mRNA_Ecto-sp13_S_contig18324.5689.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18324.5689.1
Unique NamemRNA_Ecto-sp13_S_contig18324.5689.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18324.5689.1 vs. uniprot
Match: A0A6H5KD35_9PHAE (CBM1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD35_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 1.740e-32
Identity = 52/70 (74.29%), Postives = 59/70 (84.29%), Query Frame = 3 
Query:    3 YECEEMAECYSE---------CRPKEDRCSEGWGQCGGLHWEGPECCWPGAECIERNEWYHQCVPEGAVN 185
            YECEEMA+CYS+         CRP+ DRCSEGWGQCGGLHWEGPECCWPGAEC+ERNE +HQCVPEGA++
Sbjct:  411 YECEEMADCYSDVQRRQLVESCRPRGDRCSEGWGQCGGLHWEGPECCWPGAECVERNEHFHQCVPEGAIH 480
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BLAST of mRNA_Ecto-sp13_S_contig18324.5689.1 vs. uniprot
Match: D8LD67_ECTSI (EsV-1-166 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD67_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 1.530e-8
Identity = 27/53 (50.94%), Postives = 32/53 (60.38%), Query Frame = 3 
Query:    3 YECEEMAECYSECRPKEDRCSEGWGQCGGLHWEGPECCWPGAECIERNEWYHQ 161
            YECE+MA+CYSECRP+ DRCSEGWG                   +ERNE +HQ
Sbjct:  455 YECEKMADCYSECRPRGDRCSEGWGXXXXXXXXXXXXXXXXXXXVERNEQFHQ 507
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BLAST of mRNA_Ecto-sp13_S_contig18324.5689.1 vs. uniprot
Match: D8LMF4_ECTSI (EsV-1-166 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMF4_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 2.100e-8
Identity = 30/61 (49.18%), Postives = 31/61 (50.82%), Query Frame = 3 
Query:    3 YECEEMAECYSECRPKEDRCSEGWGQCGGLHWEGPECCWPGAECIERNEWYHQCVPEGAVN 185
            YECEEMAECYSECRPK+DRCSEGWG                              PEGAVN
Sbjct:  480 YECEEMAECYSECRPKDDRCSEGWGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPEGAVN 540
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BLAST of mRNA_Ecto-sp13_S_contig18324.5689.1 vs. uniprot
Match: A0A1D2VQW1_9ASCO (Cellulase n=1 Tax=Ascoidea rubescens DSM 1968 TaxID=1344418 RepID=A0A1D2VQW1_9ASCO)

HSP 1 Score: 57.4 bits (137), Expect = 2.520e-7
Identity = 20/39 (51.28%), Postives = 27/39 (69.23%), Query Frame = 3 
Query:   54 DRCSEGWGQCGGLHWEGPECCWPGAECIERNEWYHQCVP 170
            ++C+  +GQCGGL+W GP CC  G  C  +N +YHQC P
Sbjct:   27 EQCASLYGQCGGLNWNGPNCCTGGYLCSSQNPYYHQCTP 65
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BLAST of mRNA_Ecto-sp13_S_contig18324.5689.1 vs. uniprot
Match: C1MIU1_MICPC (Carbohydrate-binding module family 1 protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MIU1_MICPC)

HSP 1 Score: 55.8 bits (133), Expect = 9.160e-7
Identity = 27/68 (39.71%), Postives = 36/68 (52.94%), Query Frame = 3 
Query:   30 YSECRPKEDR-----------------CSEGWGQCGGLHWEGPECCW-PGAECIERNEWYHQCVPEGA 179
            YS+C P +D                  C+E +GQCGG    G  CC   G +C+E++EWY QC+PEGA
Sbjct:  731 YSQCLPTDDDARVARANGGGSGGVTPPCAETYGQCGGREHAGATCCANDGDDCVEQDEWYSQCLPEGA 798
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BLAST of mRNA_Ecto-sp13_S_contig18324.5689.1 vs. uniprot
Match: A0A1Y3NMR3_PIRSE (Carbohydrate-binding module family 1 protein n=1 Tax=Piromyces sp. (strain E2) TaxID=73868 RepID=A0A1Y3NMR3_PIRSE)

HSP 1 Score: 53.1 bits (126), Expect = 7.260e-6
Identity = 19/36 (52.78%), Postives = 25/36 (69.44%), Query Frame = 3 
Query:   60 CSEGWGQCGGLHWEGPECCWPGAECIERNEWYHQCV 167
            C++ WGQCGG+ + GP CC PG  C   NE+Y QC+
Sbjct:  317 CADKWGQCGGIGFNGPNCCKPGLTCNIVNEYYSQCL 352
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BLAST of mRNA_Ecto-sp13_S_contig18324.5689.1 vs. uniprot
Match: D8LM94_ECTSI (Elicitor-inducible LRR receptor-like protein EILP (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM94_ECTSI)

HSP 1 Score: 49.3 bits (116), Expect = 2.870e-5
Identity = 19/25 (76.00%), Postives = 22/25 (88.00%), Query Frame = 3 
Query:    3 YECEEMAECYSECRPKEDRCSEGWG 77
            Y+C EMA+CYSECRP+ DRCSE WG
Sbjct:   51 YDCVEMADCYSECRPRGDRCSENWG 75
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BLAST of mRNA_Ecto-sp13_S_contig18324.5689.1 vs. uniprot
Match: D7FP25_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP25_ECTSI)

HSP 1 Score: 50.4 bits (119), Expect = 6.610e-5
Identity = 20/25 (80.00%), Postives = 22/25 (88.00%), Query Frame = 3 
Query:    3 YECEEMAECYSECRPKEDRCSEGWG 77
            YECEEMA+CYSECRP+ D CSE WG
Sbjct:  344 YECEEMADCYSECRPRGDGCSESWG 368
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18324.5689.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KD35_9PHAE1.740e-3274.29CBM1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LD67_ECTSI1.530e-850.94EsV-1-166 n=2 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LMF4_ECTSI2.100e-849.18EsV-1-166 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM... [more]
A0A1D2VQW1_9ASCO2.520e-751.28Cellulase n=1 Tax=Ascoidea rubescens DSM 1968 TaxI... [more]
C1MIU1_MICPC9.160e-739.71Carbohydrate-binding module family 1 protein n=1 T... [more]
A0A1Y3NMR3_PIRSE7.260e-652.78Carbohydrate-binding module family 1 protein n=1 T... [more]
D8LM94_ECTSI2.870e-576.00Elicitor-inducible LRR receptor-like protein EILP ... [more]
D7FP25_ECTSI6.610e-580.00EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18324contigEcto-sp13_S_contig18324:2339..2853 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeFungi
Stop1
Start1
Seed ortholog score60.1
Seed ortholog evalue3.9e-07
Seed eggNOG ortholog38033.XP_001226029.1
Preferred namecbhC
Model size327
KEGG rclassRC00799
KEGG koko:K19668
KEGG ReactionR02886,R11308
KEGG Pathwayko00500,ko01100,ko02020,map00500,map01100,map02020
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000272,GO:0003674,GO:0003824,GO:0004553,GO:0005975,GO:0005976,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009251,GO:0016052,GO:0016162,GO:0016787,GO:0016798,GO:0043170,GO:0044042,GO:0044238,GO:0071704,GO:1901575
Exons2
EggNOG free text desc.Belongs to the glycosyl hydrolase family 6
EggNOG OGs21499@147550,2QWHE@2759,39RNX@33154,3HADI@35718,3NXS8@4751,3QMEP@4890,3UAEX@5139,COG5297@1
EC3.2.1.91
Cds size171
COG Functional cat.G
CAZyGH6
Best tax levelChaetomiaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462943.9147928-UTR-Ecto-sp13_S_contig18324:2338..24771681462943.9147928-UTR-Ecto-sp13_S_contig18324:2338..2477Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18324 2339..2477 -
1681462943.944162-UTR-Ecto-sp13_S_contig18324:2836..28531681462943.944162-UTR-Ecto-sp13_S_contig18324:2836..2853Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18324 2837..2853 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462943.9275315-CDS-Ecto-sp13_S_contig18324:2477..26271681462943.9275315-CDS-Ecto-sp13_S_contig18324:2477..2627Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18324 2478..2627 -
1681462943.9363065-CDS-Ecto-sp13_S_contig18324:2815..28361681462943.9363065-CDS-Ecto-sp13_S_contig18324:2815..2836Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18324 2816..2836 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18324.5689.1prot_Ecto-sp13_S_contig18324.5689.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18324 2478..2836 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18324.5689.1

>prot_Ecto-sp13_S_contig18324.5689.1 ID=prot_Ecto-sp13_S_contig18324.5689.1|Name=mRNA_Ecto-sp13_S_contig18324.5689.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=57bp
MAECYSECRPKEDRCSEGWGQCGGLHWEGPECCWPGAECIERNEWYHQCV
PEGAVN*
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mRNA from alignment at Ecto-sp13_S_contig18324:2339..2853-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18324.5689.1 ID=mRNA_Ecto-sp13_S_contig18324.5689.1|Name=mRNA_Ecto-sp13_S_contig18324.5689.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=515bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18324:2339..2853- (Ectocarpus species13 EcNAP12_S_4_19m)
GCTACGAGTGTGAGGAGATGGCGGAGTGCTACTCCGAGGTGAGATGACAA
TCAATTTCGATTGCTCGACTGCTGCTGTCTGCCGTCCACCGACCGAGCGA
AGTTACGCTGCTGCCTTGTTTTTCCTTGTGCCTCCGTCACAACCACCCCG
CTCCTCTTTTCTTGACTCCTGACTCTTTCTTTCTTGTGTTCTGCCCCTCC
TCCGTTGCTGCTTGCTTTCATTCCAGTGCCGGCCCAAGGAAGACCGGTGC
TCGGAGGGGTGGGGGCAGTGCGGAGGGCTCCACTGGGAGGGCCCCGAGTG
CTGCTGGCCCGGCGCCGAGTGCATCGAGCGCAACGAGTGGTACCACCAGT
GCGTCCCCGAGGGAGCCGTCAACTGATCTGATGGATGAGCCCTACATCAA
CTGACGATGGGCCATCAACTGACGATTAGTCACCTGCTGATTTGCTTGAT
GGTTTTTCGTGTGAGCTGGAAAGCGGGTGGGGCGGGCGTTGAAGTTCATA
TTTTTTGTCGTTGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18324:2339..2853-

>mRNA_Ecto-sp13_S_contig18324.5689.1 ID=mRNA_Ecto-sp13_S_contig18324.5689.1|Name=mRNA_Ecto-sp13_S_contig18324.5689.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=171bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18324:2339..2853- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGGAGTGCTACTCCGAGTGCCGGCCCAAGGAAGACCGGTGCTCGGA
GGGGTGGGGGCAGTGCGGAGGGCTCCACTGGGAGGGCCCCGAGTGCTGCT
GGCCCGGCGCCGAGTGCATCGAGCGCAACGAGTGGTACCACCAGTGCGTC
CCCGAGGGAGCCGTCAACTGA
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