mRNA_Ecto-sp13_S_contig18235.5650.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig18235.5650.1 vs. uniprot
Match: D8LCL4_ECTSI (ATP-dependent DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCL4_ECTSI) HSP 1 Score: 101 bits (251), Expect = 4.340e-21 Identity = 45/74 (60.81%), Postives = 61/74 (82.43%), Query Frame = 3
Query: 429 NFILDKMHGDSHHQLSTDKLVTDDSNMPNVVSVEYLHEVNVPGTPPHNLHIKFGSLIFYVGNVNFDSGLVNGRK 650
+FIL KM G+ H QLS+DK+V DD NMP+V SVEYL+ +N PGTPPH L++K G+LIF++ N++FD GLVNG++
Sbjct: 572 DFILRKMPGNVHEQLSSDKIVKDDENMPDVASVEYLNIINAPGTPPHKLNLKGGALIFFIRNIDFDCGLVNGKR 645
BLAST of mRNA_Ecto-sp13_S_contig18235.5650.1 vs. uniprot
Match: D8LEP4_ECTSI (ATP-dependent DNA helicase (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEP4_ECTSI) HSP 1 Score: 92.8 bits (229), Expect = 7.440e-20 Identity = 53/140 (37.86%), Postives = 74/140 (52.86%), Query Frame = 1
Query: 7 GGTCVLMSGDWRQVAPVLKFGTPSEIVEHAFLSSHLWKHVKSFCLTTSMRDKEDLPNAQTVLAIGEGAIQPIELEDGTAVIPLSHTMTNTDGTQQSCTIEGITDLTHLVDRIYPDLLSADHNCYSDRGILAPTNENIENI 426
GG VL+SGD RQ+ PV+ +G +E V+ + +SS LW +V LT S RD+ED P A V IG GA +DG +PL + IE L++ +YPD+L AD + R IL+ TN+ I+ I
Sbjct: 25 GGKTVLLSGDMRQIGPVVVYGGQAERVDASIISSPLWPYVHRMRLTISQRDREDAPYAAFVRNIGIGAQPHTTTDDGIDAVPLVYIHDIPAMPPDPFVIENTESFQELINFVYPDILHADPTTFKSRAILSSTNDTIDTI 164
BLAST of mRNA_Ecto-sp13_S_contig18235.5650.1 vs. uniprot
Match: UPI001E691748 (uncharacterized protein LOC123890262 n=5 Tax=Trifolium pratense TaxID=57577 RepID=UPI001E691748) HSP 1 Score: 83.6 bits (205), Expect = 5.820e-15 Identity = 50/153 (32.68%), Postives = 80/153 (52.29%), Query Frame = 1
Query: 1 PFGGTCVLMSGDWRQVAPVLKFGTPSEIVEHAFLSSHLWKHVKSFCLTTSMRDKEDLPN---------AQTVLAIGEGAIQPIELEDGTAVIPLSHTMTNTDGTQQSCTIEGITDLTHLVDRIYPDLLS--ADHNCYSDRGILAPTNENIENI 426
PFGG V++ GD+RQ+ PV++ G+ SE+V SS LWKH K LT +MR K D + A+ +L IG+G + E + +P ++ C ++ L LVD +YP++++ +N + D ILAPT E ++ +
Sbjct: 1246 PFGGKVVVLGGDFRQILPVIRKGSRSEVVRATISSSKLWKHCKVLKLTKNMRLKGDFTDNSESDLKEFAEWILKIGDGLLNGDENGEAEIQVP-----------EELCVVQADKPLMDLVDFVYPNIVNDIGKNNFFKDEAILAPTLEIVKEV 1387
BLAST of mRNA_Ecto-sp13_S_contig18235.5650.1 vs. uniprot
Match: A0A2G3AQD7_CAPCH (ATP-dependent DNA helicase n=1 Tax=Capsicum chinense TaxID=80379 RepID=A0A2G3AQD7_CAPCH) HSP 1 Score: 81.6 bits (200), Expect = 2.250e-14 Identity = 45/136 (33.09%), Postives = 74/136 (54.41%), Query Frame = 1
Query: 1 PFGGTCVLMSGDWRQVAPVLKFGTPSEIVEHAFLSSHLWKHVKSFCLTTSMRDKEDLPNAQTVLAIGEGAIQPIELEDGTAVIPLSHTMTNTDGTQQSCTIEGITDLTHLVDRIYPDLLSADHNCYSDRGILAPTN 408
PFGG +++GD+RQ+ P++ GTPSE++ + + + WKH+K + L R +D +T+L IGEG I+ ++E G +VIPL I+ + T L+D ++P + D + R IL+ TN
Sbjct: 293 PFGGKKFILTGDFRQIPPIVPNGTPSEVIAASIKNCYFWKHIKKYHLKLCQRTLDDPHFTETILDIGEGKIESQDVE-GVSVIPLRD-------------IDHVVTTTELIDFVFPKEILKDPDLCCCRAILSGTN 414
BLAST of mRNA_Ecto-sp13_S_contig18235.5650.1 vs. uniprot
Match: UPI001E6935D4 (uncharacterized protein LOC123922418 n=1 Tax=Trifolium pratense TaxID=57577 RepID=UPI001E6935D4) HSP 1 Score: 80.9 bits (198), Expect = 4.940e-14 Identity = 52/153 (33.99%), Postives = 80/153 (52.29%), Query Frame = 1
Query: 1 PFGGTCVLMSGDWRQVAPVLKFGTPSEIVEHAFLSSHLWKHVKSFCLTTSMRDKEDLP-NAQT--------VLAIGEGAIQPIELEDGTAVIPLSHTMTNTDGTQQSCTIEGITDLTHLVDRIYPDLLS--ADHNCYSDRGILAPTNENIENI 426
PFGG V++ GD+RQ+ PV++ G+ SE+V SS LWKH K LT +MR K D N++T +L IG+G + E + IP ++ C + L LVD +YP++++ +N + D ILAPT E ++ +
Sbjct: 1464 PFGGKVVVLGGDFRQILPVIRKGSRSEVVRATISSSKLWKHCKVLKLTKNMRLKGDCTDNSETELREFADWMLKIGDGLLDGDENGEAEIQIP-----------EELCVLNNDKPLLSLVDFVYPNIVNDIGKNNFFQDEAILAPTLEIVKEV 1605
BLAST of mRNA_Ecto-sp13_S_contig18235.5650.1 vs. uniprot
Match: D7G7Y0_ECTSI (ATP-dependent DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Y0_ECTSI) HSP 1 Score: 73.2 bits (178), Expect = 6.940e-14 Identity = 29/47 (61.70%), Postives = 40/47 (85.11%), Query Frame = 3
Query: 507 MPNVVSVEYLHEVNVPGTPPHNLHIKFGSLIFYVGNVNFDSGLVNGR 647
MP++VS+EYL+ +NVPGTPPH ++KFG+LIF++ N+NFD G VNG
Sbjct: 1 MPDIVSLEYLNSINVPGTPPHKFNLKFGALIFFIRNINFDCGPVNGN 47
BLAST of mRNA_Ecto-sp13_S_contig18235.5650.1 vs. uniprot
Match: UPI0010A481F3 (uncharacterized protein LOC114712509 n=3 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A481F3) HSP 1 Score: 79.7 bits (195), Expect = 1.220e-13 Identity = 58/155 (37.42%), Postives = 82/155 (52.90%), Query Frame = 1
Query: 1 PFGGTCVLMSGDWRQVAPVLKFGTPSEIVEHAFLSSHLWKHVKSFCLTTSMR--------DKEDLP-NAQTVLAIGEGAIQPIELEDGTA--VIPLSHTMTNTDGTQQSCTIEGITDLTHLVDRIYPDLLS--ADHNCYSDRGILAPTNENIENI 426
PFGG C++M GD+RQ+ PV+ GT + IV + SS+LW H + F LT +MR D+E L + +L IG+G I + +DG A IP +TN D + +V YPDLL A ++ ++DR ILAPT E + I
Sbjct: 1188 PFGGKCIVMGGDFRQILPVIPKGTRATIVNASINSSYLWNHCRIFKLTKNMRLRKTNSSNDRERLEWFSNWLLNIGDGKIG--QSKDGVADIEIPKQLLLTNYDNALHA-----------IVHSTYPDLLHNLASNDYFNDRAILAPTIEMVNQI 1329
BLAST of mRNA_Ecto-sp13_S_contig18235.5650.1 vs. uniprot
Match: J4H1I3_9APHY (ATP-dependent DNA helicase n=1 Tax=Fibroporia radiculosa TaxID=599839 RepID=J4H1I3_9APHY) HSP 1 Score: 77.0 bits (188), Expect = 9.440e-13 Identity = 46/140 (32.86%), Postives = 71/140 (50.71%), Query Frame = 1
Query: 1 PFGGTCVLMSGDWRQVAPVLKFGTPSEIVEHAFLSSHLWKHVKSFCLTTSMRDKEDLPNAQTVLAIGEGAIQPIELEDGTAVIPLSHTMTNTDGTQQSCTIEGITDLTHLVDRIYPDLLSADHNCYSDRGILAPTNENIE 420
PFGG V++ GD+RQ PV++ GT +IV + LSS LW+ + LT +R+ ED+P A+ V +IG+GA + L+ + ++ L+D +YP AD R ILAPTN+ ++
Sbjct: 334 PFGGKVVVLLGDFRQTCPVIRHGTRRQIVNASILSSPLWRQFSLYRLTQPVRNAEDMPFAEFVDSIGDGAGPHVPLD----------------------MLGKVSHRDELIDFVYPQTTLADPVKCLKRAILAPTNDQVD 451
BLAST of mRNA_Ecto-sp13_S_contig18235.5650.1 vs. uniprot
Match: A0A8I6YMD2_HORVV (ATP-dependent DNA helicase n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=A0A8I6YMD2_HORVV) HSP 1 Score: 74.7 bits (182), Expect = 2.780e-12 Identity = 49/151 (32.45%), Postives = 77/151 (50.99%), Query Frame = 1
Query: 1 PFGGTCVLMSGDWRQVAPVLKFGTPSEIVEHAFLSSHLWKHVKSFCLTTSMRDKEDLPNAQTVLAIGEGAIQP-----IELEDGTAVIPLSHTMTNTDGTQQSCTIEGITDLTHLVDRIYPDLLS--ADHNCYSDRGILAPTNENIENIKI 432
PFGG V+ SGD+RQV PV++ G+ S+I++ SSHLWK ++ L T+MR D A +L +G G + I+L + V P + M D+ L+D ++P L +D N + IL+ TN+N++ I +
Sbjct: 11 PFGGKIVVFSGDFRQVLPVVRRGSHSQIIDATLRSSHLWKGMRQLRLVTNMRAHNDTWFADYLLRVGNGTEEANNHGNIQLREDICV-PSTGEMN---------------DIEKLIDHVFPGLDENMSDRNYMTCHAILSTTNDNVDKINL 145
BLAST of mRNA_Ecto-sp13_S_contig18235.5650.1 vs. uniprot
Match: UPI0007C90C79 (uncharacterized protein LOC103309727 n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=UPI0007C90C79) HSP 1 Score: 74.3 bits (181), Expect = 7.110e-12 Identity = 44/143 (30.77%), Postives = 76/143 (53.15%), Query Frame = 1
Query: 1 PFGGTCVLMSGDWRQVAPVLKFGTPSEIVEHAFLSSHLWKHVKSFCLTTSMRDKEDLPNAQTVLAIGEGAIQPIELEDGTAVIPLSHTMTNTDGTQQSCTIEGITDLTHLVDRIYPDLLS-ADHNCYSDRGILAPTNENIENI 426
PFGG VL +GD+RQ+ PV++ GT S+IV + + LW++++ F LT +MR D A +L +G G + ++ T VIP E + ++ +L+D ++P +S A+ N ++ + IL P N+ +
Sbjct: 278 PFGGKPVLFAGDFRQILPVVRRGTRSDIVRSSIKYNSLWRNLEQFNLTRNMRADNDADFATWLLQLGSGQLPAVDGVQDTVVIPR----------------EMVCEVNNLIDFVFPQQMSLANVNEFARKIILCPRNDECRQV 404 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18235.5650.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig18235.5650.1 >prot_Ecto-sp13_S_contig18235.5650.1 ID=prot_Ecto-sp13_S_contig18235.5650.1|Name=mRNA_Ecto-sp13_S_contig18235.5650.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=139bp MSGDWRQVAPVLKFGTPSEIVEHAFLSSHLWKHVKSFCLTTSMRDKEDLPback to top mRNA from alignment at Ecto-sp13_S_contig18235:2873..3522- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig18235.5650.1 ID=mRNA_Ecto-sp13_S_contig18235.5650.1|Name=mRNA_Ecto-sp13_S_contig18235.5650.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=650bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18235:2873..3522- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18235:2873..3522- >mRNA_Ecto-sp13_S_contig18235.5650.1 ID=mRNA_Ecto-sp13_S_contig18235.5650.1|Name=mRNA_Ecto-sp13_S_contig18235.5650.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=417bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18235:2873..3522- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |