRLLGDKVEEQHYKMKLRRYEERMSALTERLNGSREAIE--KEHLMRGAQQRRGGGGFGDSDDPNDAMLGKAEKLQDDIEDAYGRAENDLDEIRQLAPETLAELRNQREKIQDITETAERIDDLLTRADRLLRTFGRRMATDRLIQVFFFINACLLLAVIIYAIVSDSNLTGGSGSKAPDP 232          
BLAST of mRNA_Ecto-sp13_S_contig1843.5741.1 vs. uniprot
Match: B8BZJ7_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BZJ7_THAPS)

HSP 1 Score: 104 bits (260), Expect = 1.150e-23
Identity = 67/213 (31.46%), Postives = 113/213 (53.05%), Query Frame = 1
Query:  133 REDAISEASRSLKRLAGMRRSYNLEIKLLKDPNTKAHYNLEKSQKDSRYATLQSRFDAAKASGESTRDELFGGRRDVES------GEAQGKSA-EAKLTEADQYQDKTEAAYKNMIGVLQETEATADNTAVELTNQREQLARITEDVTEIDSLLTRADRLVKVFSKRMMTDKFIQCFGCLNVSAMVAIIVYVVVQQVELPGGDDNDVPDPAAG 750
            +   +  A + L+   G ++SY +E +L+ DPN K  Y  + S+     ++  +   A K  G   R ELF G R   S      GE  G+ A ++ L++ +  QDKT+ +  N   ++  ++   + T  EL  QREQ+  +  +   I+  L RAD+L+K F KRM TD+FIQCF C+N+  +V +++Y ++++  L GG++   P    G
Sbjct:    3 KASTLDRAEKKLRAANGTKKSYKMETRLVADPNQKRMYENKLSRLSEELSSCANDLKAMK--GGMQRGELFVGARGKSSRGGGEYGEMSGEEAGDSMLSDMNNIQDKTKNSLANTKHMVAASKEVGEATMEELLRQREQIRNVDNEAMRIEDNLQRADKLIKTFGKRMATDRFIQCFACINILLLVGVVIYTILKKGSLTGGENEGAPASPVG 213          
BLAST of mRNA_Ecto-sp13_S_contig1843.5741.1 vs. uniprot
Match: A0A7S4A3K9_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A3K9_9STRA)

HSP 1 Score: 105 bits (262), Expect = 2.650e-23
Identity = 76/230 (33.04%), Postives = 121/230 (52.61%), Query Frame = 1
Query:   37 SGDVKYWDTSYGKTLDQLDGFISTMESGSGDAREDAISEASRSLKRLAGMRRSYNLEIKLLKDPNTKAHYNLEKSQKDSRYATLQSRFDAAKASGESTRDELFGGRRDVESGEAQGKSAEAKLTEADQYQDKTEAAYKNMIGVLQETEATADNTAVELTNQREQLARITEDVTEIDSLLTRADRLVKVFSKRMMTDKFIQCFGCLNVSAMVAIIVYVVVQQVELPGGDDN 726
            S D+ YW  SY  ++D  D  ++++ +   D R   I  A   LKR  G+++SY LE++LL+D   K +Y     + D R   L+ R +  +   E  R  L    ++  +   + K  +  L +A   QDKTE   +    +++ ++    +T  EL  Q++Q+  ++ D+  I+  L+RADRL++ F+KRMMTDK I  F  LN+ A+  IIVY VV    L  GDD 
Sbjct:   60 STDIDYWSDSYRSSIDDADRLVTSLGACEPDERLSIIDAADAKLKRAGGIKKSYKLELRLLRDRELKRNYEESLRELDDRRDELKRRVEEHRERTE--RSTLL---QETPAAFGEHKGNDYYLDKAHSLQDKTENTLERTTQMIEASKEVGASTLSELERQQDQIKDVSADIMLIEDNLSRADRLIRNFTKRMMTDKLIMGFAFLNMCALTGIIVYCVVTGKVL--GDDK 282          
BLAST of mRNA_Ecto-sp13_S_contig1843.5741.1 vs. uniprot
Match: A0A7S2P5B9_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P5B9_9STRA)

HSP 1 Score: 101 bits (252), Expect = 3.450e-22
Identity = 64/230 (27.83%), Postives = 117/230 (50.87%), Query Frame = 1
Query:   43 DVKYWDTSYGKTLDQLDGFISTMESGSGDAREDAISEASRSLKRLAGMRRSYNLEIKLLKDPNTKAHYNLEKSQKDSRYATLQSRFDAAKASGESTRDELFGGRRDVESGEAQGKSAEAKLTEADQYQDKTEAAYKNMIGVLQETEATADNTAVELTNQREQLARITEDVTEIDSLLTRADRLVKVFSKRMMTDKFIQCFGCLNVSAMVAIIVYVVVQQVELPGGDDNDV 732
            D++YW+ +  + ++ L   +  + + +G  ++    EA + L+   G +RSY LE++++K+   +  Y  +    +++   L       K+S  +T+D L  G    ++G    +  +A + EA   QDKT+ +      ++ E++    NT   L  QR Q+ RI          L RAD L+K FSKRM  DKFIQC  C+N+S  + +I++++ +      GDD+ +
Sbjct:    3 DIEYWEETLKEEIEDLSTVLGLVVAQTGSKQKQKFDEADKKLRDANGTKRSYKLEMRVIKNATQRKMYEKQLKDHETKLKALADHLKNLKSS--ATKDTLLEG---ADTGRTPEQEGDAMMNEARNTQDKTQTSLDRTKQLVAESKDIGQNTLATLEEQRAQIERIDAHADRTMENLGRADLLIKNFSKRMANDKFIQCCACINISLFIGVILFLIFKNRSDDDGDDSSI 227          
BLAST of mRNA_Ecto-sp13_S_contig1843.5741.1 vs. uniprot
Match: A0A7S1FMQ8_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FMQ8_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 3.400e-21
Identity = 69/224 (30.80%), Postives = 115/224 (51.34%), Query Frame = 1
Query:   40 GDVKYWDTSYGKTLDQLDGFISTME---SGSGDAREDAISEASRSLKRLAGMRRSYNLEIKLLKD-PNTKAHYNLEKSQKDSRYATLQSRFDAAKASGESTRDELFGGRRDVESGEAQGKSAEAKLTEADQYQDKTEAAYKNMIGVLQETEATADNTAVELTNQREQLARITEDVTEIDSLLTRADRLVKVFSKRMMTDKFIQCFGCLNVSAMVAIIVYVVVQQ 699
            GD++YW  S+   L  L   I  ++        A + AI  A   LK+ + +++SY LE++L+   P  K  Y  +  + ++       + D AKA  +  R EL  G  +   G    +  +  L EA + QDKT+ +      ++ E++     T  EL  QR Q+ R+T+DV  I+  L RA++L+K F +RM TDKFIQCF C+N+  ++ ++ ++   Q
Sbjct:    2 GDIEYWRDSFQSELSTLPEIIRDIDRVRKKGPYAIQSAIRNAEDQLKKCSNIQKSYKLELRLMVGMPVEKKKYENDLQELENELRECNDKLDDAKARAQ--RSELMSGANNE--GPDPERDGDQMLMEAGKIQDKTKESLMTTQNLIHESKEVGVTTLEELNRQRNQIVRVTDDVMAIEGELARAEKLIKTFGRRMATDKFIQCFTCVNILLLLGVVCFIFFVQ 221          
BLAST of mRNA_Ecto-sp13_S_contig1843.5741.1 vs. uniprot
Match: F0YJK0_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJK0_AURAN)

HSP 1 Score: 91.7 bits (226), Expect = 2.420e-18
Identity = 75/221 (33.94%), Postives = 109/221 (49.32%), Query Frame = 1
Query:   79 LDQLDGFISTMESGSGDAREDAISEASRSLKRLAGMRRSYNLEIKLLKDPNTKAHYNLEKSQKDSRYATLQSRFDAAKASGESTRDELFGGRRDVESGEAQGKSAEAKLTEADQYQDKTEAAYKNMIGVLQETEATADNTAVELTNQREQLARITEDVTEIDSLLTRADRLVKVFSKRMMTDKFIQCFGCLNVSAMVAIIVYVVVQQVEL-PGGDDNDVPD 738
            +D+L   +  +    GD R   +SE    L R   +RRSY LE++LL+D   K  Y  +    D+R   +  R D     G S R EL G         +  K     L +A + QD+T+ A    + +++ +     +   EL  Q+EQ   IT DV  I+  LTRAD+L++ F+KRMMTDK I CF  +N+  ++ I+VY VV    L   G   D PD
Sbjct:   60 VDELAAIVLLINGTVGDER---VSECDAKLCRAQSIRRSYCLEVRLLRDKAIKRTYEQKLKGLDTRCTEI--RHDIECTRGSSNRQELLG----APPAHSDFKGNANYLDDAGKIQDQTQDALSRTMHLVEASSEVGHSALNELERQQEQARDITTDVMIIEDNLTRADKLIRNFTKRMMTDKLIVCFAFVNMCGLIGIVVYCVVTGRGLGTEGQKEDRPD 271          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1843.5741.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5KVH9_9PHAE2.610e-15697.93t-SNARE coiled-coil homology domain-containing pro... [more]
A0A835Z1V1_9STRA7.400e-5748.67Soluble NSF attachment protein receptor n=1 Tax=Tr... [more]
A0A835Z325_9STRA3.360e-4343.51Soluble NSF attachment protein receptor n=1 Tax=Tr... [more]
W7TW41_9STRA2.250e-2632.20Soluble nsf attachment protein receptor n=2 Tax=Mo... [more]
A0A7S2V573_9STRA2.250e-2532.77Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
B8BZJ7_THAPS1.150e-2331.46Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S4A3K9_9STRA2.650e-2333.04Hypothetical protein (Fragment) n=2 Tax=Pelagomona... [more]
A0A7S2P5B9_9STRA3.450e-2227.83Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S1FMQ8_9STRA3.400e-2130.80Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
F0YJK0_AURAN2.420e-1833.94Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1843contigEcto-sp13_S_contig1843:7998..12473 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score112.1
Seed ortholog evalue3.7e-22
Seed eggNOG ortholog35128.Thaps4535
Model size756
Hectar predicted targeting categoryother localisation
Exons6
EggNOG OGs29I5R@1,2RRCR@2759,2XCW0@2836
Ec32 ortholog descriptionSoluble NSF Attachment Protein (SNAP) Receptor (SNARE)
Ec32 orthologEc-20_002310.1
Cds size726
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1843.5741.1prot_Ecto-sp13_S_contig1843.5741.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1843 7998..12443 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462947.5634465-CDS-Ecto-sp13_S_contig1843:7997..81261681462947.5634465-CDS-Ecto-sp13_S_contig1843:7997..8126Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1843 7998..8126 -
1681462947.5755796-CDS-Ecto-sp13_S_contig1843:8751..89281681462947.5755796-CDS-Ecto-sp13_S_contig1843:8751..8928Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1843 8752..8928 -
1681462947.585877-CDS-Ecto-sp13_S_contig1843:10186..103241681462947.585877-CDS-Ecto-sp13_S_contig1843:10186..10324Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1843 10187..10324 -
1681462947.596594-CDS-Ecto-sp13_S_contig1843:10695..107701681462947.596594-CDS-Ecto-sp13_S_contig1843:10695..10770Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1843 10696..10770 -
1681462947.6059933-CDS-Ecto-sp13_S_contig1843:11898..120601681462947.6059933-CDS-Ecto-sp13_S_contig1843:11898..12060Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1843 11899..12060 -
1681462947.6159024-CDS-Ecto-sp13_S_contig1843:12398..124431681462947.6159024-CDS-Ecto-sp13_S_contig1843:12398..12443Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1843 12399..12443 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462947.6259546-UTR-Ecto-sp13_S_contig1843:12443..124731681462947.6259546-UTR-Ecto-sp13_S_contig1843:12443..12473Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1843 12444..12473 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1843.5741.1

>prot_Ecto-sp13_S_contig1843.5741.1 ID=prot_Ecto-sp13_S_contig1843.5741.1|Name=mRNA_Ecto-sp13_S_contig1843.5741.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=242bp
MASGDVKYWDTSYGKTLDQLDGFISTMESGSGDAREDAISEASRSLKRLA
GMRRSYNLEIKLLKDPNTKAHYNLEKSQKDSRYATLQSRFDAAKASGEST
RDELFGGRRDVESGEAQGKSAEAKLTEADQYQDKTEAAYKNMIGVLQETE
ATADNTAVELTNQREQLARITEDVTEIDSLLTRADRLVKVFSKRMMTDKF
IQCFGCLNVSAMVAIIVYVVVQQVELPGGDDNDVPDPAAGS*
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mRNA from alignment at Ecto-sp13_S_contig1843:7998..12473-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1843.5741.1 ID=mRNA_Ecto-sp13_S_contig1843.5741.1|Name=mRNA_Ecto-sp13_S_contig1843.5741.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4476bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1843:7998..12473- (Ectocarpus species13 EcNAP12_S_4_19m)
CTGCTGCTGTTCGGAGTTGCAGCAGCCACCATGGCGTCCGGCGATGTCAA GTACTGGGACACCAGCTACGGCAAGGTGGGGATCAGCAAAGCGGTCGCCT TCCCTCTATTGACTCGAAGGACACCAGCTCCACGGCCTGTCATGTTTATC TACCTTGGGTTACCTATTCCGTTTGTGCTAGCCGAAAACACTGGCACTTA CCAAACGGCACTAAACAGCGCCGCCCTCTACCGGGTTTGTTTCATTTGTA GACTCTCGACCAGCTTACTCAATGGCTTGCTTACGCATACCACGCCCTGT CCATCGGCGGTGGTGGTGTTTGCTTGCTTGCTTCGCCGCAGACTCTCGAT ATCTTTCAACGATGTACCACGCCTTGTCAATTGCCGGCGGTGGTGTTTGT TGGATTGCCGCAGACTCTCGACCAGCTCGATGGCTTCATCTCCACCATGG AGTCCGGCAGCGGAGACGCGCGAGAGGACGCCATATCGGAAGCGAGCAGG TCGCTCAAGCGTCTGGCGGGGATGAGGAGGAGCTACAACCTCGAGATCAA GCTTCTCAAAGACCCCAACACGAAGGTGCGTGTTGGCAAAAAAAAAGTCC ACCTCCCCGGAATACGTCACGGCGCTTCGCGCGCTAGCCTTGTCCGGTGA AAACCCGGCGTGCTCCGTTCCGGTTTTGTAGGGATGCGAAGTCAACGGTC TAACGACTTCGGCATGCATGCACGGCATTGGGCACACCCTGCCCCCTCCT TGTGTTTCTCTTGAAGATTCCGACCGGCGTGGGGGCCGGAATTGGTTGGT TGCGGAAGAGGTGCTGCTGTTCTTACGTTGGGGGACTCGAGCAGCAGGGT TGTGGTTTGCATTCGTGTCGGAGCAGGGATCTCGAATGCATGTGTACGGG TGCCTGATGTAGTGTTTTGCAGTTCTTGTGTGGTTTGCTGCTGTGTTGGA GAAGGAGGAAGAGTCTCGTATGCATACATACGTACACGTGCGTGCATGTT TGTGTGTTGAAGGAACTACACACCTCTTGGCTGGGGCTAGCGTGGCTTTT TGTTTCGTCCCTCGATTGGGTGAAAGCCTCGTGATCACGAAAAGGATCGC TTCTCGTAACGATCGGGTTGCGGTATGCACACACGGCACGAAAGAAGAGG GAGGTGTTAGATGGACATGGCAGCTGTCTTGATTGTGACGACACCCACAA TGATGGCAAGGGGCCCGTGCCCAACGGGGGTTTACACGCCTTGCCAGAGG AGATGAGTATCCACCATGGACCACGTTTGGTTGGAGCCACTTGCGCGAAC ATGTTGGATCATAGTGATGCAGAATACGCGAATACTCATGGTGAGAGTAG CAGTACCCTTTTGGAGCCCTGAGCCCAGTAGATTGCCTACCTCCCGCTTG CTGCGGTTACTCGTGTGAGCGTGGTCGTGTCGGCACGGTGTGTAGACGGT TCGGGGCCGTCTCTCCTCTGTTTCCACGGAACGTGTGGTAGTGTTTGTCG CCTACGCCGGCTTCTTGTGTCCGGGGTGCTCACAGGGGGGGGGAACGGGA GGGTCACAACACGTTCCCGCCACCTCTGTCATTCTGGGGCCGGGGCCACT TAGTGGTATTGAATCCATGACTGATGCCCACGCCCACCCTCCGTTGTTAC CCTGTGCTTACCGTCCAGAGACCCCCTCCGTCTGCTCAACCTGCCGCAAC CAGGCACATTACAACTTGGAAAAGTCCCAGAAGGACTCCCGTTACGCGAC GCTCCAAAGCAGATTCGACGCCGCAAAGGTACGATAGCTCGCCAAACACA GAAGGCAACGTGTTGTGCCAAATGCGGTGCGATGTGGCGAGCGGTGTGGC TCGGTATCCCCGTCGGTCTTGCCGTGTGCCGCTTAGTTTACGGAGACCTC TTGGAGGGAGACCCTTCTGCCGTAACCAAAATCATCTGTGTAGGTGGTGT TGGACGATGGCGATAACTTGCGCTGGAAGTCGCCCCCGACAGGGTACACC CAACCCCGAAAATCTCGACTTCAGAGCGGCAACATGGACGGCTGTGCCGG TTTACGCGCTGCATTGCTGTACCGCACGCACCCCATGCTTTTTTGTCCGC CGGCCGCTGGGCGCGTGTGTGTGGCTCGTCGCCCCCGGCCTGTCTGCAGG CAAGCGGTGAGAGCACGCGAGACGAGCTATTCGGGGGTCGGAGAGACGTG GAAAGCGGGGAGGCGCAGGGCAAGTCGGCGGAGGCCAAGCTGACCGAGGC GGACCAGTACCAGGATAAGACAGAGGCGGCCTACAAGGTACATGCCGCTA TTTTCGCCTACTGACTGCTACGTCTGAAGTTGTCCCGAGCCATGCGCACG CAGCCTCCTTCCCTGTTGCGGATCTCGAACAGCTCACCCCCGATGCTCTC AGTCATACGTAGATGGGTGTGAATGCGCGCTGCATGGCTGGAGACCCCTG GTTCTCTAGCTTGCGCGGCGACAAACGACGCTTTCTACCCTGGTCTCCTC TTGTCCTTCGACGAGCAGTTTGTACGCCACCTGCCTGCGTTTTGCGCGCT CTGCTGGGGTCGGGCTGCCGGCTGCGACTGCTGATGGTTTCAGACGCATG CGTGTACCTAGCTTTGGTTCGAAAGTGATTTTTTGTCGTCGATGGCAACA CAACAACACCCAGTCGCTCATAATTTGCCGGCTTTTGCTGTTTTTTTCAT GGGGTACTCTGGCTTGTTCTCAATCTCGCTCGTTGTGTGCCAGCTGATGG AGCCAGCCAAACCTTGTGGTCAGCGATGCAGTCCCGACTAGCGCTTGCCG CGATAAATTTTGCGGGGTAGAATATGCTCGAGGCCGTGCGTTTGAGTTGT TTGAGAGAGAAGGGCGAGCTCGGAGGGGCGCATGTTCACACCCCCAGTGT GCACACACGATTTGTACCTGCTGCGTTCGCGCCCCGTGTTTTGACATATG ATGCACCTGCGGTTCTCGAGGTGCCCGTCTTGTGATACATTGCAGAATGG TGTTCTATGACTTGGGGCGGTAGTCAAAATAACACACGCATGTCTCCACG CCGCGGTCTCCTACGATGGCTGCTCGGGTTGGTGCCCTAGCTGACTGTCA TCTTTGCCTCGTCTTGTCTTGTTTGTTCTCGTCGAAGAGCGAGGTGTTTC CTACGTTGCCCGAAGGGCCTGCGTGGAAAGGAGTGAGGCGGAATCGATTA CCACCCTGTATACAGATTTGTGATAATGTTCTTGAATCGTTGAGGTTATA TGGGCTGTTCGAGGAAAAAATACGCCAGCTGTGTGAGCTTGGGAAACGTC ACACACCGCAGCTAAGCAGTGAGCTGTGAGTCGGTCCTGCTGCCTGCTTT TATTTTGATCTTGCATCACCCCTTGATGACACTGCTGTGCTCTCTCATCA ACCCACTCCAGAGGGATGACTTGTTTTGTGTGGATGTATTCAAAGGAGTT CGTCACATTGAATCTGTCTGAGCGGCTTAAAATATTAGTAACAGCGTCAC CCGCAACTAAATATACGGACTGCTCCCGAACACGACGAAAAACAGAACAT GATAGGGGTGCTCCAGGAGACGGAAGCGACGGCGGACAACACCGCGGTGG AGCTGACCAATCAGCGTGAGCAGCTCGCGCGCATCACCGAGGACGTGACC GAGATCGATTCGCTCTTGACAAGGGCGGACCGACTGGTTAAGGTCTTCTC CAAGCGGATGATGACCGATAAGGTGCGTGTTTTTTTCTATTTTTTTCTTT TTTCTTGAGTCGTGATGTGGACAGGCATTTAGTCGAGCGCAAGTCTTTCT CGTGCTCGCACAACGTATGATACAGCTGTACGGTGTTGTACGTCGGCGGG TATCTCGCGTTCTCAAGCGCTTTCTATCCACAGAACGACATTTTATCACG ACGCGGCATGGGGTGACGCTATTGACAACGAAAAGGCAACTGGTAACCCC TCGTTGTTTCTCTTGCTGAGAAATGCCGACCGTGCGGGTTTCGCCTGGAT TTGTTCTGTTGTTGTGGCCCCTGTCTTGTTCACGCTCGTGACCTGACGCG GATTCTTAGTTGATGGCTGGCAACATATGATGCCAAAGCTACTTTCAAGC GTGTGAGCGCAGAATCAATCGTCTCTTGCGTTTGGTGTTTGGCTGGCTGT GTCCAATCGAACGTTCCGCCTTCTGTCGGTGGTGAGCTTGCTAACGTGAA CTAGATCTCTCCCTCCACTCCGCCCTCCACCAACACGAACGCGCGTTCTT GCTCGCTCGCTCGCTCTCTGTGTTTCTCTCTGTGTCGCTGTCTCTTGTCT GTCTGTTGTGTGTTGTGCGTGTATGTCTCTCTCTGTTTCTCCCTCAGTTC ATCCAATGCTTCGGGTGCTTAAACGTGAGCGCAATGGTGGCGATCATCGT CTACGTGGTGGTCCAGCAAGTAGAGTTGCCGGGGGGCGACGACAACGATG TCCCTGACCCAGCCGCAGGAAGTTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1843:7998..12473-

>mRNA_Ecto-sp13_S_contig1843.5741.1 ID=mRNA_Ecto-sp13_S_contig1843.5741.1|Name=mRNA_Ecto-sp13_S_contig1843.5741.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=726bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1843:7998..12473- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGTCCGGCGATGTCAAGTACTGGGACACCAGCTACGGCAAGACTCT
CGACCAGCTCGATGGCTTCATCTCCACCATGGAGTCCGGCAGCGGAGACG
CGCGAGAGGACGCCATATCGGAAGCGAGCAGGTCGCTCAAGCGTCTGGCG
GGGATGAGGAGGAGCTACAACCTCGAGATCAAGCTTCTCAAAGACCCCAA
CACGAAGGCACATTACAACTTGGAAAAGTCCCAGAAGGACTCCCGTTACG
CGACGCTCCAAAGCAGATTCGACGCCGCAAAGGCAAGCGGTGAGAGCACG
CGAGACGAGCTATTCGGGGGTCGGAGAGACGTGGAAAGCGGGGAGGCGCA
GGGCAAGTCGGCGGAGGCCAAGCTGACCGAGGCGGACCAGTACCAGGATA
AGACAGAGGCGGCCTACAAGAACATGATAGGGGTGCTCCAGGAGACGGAA
GCGACGGCGGACAACACCGCGGTGGAGCTGACCAATCAGCGTGAGCAGCT
CGCGCGCATCACCGAGGACGTGACCGAGATCGATTCGCTCTTGACAAGGG
CGGACCGACTGGTTAAGGTCTTCTCCAAGCGGATGATGACCGATAAGTTC
ATCCAATGCTTCGGGTGCTTAAACGTGAGCGCAATGGTGGCGATCATCGT
CTACGTGGTGGTCCAGCAAGTAGAGTTGCCGGGGGGCGACGACAACGATG
TCCCTGACCCAGCCGCAGGAAGTTAA
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