mRNA_Ecto-sp13_S_contig18341.5696.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18341.5696.1
Unique NamemRNA_Ecto-sp13_S_contig18341.5696.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig18341.5696.1 vs. uniprot
Match: A0A6H5JMS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMS0_9PHAE)

HSP 1 Score: 179 bits (453), Expect = 4.840e-52
Identity = 80/81 (98.77%), Postives = 81/81 (100.00%), Query Frame = 1
Query:    4 KVIEDTDDIGWHWDKDYGMEARGINVHPCLATVTYLSTNGGPTVVLEKKGPMACEDVDEVSGEAAKAWVSRPALGKHICFD 246
            +VIEDTDDIGWHWDKDYGMEARGINVHPCLATVTYLSTNGGPTVVLEKKGPMACEDVDEVSGEAAKAWVSRPALGKHICFD
Sbjct:  137 QVIEDTDDIGWHWDKDYGMEARGINVHPCLATVTYLSTNGGPTVVLEKKGPMACEDVDEVSGEAAKAWVSRPALGKHICFD 217          
BLAST of mRNA_Ecto-sp13_S_contig18341.5696.1 vs. uniprot
Match: D7G1D6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1D6_ECTSI)

HSP 1 Score: 174 bits (441), Expect = 2.510e-50
Identity = 77/81 (95.06%), Postives = 80/81 (98.77%), Query Frame = 1
Query:    4 KVIEDTDDIGWHWDKDYGMEARGINVHPCLATVTYLSTNGGPTVVLEKKGPMACEDVDEVSGEAAKAWVSRPALGKHICFD 246
            +VIED DDIGWHWDKDYGMEARGINVHPCLATVTYLSTNGGPTVVLEKKGPMACED++EVSGEAAKAWVSRPALGKHICFD
Sbjct:  137 QVIEDADDIGWHWDKDYGMEARGINVHPCLATVTYLSTNGGPTVVLEKKGPMACEDMEEVSGEAAKAWVSRPALGKHICFD 217          
BLAST of mRNA_Ecto-sp13_S_contig18341.5696.1 vs. uniprot
Match: A0A835ZJA8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJA8_9STRA)

HSP 1 Score: 111 bits (277), Expect = 3.210e-27
Identity = 50/82 (60.98%), Postives = 59/82 (71.95%), Query Frame = 1
Query:    1 LKVIEDTDDIGWHWDKDYGMEARGINVHPCLATVTYLSTNGGPTVVLEKKGPMACEDVDEVSGEAAKAWVSRPALGKHICFD 246
            ++VI   DDIGWHWDKDY  EA G NVHP LATVTYLS  GGPTVVL K+ P+ C D   + G   +  +SRPA+GKH+CFD
Sbjct:  127 VQVIGGDDDIGWHWDKDYATEASGFNVHPHLATVTYLSDVGGPTVVLNKRDPVTCGD--SLEGTITRCCLSRPAVGKHMCFD 206          
BLAST of mRNA_Ecto-sp13_S_contig18341.5696.1 vs. uniprot
Match: W7T7W1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T7W1_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.490e-22
Identity = 44/82 (53.66%), Postives = 62/82 (75.61%), Query Frame = 1
Query:    1 LKVIEDTDDIGWHWDKDYGMEARGINVHPCLATVTYLSTNGGPTVVLEKKGPMACEDVDEVSGEAAKAWVSRPALGKHICFD 246
            ++V+E+ DDIG H+DKDY +EA G+N++P LATVTYLS+ GGPT+VL   GP+   +  ++SG  + AW+S PA+GKH  FD
Sbjct:   12 VQVLEEEDDIGLHFDKDYALEAHGLNIYPHLATVTYLSSLGGPTLVLPLSGPLHVGE--DLSGALSGAWLSLPAVGKHTVFD 91          
BLAST of mRNA_Ecto-sp13_S_contig18341.5696.1 vs. uniprot
Match: A0A4D9D1L4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1L4_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.880e-22
Identity = 44/82 (53.66%), Postives = 62/82 (75.61%), Query Frame = 1
Query:    1 LKVIEDTDDIGWHWDKDYGMEARGINVHPCLATVTYLSTNGGPTVVLEKKGPMACEDVDEVSGEAAKAWVSRPALGKHICFD 246
            ++V+E+ DDIG H+DKDY +EA G+N++P LATVTYLS+ GGPT+VL   GP+   +  ++SG  + AW+S PA+GKH  FD
Sbjct:  186 VQVLEEEDDIGLHFDKDYALEAHGLNIYPHLATVTYLSSLGGPTLVLPLSGPLHVGE--DLSGALSGAWLSLPAVGKHTVFD 265          
BLAST of mRNA_Ecto-sp13_S_contig18341.5696.1 vs. uniprot
Match: K8YX42_NANGC (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YX42_NANGC)

HSP 1 Score: 98.2 bits (243), Expect = 2.540e-22
Identity = 44/82 (53.66%), Postives = 62/82 (75.61%), Query Frame = 1
Query:    1 LKVIEDTDDIGWHWDKDYGMEARGINVHPCLATVTYLSTNGGPTVVLEKKGPMACEDVDEVSGEAAKAWVSRPALGKHICFD 246
            ++V+E+ DDIG H+DKDY +EA G+N++P LATVTYLS+ GGPT+VL   GP+   +  ++SG  + AW+S PA+GKH  FD
Sbjct:  164 VQVLEEEDDIGLHFDKDYALEAHGLNIYPHLATVTYLSSLGGPTLVLPLSGPLHVGE--DLSGALSGAWLSLPAVGKHTVFD 243          
BLAST of mRNA_Ecto-sp13_S_contig18341.5696.1 vs. uniprot
Match: K8YUU4_NANGC (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YUU4_NANGC)

HSP 1 Score: 98.2 bits (243), Expect = 3.940e-22
Identity = 44/82 (53.66%), Postives = 62/82 (75.61%), Query Frame = 1
Query:    1 LKVIEDTDDIGWHWDKDYGMEARGINVHPCLATVTYLSTNGGPTVVLEKKGPMACEDVDEVSGEAAKAWVSRPALGKHICFD 246
            ++V+E+ DDIG H+DKDY +EA G+N++P LATVTYLS+ GGPT+VL   GP+   +  ++SG  + AW+S PA+GKH  FD
Sbjct:  186 VQVLEEEDDIGLHFDKDYALEAHGLNIYPHLATVTYLSSLGGPTLVLPLSGPLHVGE--DLSGALSGAWLSLPAVGKHTVFD 265          
BLAST of mRNA_Ecto-sp13_S_contig18341.5696.1 vs. uniprot
Match: A0A8K1C7D8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C7D8_PYTOL)

HSP 1 Score: 95.5 bits (236), Expect = 2.590e-21
Identity = 43/83 (51.81%), Postives = 58/83 (69.88%), Query Frame = 1
Query:    1 LKVIEDTDDIGWHWDKDYGMEAR-GINVHPCLATVTYLSTNGGPTVVLEKKGPMACEDVDEVSGEAAKAWVSRPALGKHICFD 246
            L   E  DD+ +HWD+DYG+E    +N+HP + TVTYLST GGPT+VL+K  P+     D  +G+ AK ++SRPA+GKHI FD
Sbjct:  156 LDAGETNDDVSFHWDRDYGLEDEYRVNLHPHIGTVTYLSTIGGPTIVLDKVSPVQTGSDDCGAGDIAKGYLSRPAMGKHISFD 238          
BLAST of mRNA_Ecto-sp13_S_contig18341.5696.1 vs. uniprot
Match: A0A1Z5JMW3_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JMW3_FISSO)

HSP 1 Score: 89.0 bits (219), Expect = 4.930e-19
Identity = 42/77 (54.55%), Postives = 54/77 (70.13%), Query Frame = 1
Query:   22 DDIGWHWDKDYGMEARGIN--VHPCLATVTYLSTNGGPTVVLEKKGPMACEDVDEVSGEAAKAWVSRPALGKHICFD 246
            D++G H+D DYG+E +  N  VHP LATVTYLS  G PTVV  KK P   +D+D + GE   AW+S+P++GKHI FD
Sbjct:  153 DEVGMHFDADYGLEEQAPNLLVHPRLATVTYLSDFGAPTVVFNKKSPPP-KDIDSLGGEIRTAWLSQPSVGKHIAFD 228          
BLAST of mRNA_Ecto-sp13_S_contig18341.5696.1 vs. uniprot
Match: A0A7S0DNN1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DNN1_9EUKA)

HSP 1 Score: 88.6 bits (218), Expect = 5.150e-19
Identity = 41/78 (52.56%), Postives = 52/78 (66.67%), Query Frame = 1
Query:   16 DTDD-IGWHWDKDYGMEARGINVHPCLATVTYLSTNGGPTVVLEKKGPMACEDVDEVSGEAAKAWVSRPALGKHICFD 246
            D DD +GWH+DKDY +EA G+NVHP +ATVTYLS+ G PTV LEK           ++G  +K +VS P  GKH+ FD
Sbjct:  109 DLDDAVGWHFDKDYALEANGVNVHPHIATVTYLSSGGAPTVFLEKCVSSPIVGSMALTGSVSKGYVSWPVTGKHVSFD 186          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18341.5696.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JMS0_9PHAE4.840e-5298.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1D6_ECTSI2.510e-5095.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZJA8_9STRA3.210e-2760.98Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7T7W1_9STRA1.490e-2253.66Uncharacterized protein (Fragment) n=1 Tax=Nannoch... [more]
A0A4D9D1L4_9STRA1.880e-2253.66Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
K8YX42_NANGC2.540e-2253.66Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
K8YUU4_NANGC3.940e-2253.66Uncharacterized protein n=3 Tax=Monodopsidaceae Ta... [more]
A0A8K1C7D8_PYTOL2.590e-2151.81Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A1Z5JMW3_FISSO4.930e-1954.55Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A7S0DNN1_9EUKA5.150e-1952.56Hypothetical protein (Fragment) n=1 Tax=Amorphochl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18341contigEcto-sp13_S_contig18341:2..544 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score173.7
Seed ortholog evalue3.5e-41
Seed eggNOG ortholog2880.D7G1D6
Model size246
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs2BVEA@1,2S26B@2759
Cds size246
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462944.364532-CDS-Ecto-sp13_S_contig18341:1..971681462944.364532-CDS-Ecto-sp13_S_contig18341:1..97Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18341 2..97 -
1681462944.3762634-CDS-Ecto-sp13_S_contig18341:394..5441681462944.3762634-CDS-Ecto-sp13_S_contig18341:394..544Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18341 395..544 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18341.5696.1prot_Ecto-sp13_S_contig18341.5696.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18341 2..544 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18341.5696.1

>prot_Ecto-sp13_S_contig18341.5696.1 ID=prot_Ecto-sp13_S_contig18341.5696.1|Name=mRNA_Ecto-sp13_S_contig18341.5696.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=82bp
LKVIEDTDDIGWHWDKDYGMEARGINVHPCLATVTYLSTNGGPTVVLEKK
GPMACEDVDEVSGEAAKAWVSRPALGKHICFD
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mRNA from alignment at Ecto-sp13_S_contig18341:2..544-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18341.5696.1 ID=mRNA_Ecto-sp13_S_contig18341.5696.1|Name=mRNA_Ecto-sp13_S_contig18341.5696.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=543bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18341:2..544- (Ectocarpus species13 EcNAP12_S_4_19m)
CTCAAGGTTATCGAAGACACGGATGACATCGGGTGGCACTGGGACAAGGA TTACGGCATGGAGGCTCGTGGGATAAACGTGCACCCGTGTCTGGCAACGG TCACCTACCTTTCAACGAACGGAGGGCCGACAGTAGTCTTGGAGAAGAAG GTGACTTCTTGCTTGTTGTTGTTGTTGTTTCTACTGTGGTAGTGGTCGAT GTCGTTAGTGGTGGTGGTTGTGTTTTGTTTTTTTGTCCCTCTTGCTGTTT TGTCGTAGTGATGTTGTCGATGTTAGTTGTTGACGTTGTTGTTGACGTTG TAGCTAGTGTTCTTGGCTTCCACAACCCGCCCGAGTATAAGACCAGGCCC GAAATAACACTACGTATGAGAACCTTCACCAGCTCAACCAACGTGTACTG CGTCGCTGCTCGTGTCACCCCCCTCTCCCGCTTCGGTACTTCCACAGGGG CCAATGGCGTGTGAAGATGTGGACGAGGTCTCAGGGGAGGCCGCAAAGGC GTGGGTGAGTCGCCCGGCGCTGGGTAAGCACATCTGCTTCGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18341:2..544-

>mRNA_Ecto-sp13_S_contig18341.5696.1 ID=mRNA_Ecto-sp13_S_contig18341.5696.1|Name=mRNA_Ecto-sp13_S_contig18341.5696.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=246bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18341:2..544- (Ectocarpus species13 EcNAP12_S_4_19m)
CTCAAGGTTATCGAAGACACGGATGACATCGGGTGGCACTGGGACAAGGA
TTACGGCATGGAGGCTCGTGGGATAAACGTGCACCCGTGTCTGGCAACGG
TCACCTACCTTTCAACGAACGGAGGGCCGACAGTAGTCTTGGAGAAGAAG
GGGCCAATGGCGTGTGAAGATGTGGACGAGGTCTCAGGGGAGGCCGCAAA
GGCGTGGGTGAGTCGCCCGGCGCTGGGTAAGCACATCTGCTTCGAC
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