prot_Ecto-sp13_S_contig18412.5728.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig18412.5728.1
Unique Nameprot_Ecto-sp13_S_contig18412.5728.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length175
Homology
BLAST of mRNA_Ecto-sp13_S_contig18412.5728.1 vs. uniprot
Match: D8LIK9_ECTSI (Beta strand repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIK9_ECTSI)

HSP 1 Score: 303 bits (775), Expect = 3.090e-92
Identity = 157/172 (91.28%), Postives = 161/172 (93.60%), Query Frame = 0
Query:    4 ATSTAQETATDAVSTDPGTVSSRSPSATLGLLMIFQIQFLSSLRLLEANITAPFRRMLDQLKWLNLHFDVDFVGFPGCDGEDSFTGAEDDNGVWVFNTFAVFGFMALLILCHILLLSYIEASWLSKAQLGMDIFPPRGAGVPALRVPGSVNLGGSHDQQRLPASGDTGGVCA 175
            ATSTAQETATDAVSTDPGTVSSRSPSATLGLLMIFQIQFLSSLRLLEANITAPFRRMLDQLKWLNLHFDVDFVGF GCD EDSFT  EDDNG+W FNTFAVFGFMALLILCHILLLSYIEASWLS+AQLG+DI PPRGAG PALR+PGSVNL GSHDQQRL ASG  GGVCA
Sbjct:  987 ATSTAQETATDAVSTDPGTVSSRSPSATLGLLMIFQIQFLSSLRLLEANITAPFRRMLDQLKWLNLHFDVDFVGFAGCDDEDSFTWTEDDNGMWAFNTFAVFGFMALLILCHILLLSYIEASWLSQAQLGVDILPPRGAGFPALRLPGSVNLRGSHDQQRLLASGGAGGVCA 1158          
BLAST of mRNA_Ecto-sp13_S_contig18412.5728.1 vs. uniprot
Match: D7G3P1_ECTSI (Similar to Mucin-1 (MUC-1) (Polymorphic epithelial mucin) (PEM) (PEMT) (Episialin) (Tumor-associated mucin) (Carcinoma-associated mucin) (Tumor-associated epithelial membrane antigen) (EMA) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3P1_ECTSI)

HSP 1 Score: 138 bits (347), Expect = 1.530e-34
Identity = 68/114 (59.65%), Postives = 88/114 (77.19%), Query Frame = 0
Query:   19 DPGTVSSRSPSATLGLLMIFQIQFLSSLRLLEANITAPFRRMLDQLKWLNLHFDVDFVGFPGCDGEDS-FTGAEDDNGVWVFNTFAVFGFMALLILCHILLLSYIEASWLSKAQ 131
            DP +VS+RSP ATLGLLM+FQ+QF+S LR++EANIT PF   LD LKW+NLHF+VD + F  CD E++ F  + DDNG W  NTF VF  + +LI+ HILL+SY+EA+WLS+A 
Sbjct:  506 DPSSVSTRSPGATLGLLMVFQMQFVSLLRMMEANITTPFMNFLDSLKWMNLHFEVD-ISFLSCDEEETRFNWSNDDNGTWALNTFLVFFLLLVLIILHILLVSYLEAAWLSQAN 618          
BLAST of mRNA_Ecto-sp13_S_contig18412.5728.1 vs. uniprot
Match: A0A6H5LAH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAH5_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 1.690e-30
Identity = 62/102 (60.78%), Postives = 78/102 (76.47%), Query Frame = 0
Query:   31 TLGLLMIFQIQFLSSLRLLEANITAPFRRMLDQLKWLNLHFDVDFVGFPGCDGEDS-FTGAEDDNGVWVFNTFAVFGFMALLILCHILLLSYIEASWLSKAQ 131
            TLGLLM+FQ+QF+S LR+LEANIT PF   LD LKW+NLHF+VD   F  CDGE++ F  + DDNG W  NTF VF  + +LI+ HILL+SY+EA+WLS+A 
Sbjct:  841 TLGLLMVFQMQFVSLLRMLEANITTPFMNFLDSLKWMNLHFEVDLT-FLSCDGEETRFDWSNDDNGTWALNTFLVFSLLLVLIILHILLVSYLEAAWLSQAN 941          
BLAST of mRNA_Ecto-sp13_S_contig18412.5728.1 vs. uniprot
Match: A0A6H5JU12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU12_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 6.710e-22
Identity = 48/50 (96.00%), Postives = 49/50 (98.00%), Query Frame = 0
Query:   35 LMIFQIQFLSSLRLLEANITAPFRRMLDQLKWLNLHFDVDFVGFPGCDGE 84
            LMIFQIQFLSSLRLLEANITAPFRRMLD+LKWLNLHFDVDFVGF GCDGE
Sbjct: 1906 LMIFQIQFLSSLRLLEANITAPFRRMLDRLKWLNLHFDVDFVGFAGCDGE 1955          
BLAST of mRNA_Ecto-sp13_S_contig18412.5728.1 vs. uniprot
Match: D7G8U8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8U8_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 1.120e-6
Identity = 48/139 (34.53%), Postives = 76/139 (54.68%), Query Frame = 0
Query:   20 PGTVSSRSPSATLGLLMIFQIQFLSSLRLLEA-NITAPF-RRMLDQLKWLNLHFDVDFVGFP-GCDGEDSFTGAED--DNGVWVFNTFAVFGFMALLILCHILLLSYIEASWLSKAQL--GMDIFPPRGAGVPALRVPG 151
            PG  S RSPSA++G LM+ Q+QFL++L L+++ + +A F    ++ L+W+NL   +     P  C+  D    A+D  D GV+  NT  V   +  + L H+  +S +EA WL++  +  G  +   R  G PA R  G
Sbjct: 1620 PGEASFRSPSASIGFLMMMQLQFLATLSLVQSVHDSASFLSSFVENLRWVNLWLPMPSSLTPDSCEIAD----AQDLIDEGVFFGNTTLVLAILLGIFLIHVGAVSAVEAYWLAQRCMSPGGGLIRHRPNGSPASRTSG 1754          
BLAST of mRNA_Ecto-sp13_S_contig18412.5728.1 vs. uniprot
Match: A0A6H5KSF8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSF8_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 2.800e-6
Identity = 40/115 (34.78%), Postives = 66/115 (57.39%), Query Frame = 0
Query:   20 PGTVSSRSPSATLGLLMIFQIQFLSSLRLLEA--NITAPFRRMLDQLKWLNLHFDVDFVGFPG-CDGEDSFTGAED--DNGVWVFNTFAVFGFMALLILCHILLLSYIEASWLSK 129
            PG  S RSPSA++GLLM+ Q+QFL++L L+++  +  +     ++ L+W+NL   +     P  C+  D    A+D  D GV+  NT  V   +  + L H+  +S +EA WL++
Sbjct: 1802 PGEASFRSPSASIGLLMMTQLQFLATLSLVQSVHDSASSLSSFVENLRWVNLWLPMPSSLSPNSCEIAD----AQDLIDEGVFFGNTTLVLAILLGIFLIHVGAVSAVEAYWLAQ 1912          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18412.5728.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LIK9_ECTSI3.090e-9291.28Beta strand repeat-containing protein n=1 Tax=Ecto... [more]
D7G3P1_ECTSI1.530e-3459.65Similar to Mucin-1 (MUC-1) (Polymorphic epithelial... [more]
A0A6H5LAH5_9PHAE1.690e-3060.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU12_9PHAE6.710e-2296.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8U8_ECTSI1.120e-634.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KSF8_9PHAE2.800e-634.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 97..122
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 123..175
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..96
NoneNo IPR availableTMHMMTMhelixcoord: 97..119

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18412contigEcto-sp13_S_contig18412:1..3397 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18412.5728.1mRNA_Ecto-sp13_S_contig18412.5728.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig18412 1..3397 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig18412.5728.1 ID=prot_Ecto-sp13_S_contig18412.5728.1|Name=mRNA_Ecto-sp13_S_contig18412.5728.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=175bp
GTEATSTAQETATDAVSTDPGTVSSRSPSATLGLLMIFQIQFLSSLRLLE
ANITAPFRRMLDQLKWLNLHFDVDFVGFPGCDGEDSFTGAEDDNGVWVFN
TFAVFGFMALLILCHILLLSYIEASWLSKAQLGMDIFPPRGAGVPALRVP
GSVNLGGSHDQQRLPASGDTGGVCA
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