mRNA_Ecto-sp13_S_contig18412.5728.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig18412.5728.1 vs. uniprot
Match: D8LIK9_ECTSI (Beta strand repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIK9_ECTSI) HSP 1 Score: 303 bits (775), Expect = 3.090e-92 Identity = 157/172 (91.28%), Postives = 161/172 (93.60%), Query Frame = 1
Query: 10 ATSTAQETATDAVSTDPGTVSSRSPSATLGLLMIFQIQFLSSLRLLEANITAPFRRMLDQLKWLNLHFDVDFVGFPGCDGEDSFTGAEDDNGVWVFNTFAVFGFMALLILCHILLLSYIEASWLSKAQLGMDIFPPRGAGVPALRVPGSVNLGGSHDQQRLPASGDTGGVCA 525
ATSTAQETATDAVSTDPGTVSSRSPSATLGLLMIFQIQFLSSLRLLEANITAPFRRMLDQLKWLNLHFDVDFVGF GCD EDSFT EDDNG+W FNTFAVFGFMALLILCHILLLSYIEASWLS+AQLG+DI PPRGAG PALR+PGSVNL GSHDQQRL ASG GGVCA
Sbjct: 987 ATSTAQETATDAVSTDPGTVSSRSPSATLGLLMIFQIQFLSSLRLLEANITAPFRRMLDQLKWLNLHFDVDFVGFAGCDDEDSFTWTEDDNGMWAFNTFAVFGFMALLILCHILLLSYIEASWLSQAQLGVDILPPRGAGFPALRLPGSVNLRGSHDQQRLLASGGAGGVCA 1158
BLAST of mRNA_Ecto-sp13_S_contig18412.5728.1 vs. uniprot
Match: D7G3P1_ECTSI (Similar to Mucin-1 (MUC-1) (Polymorphic epithelial mucin) (PEM) (PEMT) (Episialin) (Tumor-associated mucin) (Carcinoma-associated mucin) (Tumor-associated epithelial membrane antigen) (EMA) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3P1_ECTSI) HSP 1 Score: 138 bits (347), Expect = 1.530e-34 Identity = 68/114 (59.65%), Postives = 88/114 (77.19%), Query Frame = 1
Query: 55 DPGTVSSRSPSATLGLLMIFQIQFLSSLRLLEANITAPFRRMLDQLKWLNLHFDVDFVGFPGCDGEDS-FTGAEDDNGVWVFNTFAVFGFMALLILCHILLLSYIEASWLSKAQ 393
DP +VS+RSP ATLGLLM+FQ+QF+S LR++EANIT PF LD LKW+NLHF+VD + F CD E++ F + DDNG W NTF VF + +LI+ HILL+SY+EA+WLS+A
Sbjct: 506 DPSSVSTRSPGATLGLLMVFQMQFVSLLRMMEANITTPFMNFLDSLKWMNLHFEVD-ISFLSCDEEETRFNWSNDDNGTWALNTFLVFFLLLVLIILHILLVSYLEAAWLSQAN 618
BLAST of mRNA_Ecto-sp13_S_contig18412.5728.1 vs. uniprot
Match: A0A6H5LAH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAH5_9PHAE) HSP 1 Score: 126 bits (317), Expect = 1.690e-30 Identity = 62/102 (60.78%), Postives = 78/102 (76.47%), Query Frame = 1
Query: 91 TLGLLMIFQIQFLSSLRLLEANITAPFRRMLDQLKWLNLHFDVDFVGFPGCDGEDS-FTGAEDDNGVWVFNTFAVFGFMALLILCHILLLSYIEASWLSKAQ 393
TLGLLM+FQ+QF+S LR+LEANIT PF LD LKW+NLHF+VD F CDGE++ F + DDNG W NTF VF + +LI+ HILL+SY+EA+WLS+A
Sbjct: 841 TLGLLMVFQMQFVSLLRMLEANITTPFMNFLDSLKWMNLHFEVDLT-FLSCDGEETRFDWSNDDNGTWALNTFLVFSLLLVLIILHILLVSYLEAAWLSQAN 941
BLAST of mRNA_Ecto-sp13_S_contig18412.5728.1 vs. uniprot
Match: A0A6H5JU12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU12_9PHAE) HSP 1 Score: 102 bits (253), Expect = 6.710e-22 Identity = 48/50 (96.00%), Postives = 49/50 (98.00%), Query Frame = 1
Query: 103 LMIFQIQFLSSLRLLEANITAPFRRMLDQLKWLNLHFDVDFVGFPGCDGE 252
LMIFQIQFLSSLRLLEANITAPFRRMLD+LKWLNLHFDVDFVGF GCDGE
Sbjct: 1906 LMIFQIQFLSSLRLLEANITAPFRRMLDRLKWLNLHFDVDFVGFAGCDGE 1955
BLAST of mRNA_Ecto-sp13_S_contig18412.5728.1 vs. uniprot
Match: D7G8U8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8U8_ECTSI) HSP 1 Score: 58.2 bits (139), Expect = 1.120e-6 Identity = 48/139 (34.53%), Postives = 76/139 (54.68%), Query Frame = 1
Query: 58 PGTVSSRSPSATLGLLMIFQIQFLSSLRLLEA-NITAPF-RRMLDQLKWLNLHFDVDFVGFP-GCDGEDSFTGAED--DNGVWVFNTFAVFGFMALLILCHILLLSYIEASWLSKAQL--GMDIFPPRGAGVPALRVPG 453
PG S RSPSA++G LM+ Q+QFL++L L+++ + +A F ++ L+W+NL + P C+ D A+D D GV+ NT V + + L H+ +S +EA WL++ + G + R G PA R G
Sbjct: 1620 PGEASFRSPSASIGFLMMMQLQFLATLSLVQSVHDSASFLSSFVENLRWVNLWLPMPSSLTPDSCEIAD----AQDLIDEGVFFGNTTLVLAILLGIFLIHVGAVSAVEAYWLAQRCMSPGGGLIRHRPNGSPASRTSG 1754
BLAST of mRNA_Ecto-sp13_S_contig18412.5728.1 vs. uniprot
Match: D7G1L9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L9_ECTSI) HSP 1 Score: 57.8 bits (138), Expect = 1.290e-6 Identity = 24/46 (52.17%), Postives = 32/46 (69.57%), Query Frame = 2
Query: 386 RHNSVWIYFPHVELVFLLFAYQGASTSEARMINSGCLPLVILGACA 523
R +SVW+YFPH+EL+FLLFA++GA S+ + G P V ACA
Sbjct: 255 RSSSVWLYFPHIELLFLLFAFEGAMASQLATMRGGGCPWVFYSACA 300
BLAST of mRNA_Ecto-sp13_S_contig18412.5728.1 vs. uniprot
Match: A0A835ZA46_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA46_9STRA) HSP 1 Score: 57.8 bits (138), Expect = 1.480e-6 Identity = 24/40 (60.00%), Postives = 32/40 (80.00%), Query Frame = 2
Query: 386 RHNSVWIYFPHVELVFLLFAYQGASTSEARMINSGCLPLV 505
R +SVW++FPHVEL+FLLFAY+GA ++A M+ S C LV
Sbjct: 1453 RSHSVWLHFPHVELLFLLFAYEGAVAAQASMLESPCASLV 1492
BLAST of mRNA_Ecto-sp13_S_contig18412.5728.1 vs. uniprot
Match: A0A835ZEA4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEA4_9STRA) HSP 1 Score: 57.4 bits (137), Expect = 2.000e-6 Identity = 23/41 (56.10%), Postives = 32/41 (78.05%), Query Frame = 2
Query: 386 RHNSVWIYFPHVELVFLLFAYQGASTSEARMINSGCLPLVI 508
R S+W++FPHVEL+FLLFAY+GA ++A M+ S C LV+
Sbjct: 1433 RSRSLWLHFPHVELLFLLFAYEGAVAAQASMLRSPCASLVV 1473
BLAST of mRNA_Ecto-sp13_S_contig18412.5728.1 vs. uniprot
Match: A0A6H5KSF8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSF8_9PHAE) HSP 1 Score: 57.0 bits (136), Expect = 2.800e-6 Identity = 40/115 (34.78%), Postives = 66/115 (57.39%), Query Frame = 1
Query: 58 PGTVSSRSPSATLGLLMIFQIQFLSSLRLLEA--NITAPFRRMLDQLKWLNLHFDVDFVGFPG-CDGEDSFTGAED--DNGVWVFNTFAVFGFMALLILCHILLLSYIEASWLSK 387
PG S RSPSA++GLLM+ Q+QFL++L L+++ + + ++ L+W+NL + P C+ D A+D D GV+ NT V + + L H+ +S +EA WL++
Sbjct: 1802 PGEASFRSPSASIGLLMMTQLQFLATLSLVQSVHDSASSLSSFVENLRWVNLWLPMPSSLSPNSCEIAD----AQDLIDEGVFFGNTTLVLAILLGIFLIHVGAVSAVEAYWLAQ 1912
BLAST of mRNA_Ecto-sp13_S_contig18412.5728.1 vs. uniprot
Match: A0A835YZS5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZS5_9STRA) HSP 1 Score: 53.9 bits (128), Expect = 3.020e-5 Identity = 23/44 (52.27%), Postives = 31/44 (70.45%), Query Frame = 2
Query: 386 RHNSVWIYFPHVELVFLLFAYQGASTSEARMINSGCLPLVILGA 517
R S+W++FPHVEL+FLL AY+GA ++A +I S C LV A
Sbjct: 853 RSRSLWLHFPHVELLFLLIAYEGAVAAQASVITSDCTALVAAAA 896 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18412.5728.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig18412.5728.1 >prot_Ecto-sp13_S_contig18412.5728.1 ID=prot_Ecto-sp13_S_contig18412.5728.1|Name=mRNA_Ecto-sp13_S_contig18412.5728.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=175bp GTEATSTAQETATDAVSTDPGTVSSRSPSATLGLLMIFQIQFLSSLRLLEback to top mRNA from alignment at Ecto-sp13_S_contig18412:1..3397+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig18412.5728.1 ID=mRNA_Ecto-sp13_S_contig18412.5728.1|Name=mRNA_Ecto-sp13_S_contig18412.5728.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3397bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18412:1..3397+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18412:1..3397+ >mRNA_Ecto-sp13_S_contig18412.5728.1 ID=mRNA_Ecto-sp13_S_contig18412.5728.1|Name=mRNA_Ecto-sp13_S_contig18412.5728.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=525bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18412:1..3397+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |