mRNA_Ecto-sp13_S_contig18244.5652.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18244.5652.1
Unique NamemRNA_Ecto-sp13_S_contig18244.5652.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18244.5652.1 vs. uniprot
Match: D8LTQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTQ0_ECTSI)

HSP 1 Score: 219 bits (557), Expect = 1.140e-68
Identity = 123/174 (70.69%), Postives = 139/174 (79.89%), Query Frame = 1 
Query:    1 MRIDPRYQGSAPGHEAATVRDDSYLDTEQEHHHDESTVSHDESSAIIMLGSFVAGALVGAIICVRVFMFAPIVVVLLCGAGAAVFTKSYSKAGQISRGVGKWTSDVFLALFKVVREFNYEYQLTDKVKITARSDGEGESRGAEARHL*RCQDQGTLPVGASRQADRPSRSASHP 522
            MR  PR+Q SAPGHEAA VR+DSYLDTEQEHHHDEST++HDESSAII+LGSFVAGALVGAI+CVRVFMFAP VVVLLCGAGAAVFTKS SKAGQISR VGKWT DVFLALF+VVREFNY+YQLT KV+ITA+ +  G+ + AE + L  C    T       Q D+ +  A  P
Sbjct:    1 MRSYPRHQVSAPGHEAAAVRNDSYLDTEQEHHHDESTLAHDESSAIIVLGSFVAGALVGAILCVRVFMFAPTVVVLLCGAGAAVFTKSDSKAGQISREVGKWTCDVFLALFRVVREFNYKYQLTVKVRITAQ-EAAGKVK-AEVQRLGICDGVKTRARSLWEQVDKRTAPAGQP 172
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BLAST of mRNA_Ecto-sp13_S_contig18244.5652.1 vs. uniprot
Match: A0A6H5JUV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUV7_9PHAE)

HSP 1 Score: 213 bits (542), Expect = 4.510e-67
Identity = 112/141 (79.43%), Postives = 122/141 (86.52%), Query Frame = 1 
Query:    1 MRIDPRYQGSAPGHEAATVRDDSYLDTEQEHHHDESTVSHDESSAIIMLGSFVAGALVGAIICVRVFMFAPIVVVLLCGAGAAVFTKSYSK----------AGQISRGVGKWTSDVFLALFKVVREFNYEYQLTDKVKITA 393
            M  DPR++GSAPGHEA  VR+D YLDTEQEHHHDEST++HDESSAIIMLGSFVAGAL+GAIIC RVFMFAP+VVVLLCGAGAAVFT S S+          AGQISRGVGKWTSDVFLALF+VVREFNY+YQL DKVKITA
Sbjct:    1 MHSDPRHRGSAPGHEAVAVRNDPYLDTEQEHHHDESTLAHDESSAIIMLGSFVAGALMGAIICARVFMFAPMVVVLLCGAGAAVFTNSDSEVGKFVVRLRWAGQISRGVGKWTSDVFLALFRVVREFNYKYQLADKVKITA 141
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BLAST of mRNA_Ecto-sp13_S_contig18244.5652.1 vs. uniprot
Match: D8LTP9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTP9_ECTSI)

HSP 1 Score: 153 bits (387), Expect = 1.040e-42
Identity = 93/151 (61.59%), Postives = 103/151 (68.21%), Query Frame = 1 
Query:    1 MRIDPRYQGSAPGHEAATVRDDSYLD---------TEQEHHHDESTVSHDESSAIIMLGSFVAGALVGAIICVRVFMFAPIVVVLLCGA------------GAAVFTKSYSKAGQISRGVGKWTSDVFLALFKVVREFNYEYQLTDKVKIT 390
            M+ DPR+QGSAPG EAA  RDDS+           TEQ+HH D S + HDESSAI MLGSFVAGA VG +ICVR+FMFAPIV +LLCGA             AAV TKS SKAG ISR  G + SDV LALF+ VREFN  YQLTDKVK T
Sbjct:    1 MQSDPRHQGSAPGSEAAANRDDSHRHAKSFEVDNGTEQQHHRDGSILVHDESSAITMLGSFVAGASVGTMICVRLFMFAPIVFLLLCGACVAVMVVXXXXXXAAVVTKSDSKAGTISRRAGNFISDVLLALFRGVREFNRTYQLTDKVKAT 151
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BLAST of mRNA_Ecto-sp13_S_contig18244.5652.1 vs. uniprot
Match: A0A6H5JZU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZU5_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 1.430e-25
Identity = 66/117 (56.41%), Postives = 78/117 (66.67%), Query Frame = 1 
Query:    1 MRIDPRYQGSAPGHEAATVRDDSYLD---------TEQEHHHDESTVSHDESSAIIMLGSFVAGALVGAIICVRVFMFAPIVVVLLCGA------------GAAVFTKSYSKAGQIS 288
            M+ +PR+QGSAPG EAA  RDDS            TEQ+H+ D S ++HDESSAI MLGSFVAGA VGA+ICVR+F+ APIV +LLCGA            GAAV TKS+SK   IS
Sbjct:    1 MQSNPRHQGSAPGSEAAANRDDSCRHAKSFEVDNGTEQQHNRDRSILAHDESSAITMLGSFVAGASVGAMICVRLFVLAPIVFLLLCGACVAVTVVLXXXAGAAVVTKSHSKVESIS 117
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BLAST of mRNA_Ecto-sp13_S_contig18244.5652.1 vs. uniprot
Match: D8LTP8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTP8_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 8.800e-24
Identity = 57/107 (53.27%), Postives = 77/107 (71.96%), Query Frame = 1 
Query:   76 DTEQEHHHDESTVSHDESSAIIMLGSFVAGALVGAIICVRVFMFAPIVVVLLCGAGAAVFTKSYSKAGQISRGVGKWTSDVFLALFKVVREFNYEYQLTDKVKITAR 396
            D EQ H   +  ++HDE+S II+ GSF+AGALVG +IC      AP  VVLL GAGAA  TKS SK G+ SR VGK +SD+ LA+F++ RE+N++++LTDK K+ A+
Sbjct:   36 DNEQPH---QEVIAHDEASGIIVFGSFIAGALVGVVIC------APAFVVLLFGAGAAALTKSDSKVGKFSRKVGKVSSDILLAVFRLAREYNHKHKLTDKAKVGAK 133
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BLAST of mRNA_Ecto-sp13_S_contig18244.5652.1 vs. uniprot
Match: A0A6H5JV13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV13_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 1.930e-5
Identity = 25/43 (58.14%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:  262 SYSKAGQISRGVGKWTSDVFLALFKVVREFNYEYQLTDKVKIT 390
            ++ K G ISR  G +TSDV LAL +VVRE N   QL+DKVK+T
Sbjct:   17 TFMKVGTISRRAGNFTSDVLLALLRVVREINRTCQLSDKVKVT 59
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18244.5652.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LTQ0_ECTSI1.140e-6870.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JUV7_9PHAE4.510e-6779.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTP9_ECTSI1.040e-4261.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JZU5_9PHAE1.430e-2556.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTP8_ECTSI8.800e-2453.27Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JV13_9PHAE1.930e-558.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18244contigEcto-sp13_S_contig18244:773..3211 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size670
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-28_003260.1
Cds size444
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462940.4384108-CDS-Ecto-sp13_S_contig18244:772..10451681462940.4384108-CDS-Ecto-sp13_S_contig18244:772..1045Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18244 773..1045 +
1681462940.4500813-CDS-Ecto-sp13_S_contig18244:1849..19541681462940.4500813-CDS-Ecto-sp13_S_contig18244:1849..1954Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18244 1850..1954 +
1681462940.4652083-CDS-Ecto-sp13_S_contig18244:2345..24111681462940.4652083-CDS-Ecto-sp13_S_contig18244:2345..2411Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18244 2346..2411 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462940.4747245-UTR-Ecto-sp13_S_contig18244:2411..24571681462940.4747245-UTR-Ecto-sp13_S_contig18244:2411..2457Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18244 2412..2457 +
1681462940.4829094-UTR-Ecto-sp13_S_contig18244:3031..32111681462940.4829094-UTR-Ecto-sp13_S_contig18244:3031..3211Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18244 3032..3211 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18244.5652.1prot_Ecto-sp13_S_contig18244.5652.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18244 773..2411 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18244.5652.1

>prot_Ecto-sp13_S_contig18244.5652.1 ID=prot_Ecto-sp13_S_contig18244.5652.1|Name=mRNA_Ecto-sp13_S_contig18244.5652.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=148bp
MRIDPRYQGSAPGHEAATVRDDSYLDTEQEHHHDESTVSHDESSAIIMLG
SFVAGALVGAIICVRVFMFAPIVVVLLCGAGAAVFTKSYSKAGQISRGVG
KWTSDVFLALFKVVREFNYEYQLTDKVKITARSDGEGESRGAEARHL*
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mRNA from alignment at Ecto-sp13_S_contig18244:773..3211+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18244.5652.1 ID=mRNA_Ecto-sp13_S_contig18244.5652.1|Name=mRNA_Ecto-sp13_S_contig18244.5652.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2439bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18244:773..3211+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGCATTGACCCACGATACCAAGGCAGCGCTCCCGGTCATGAGGCAGC
CACAGTTCGGGACGATTCATACCTCGATACCGAGCAAGAACATCATCATG
ATGAATCTACTGTCTCACATGATGAGTCCAGCGCTATCATCATGCTCGGC
TCCTTCGTGGCGGGTGCACTGGTGGGGGCAATAATCTGCGTACGGGTGTT
CATGTTCGCGCCTATTGTGGTCGTGCTTCTCTGCGGGGCCGGGGCGGCGG
TGTTCACGAAGTCATACAGCAAGGTGGGGAAGTCCGTAGTGAGGCTACGA
TGGGTAAATTGCATTCCGCACCTTTCTACCACAAATGTATAATAGACTCC
ATTTTAGGTCATCGGTAACTGAGGGGGTATCCTTTGAACGTGGGCTGACC
TACTGCTGTTGACACACATGAAATCTAGACTAAAATGCGAGGGAGTTTTG
GGCTCCTACATATATACATAGATTCACGCAGACGGGAAAGTCCACTTAAT
GCGGTGCATAGCACATCAATCGAGGTGGGAGAGTGCGTGAGTAGTCGCGA
TCATTGGACTGACAAAGGTCACCCGCCTGCAGTACAGATTATTCTAATAG
CGAATCAACCCTCGCGCAAACCGGAGGCCGCACGAACAAATATATCGTCT
TTCGTATACTTGCTCGGCAAAAGCAGCGGAAGGTGGGTAAACTATGCAAG
ACTCGGGGTAACCCTCAAGACGTAGGGTAACCCACACGGGGTAACCCTCA
GGGTGACGGCCCTACCTCGCCACCAGCACAAACGCGATATTCAGCATACG
GAAAGGTTTAGACGACCGAATGCTATTGTGGTGGCTGTCTCAGGTGGCCG
CATGCCCAACGTTTTCTTCGCCATTGCGGGGGGGAGACATTCAACACGTT
GAGAGCCGCCGGATTCTCCTTCATCTGGATACGAGCTCGCCTTTCGACTT
GTCAAACTCCCTTTCTTGAATCTACAACTGAAGACTCTCGCTTTCTTGTA
CACGTACGTCAAGAAGAGACGATGTATCTGCCTTTTTCATAACCCTTGTT
TTCTTCTAAACCATCTGCCCGTCGCAGGCCGGCCAGATTTCCCGTGGAGT
GGGCAAGTGGACCTCCGACGTTTTCCTGGCCTTGTTTAAGGTCGTTCGAG
AGTTCAACTACGAGTACCAATTGACGGACAAGGTAATCACCATCACTTCC
CCGATACAACGTCTGTCGTGCTCCCGTCGCTTCGGGAGACTTGTAGAGAG
ATACGCAGGTAATGTTTGCGGTACAACATCTGGACACGAAAAAACGCATT
ATTATTGATCATTGCCGTGTCATCCGCGCTCTCTAAGTATTCCATGGTCC
AATCATTAGCGAACTTCAGGCTAGACTTTCGACACGATTGGTCGCCTCGG
GCTTGCCCGAGCTGGCCCTTTTCGGACAGTCTCTCCGGTTGTGGTATTTT
GGGTTCGGTCTCGTGGGGGAATTTTGGGTTCTACCCCGAGCCTGCAATTT
GATACCGCCAAAAGAGTATTATAGCTTATTTTGCCGGTAACCTTCGGGGC
CTTTTTTTTCTTTTCCTTGCCAGGTTAAGATTACCGCGCGAAGCGACGGG
GAAGGTGAAAGCCGAGGTGCAGAGGCTCGGCATCTGTGACGGTGTCAAGA
CCAGGGCACGCTCCCTGTGGGAGCAAGTCGACAAGGTTAGACTCTAGCCA
CGTCAATTGATACTAGATATTAATAGTGGTGTTAAATAGCATTGATTACT
GCTGAAGAGGCGGAATGAGAGAAATTTGACGGTGCCGTTCTTCTCCTGCC
GATACGAGTGACCGCCATGTCTTCGACACATGAAAACTTTGAACATTCAC
GGCAAGACTCCGTAGACCCATAGGTGAACCTAAAAAAACGAGCTGAGCTC
GACCGCGATGGGTCGAGGTGCCTTGCTCCCTCTACCGTACACGGGAAAAT
TTACGCCTGCGACGCTATCGCTGCAGTCGGAAAATATGGAATGCACAACC
GCCCCCCCCCTGCCCCTGTTTTTTCAGGTCTTCTGGCCCTCTTCCGACCC
TTTCGCTACCGCCCGACCTGCTTCATTCTTCCTGCTTCAAGAGCTCCAGC
AGCTGATGGCAATGGGTATCCACAAGCGCGAACCAAAGTGAAATTCCACG
TCGTACATGCTCCCCTTTTTCAGGTATTCCCTATCTCATCCGTCGCTCCG
TCGGCGAAATTTTTTTCTCATATGTTCCGTTTGTCGCAATCACCTCATCA
CGGTCGCAGCGGACCGCCCCAGCCGGTCAGCCTCCCATCCATGCTGCACA
AGGGCAAGACACGATGGGGCTGATGATGGAAGAACGTCAACTTGGTTTCG
ATGACGCCGTGGATGCGCTCGAATCAAGGTCTTGTTCCTCATCGTCCTCG
GAAGACGAGAAGACTGTTCCGCTAAAGTTGGTCGACGCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18244:773..3211+

>mRNA_Ecto-sp13_S_contig18244.5652.1 ID=mRNA_Ecto-sp13_S_contig18244.5652.1|Name=mRNA_Ecto-sp13_S_contig18244.5652.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=444bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18244:773..3211+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGCATTGACCCACGATACCAAGGCAGCGCTCCCGGTCATGAGGCAGC
CACAGTTCGGGACGATTCATACCTCGATACCGAGCAAGAACATCATCATG
ATGAATCTACTGTCTCACATGATGAGTCCAGCGCTATCATCATGCTCGGC
TCCTTCGTGGCGGGTGCACTGGTGGGGGCAATAATCTGCGTACGGGTGTT
CATGTTCGCGCCTATTGTGGTCGTGCTTCTCTGCGGGGCCGGGGCGGCGG
TGTTCACGAAGTCATACAGCAAGGCCGGCCAGATTTCCCGTGGAGTGGGC
AAGTGGACCTCCGACGTTTTCCTGGCCTTGTTTAAGGTCGTTCGAGAGTT
CAACTACGAGTACCAATTGACGGACAAGGTTAAGATTACCGCGCGAAGCG
ACGGGGAAGGTGAAAGCCGAGGTGCAGAGGCTCGGCATCTGTGA
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