mRNA_Ecto-sp13_S_contig18235.5650.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18235.5650.1
Unique NamemRNA_Ecto-sp13_S_contig18235.5650.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig18235.5650.1 vs. uniprot
Match: D8LCL4_ECTSI (ATP-dependent DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCL4_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 4.340e-21
Identity = 45/74 (60.81%), Postives = 61/74 (82.43%), Query Frame = 3
Query:  429 NFILDKMHGDSHHQLSTDKLVTDDSNMPNVVSVEYLHEVNVPGTPPHNLHIKFGSLIFYVGNVNFDSGLVNGRK 650
            +FIL KM G+ H QLS+DK+V DD NMP+V SVEYL+ +N PGTPPH L++K G+LIF++ N++FD GLVNG++
Sbjct:  572 DFILRKMPGNVHEQLSSDKIVKDDENMPDVASVEYLNIINAPGTPPHKLNLKGGALIFFIRNIDFDCGLVNGKR 645          
BLAST of mRNA_Ecto-sp13_S_contig18235.5650.1 vs. uniprot
Match: D8LEP4_ECTSI (ATP-dependent DNA helicase (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEP4_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 7.440e-20
Identity = 53/140 (37.86%), Postives = 74/140 (52.86%), Query Frame = 1
Query:    7 GGTCVLMSGDWRQVAPVLKFGTPSEIVEHAFLSSHLWKHVKSFCLTTSMRDKEDLPNAQTVLAIGEGAIQPIELEDGTAVIPLSHTMTNTDGTQQSCTIEGITDLTHLVDRIYPDLLSADHNCYSDRGILAPTNENIENI 426
            GG  VL+SGD RQ+ PV+ +G  +E V+ + +SS LW +V    LT S RD+ED P A  V  IG GA      +DG   +PL +             IE       L++ +YPD+L AD   +  R IL+ TN+ I+ I
Sbjct:   25 GGKTVLLSGDMRQIGPVVVYGGQAERVDASIISSPLWPYVHRMRLTISQRDREDAPYAAFVRNIGIGAQPHTTTDDGIDAVPLVYIHDIPAMPPDPFVIENTESFQELINFVYPDILHADPTTFKSRAILSSTNDTIDTI 164          
BLAST of mRNA_Ecto-sp13_S_contig18235.5650.1 vs. uniprot
Match: UPI001E691748 (uncharacterized protein LOC123890262 n=5 Tax=Trifolium pratense TaxID=57577 RepID=UPI001E691748)

HSP 1 Score: 83.6 bits (205), Expect = 5.820e-15
Identity = 50/153 (32.68%), Postives = 80/153 (52.29%), Query Frame = 1
Query:    1 PFGGTCVLMSGDWRQVAPVLKFGTPSEIVEHAFLSSHLWKHVKSFCLTTSMRDKEDLPN---------AQTVLAIGEGAIQPIELEDGTAVIPLSHTMTNTDGTQQSCTIEGITDLTHLVDRIYPDLLS--ADHNCYSDRGILAPTNENIENI 426
            PFGG  V++ GD+RQ+ PV++ G+ SE+V     SS LWKH K   LT +MR K D  +         A+ +L IG+G +   E  +    +P           ++ C ++    L  LVD +YP++++    +N + D  ILAPT E ++ +
Sbjct: 1246 PFGGKVVVLGGDFRQILPVIRKGSRSEVVRATISSSKLWKHCKVLKLTKNMRLKGDFTDNSESDLKEFAEWILKIGDGLLNGDENGEAEIQVP-----------EELCVVQADKPLMDLVDFVYPNIVNDIGKNNFFKDEAILAPTLEIVKEV 1387          
BLAST of mRNA_Ecto-sp13_S_contig18235.5650.1 vs. uniprot
Match: A0A2G3AQD7_CAPCH (ATP-dependent DNA helicase n=1 Tax=Capsicum chinense TaxID=80379 RepID=A0A2G3AQD7_CAPCH)

HSP 1 Score: 81.6 bits (200), Expect = 2.250e-14
Identity = 45/136 (33.09%), Postives = 74/136 (54.41%), Query Frame = 1
Query:    1 PFGGTCVLMSGDWRQVAPVLKFGTPSEIVEHAFLSSHLWKHVKSFCLTTSMRDKEDLPNAQTVLAIGEGAIQPIELEDGTAVIPLSHTMTNTDGTQQSCTIEGITDLTHLVDRIYPDLLSADHNCYSDRGILAPTN 408
            PFGG   +++GD+RQ+ P++  GTPSE++  +  + + WKH+K + L    R  +D    +T+L IGEG I+  ++E G +VIPL               I+ +   T L+D ++P  +  D +    R IL+ TN
Sbjct:  293 PFGGKKFILTGDFRQIPPIVPNGTPSEVIAASIKNCYFWKHIKKYHLKLCQRTLDDPHFTETILDIGEGKIESQDVE-GVSVIPLRD-------------IDHVVTTTELIDFVFPKEILKDPDLCCCRAILSGTN 414          
BLAST of mRNA_Ecto-sp13_S_contig18235.5650.1 vs. uniprot
Match: UPI001E6935D4 (uncharacterized protein LOC123922418 n=1 Tax=Trifolium pratense TaxID=57577 RepID=UPI001E6935D4)

HSP 1 Score: 80.9 bits (198), Expect = 4.940e-14
Identity = 52/153 (33.99%), Postives = 80/153 (52.29%), Query Frame = 1
Query:    1 PFGGTCVLMSGDWRQVAPVLKFGTPSEIVEHAFLSSHLWKHVKSFCLTTSMRDKEDLP-NAQT--------VLAIGEGAIQPIELEDGTAVIPLSHTMTNTDGTQQSCTIEGITDLTHLVDRIYPDLLS--ADHNCYSDRGILAPTNENIENI 426
            PFGG  V++ GD+RQ+ PV++ G+ SE+V     SS LWKH K   LT +MR K D   N++T        +L IG+G +   E  +    IP           ++ C +     L  LVD +YP++++    +N + D  ILAPT E ++ +
Sbjct: 1464 PFGGKVVVLGGDFRQILPVIRKGSRSEVVRATISSSKLWKHCKVLKLTKNMRLKGDCTDNSETELREFADWMLKIGDGLLDGDENGEAEIQIP-----------EELCVLNNDKPLLSLVDFVYPNIVNDIGKNNFFQDEAILAPTLEIVKEV 1605          
BLAST of mRNA_Ecto-sp13_S_contig18235.5650.1 vs. uniprot
Match: D7G7Y0_ECTSI (ATP-dependent DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Y0_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 6.940e-14
Identity = 29/47 (61.70%), Postives = 40/47 (85.11%), Query Frame = 3
Query:  507 MPNVVSVEYLHEVNVPGTPPHNLHIKFGSLIFYVGNVNFDSGLVNGR 647
            MP++VS+EYL+ +NVPGTPPH  ++KFG+LIF++ N+NFD G VNG 
Sbjct:    1 MPDIVSLEYLNSINVPGTPPHKFNLKFGALIFFIRNINFDCGPVNGN 47          
BLAST of mRNA_Ecto-sp13_S_contig18235.5650.1 vs. uniprot
Match: UPI0010A481F3 (uncharacterized protein LOC114712509 n=3 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A481F3)

HSP 1 Score: 79.7 bits (195), Expect = 1.220e-13
Identity = 58/155 (37.42%), Postives = 82/155 (52.90%), Query Frame = 1
Query:    1 PFGGTCVLMSGDWRQVAPVLKFGTPSEIVEHAFLSSHLWKHVKSFCLTTSMR--------DKEDLP-NAQTVLAIGEGAIQPIELEDGTA--VIPLSHTMTNTDGTQQSCTIEGITDLTHLVDRIYPDLLS--ADHNCYSDRGILAPTNENIENI 426
            PFGG C++M GD+RQ+ PV+  GT + IV  +  SS+LW H + F LT +MR        D+E L   +  +L IG+G I   + +DG A   IP    +TN D    +           +V   YPDLL   A ++ ++DR ILAPT E +  I
Sbjct: 1188 PFGGKCIVMGGDFRQILPVIPKGTRATIVNASINSSYLWNHCRIFKLTKNMRLRKTNSSNDRERLEWFSNWLLNIGDGKIG--QSKDGVADIEIPKQLLLTNYDNALHA-----------IVHSTYPDLLHNLASNDYFNDRAILAPTIEMVNQI 1329          
BLAST of mRNA_Ecto-sp13_S_contig18235.5650.1 vs. uniprot
Match: J4H1I3_9APHY (ATP-dependent DNA helicase n=1 Tax=Fibroporia radiculosa TaxID=599839 RepID=J4H1I3_9APHY)

HSP 1 Score: 77.0 bits (188), Expect = 9.440e-13
Identity = 46/140 (32.86%), Postives = 71/140 (50.71%), Query Frame = 1
Query:    1 PFGGTCVLMSGDWRQVAPVLKFGTPSEIVEHAFLSSHLWKHVKSFCLTTSMRDKEDLPNAQTVLAIGEGAIQPIELEDGTAVIPLSHTMTNTDGTQQSCTIEGITDLTHLVDRIYPDLLSADHNCYSDRGILAPTNENIE 420
            PFGG  V++ GD+RQ  PV++ GT  +IV  + LSS LW+    + LT  +R+ ED+P A+ V +IG+GA   + L+                       +  ++    L+D +YP    AD      R ILAPTN+ ++
Sbjct:  334 PFGGKVVVLLGDFRQTCPVIRHGTRRQIVNASILSSPLWRQFSLYRLTQPVRNAEDMPFAEFVDSIGDGAGPHVPLD----------------------MLGKVSHRDELIDFVYPQTTLADPVKCLKRAILAPTNDQVD 451          
BLAST of mRNA_Ecto-sp13_S_contig18235.5650.1 vs. uniprot
Match: A0A8I6YMD2_HORVV (ATP-dependent DNA helicase n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=A0A8I6YMD2_HORVV)

HSP 1 Score: 74.7 bits (182), Expect = 2.780e-12
Identity = 49/151 (32.45%), Postives = 77/151 (50.99%), Query Frame = 1
Query:    1 PFGGTCVLMSGDWRQVAPVLKFGTPSEIVEHAFLSSHLWKHVKSFCLTTSMRDKEDLPNAQTVLAIGEGAIQP-----IELEDGTAVIPLSHTMTNTDGTQQSCTIEGITDLTHLVDRIYPDLLS--ADHNCYSDRGILAPTNENIENIKI 432
            PFGG  V+ SGD+RQV PV++ G+ S+I++    SSHLWK ++   L T+MR   D   A  +L +G G  +      I+L +   V P +  M                D+  L+D ++P L    +D N  +   IL+ TN+N++ I +
Sbjct:   11 PFGGKIVVFSGDFRQVLPVVRRGSHSQIIDATLRSSHLWKGMRQLRLVTNMRAHNDTWFADYLLRVGNGTEEANNHGNIQLREDICV-PSTGEMN---------------DIEKLIDHVFPGLDENMSDRNYMTCHAILSTTNDNVDKINL 145          
BLAST of mRNA_Ecto-sp13_S_contig18235.5650.1 vs. uniprot
Match: UPI0007C90C79 (uncharacterized protein LOC103309727 n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=UPI0007C90C79)

HSP 1 Score: 74.3 bits (181), Expect = 7.110e-12
Identity = 44/143 (30.77%), Postives = 76/143 (53.15%), Query Frame = 1
Query:    1 PFGGTCVLMSGDWRQVAPVLKFGTPSEIVEHAFLSSHLWKHVKSFCLTTSMRDKEDLPNAQTVLAIGEGAIQPIELEDGTAVIPLSHTMTNTDGTQQSCTIEGITDLTHLVDRIYPDLLS-ADHNCYSDRGILAPTNENIENI 426
            PFGG  VL +GD+RQ+ PV++ GT S+IV  +   + LW++++ F LT +MR   D   A  +L +G G +  ++    T VIP                 E + ++ +L+D ++P  +S A+ N ++ + IL P N+    +
Sbjct:  278 PFGGKPVLFAGDFRQILPVVRRGTRSDIVRSSIKYNSLWRNLEQFNLTRNMRADNDADFATWLLQLGSGQLPAVDGVQDTVVIPR----------------EMVCEVNNLIDFVFPQQMSLANVNEFARKIILCPRNDECRQV 404          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18235.5650.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCL4_ECTSI4.340e-2160.81ATP-dependent DNA helicase n=1 Tax=Ectocarpus sili... [more]
D8LEP4_ECTSI7.440e-2037.86ATP-dependent DNA helicase (Fragment) n=1 Tax=Ecto... [more]
UPI001E6917485.820e-1532.68uncharacterized protein LOC123890262 n=5 Tax=Trifo... [more]
A0A2G3AQD7_CAPCH2.250e-1433.09ATP-dependent DNA helicase n=1 Tax=Capsicum chinen... [more]
UPI001E6935D44.940e-1433.99uncharacterized protein LOC123922418 n=1 Tax=Trifo... [more]
D7G7Y0_ECTSI6.940e-1461.70ATP-dependent DNA helicase n=1 Tax=Ectocarpus sili... [more]
UPI0010A481F31.220e-1337.42uncharacterized protein LOC114712509 n=3 Tax=Proso... [more]
J4H1I3_9APHY9.440e-1332.86ATP-dependent DNA helicase n=1 Tax=Fibroporia radi... [more]
A0A8I6YMD2_HORVV2.780e-1232.45ATP-dependent DNA helicase n=1 Tax=Hordeum vulgare... [more]
UPI0007C90C797.110e-1230.77uncharacterized protein LOC103309727 n=1 Tax=Acyrt... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18235contigEcto-sp13_S_contig18235:2873..3522 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score87.8
Seed ortholog evalue4.3e-15
Seed eggNOG ortholog2880.D8LEP4
Model size650
KEGG koko:K15255
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.G-quadruplex DNA unwinding
EggNOG OGsCOG0507@1,KOG0987@2759
EC3.6.4.12
Cds size417
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029,ko03032
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462940.3209603-UTR-Ecto-sp13_S_contig18235:2872..30811681462940.3209603-UTR-Ecto-sp13_S_contig18235:2872..3081Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18235 2873..3081 -
1681462940.3460884-UTR-Ecto-sp13_S_contig18235:3498..35221681462940.3460884-UTR-Ecto-sp13_S_contig18235:3498..3522Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18235 3499..3522 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462940.3329737-CDS-Ecto-sp13_S_contig18235:3081..34981681462940.3329737-CDS-Ecto-sp13_S_contig18235:3081..3498Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18235 3082..3498 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18235.5650.1prot_Ecto-sp13_S_contig18235.5650.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18235 3082..3498 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18235.5650.1

>prot_Ecto-sp13_S_contig18235.5650.1 ID=prot_Ecto-sp13_S_contig18235.5650.1|Name=mRNA_Ecto-sp13_S_contig18235.5650.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=139bp
MSGDWRQVAPVLKFGTPSEIVEHAFLSSHLWKHVKSFCLTTSMRDKEDLP
NAQTVLAIGEGAIQPIELEDGTAVIPLSHTMTNTDGTQQSCTIEGITDLT
HLVDRIYPDLLSADHNCYSDRGILAPTNENIENIKISY*
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mRNA from alignment at Ecto-sp13_S_contig18235:2873..3522-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18235.5650.1 ID=mRNA_Ecto-sp13_S_contig18235.5650.1|Name=mRNA_Ecto-sp13_S_contig18235.5650.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=650bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18235:2873..3522- (Ectocarpus species13 EcNAP12_S_4_19m)
CCTTTCGGGGGGACGTGTGTCCTCATGTCAGGAGATTGGCGTCAAGTTGC GCCCGTACTCAAATTCGGCACTCCATCAGAAATTGTAGAACACGCTTTTC TCTCGTCGCATTTATGGAAACACGTCAAAAGTTTTTGTCTAACCACGTCA ATGAGGGACAAGGAAGACTTGCCGAACGCGCAAACCGTTCTGGCAATCGG AGAAGGAGCAATCCAACCCATCGAATTGGAGGATGGAACAGCGGTCATAC CGCTGTCACATACAATGACCAACACAGACGGCACCCAACAAAGTTGTACC ATAGAGGGAATTACAGACTTAACGCATCTCGTTGACCGCATCTATCCAGA CCTACTTTCCGCCGACCACAACTGTTACAGTGACCGGGGAATCTTGGCAC CAACAAACGAAAACATTGAAAACATCAAAATTTCATACTAGACAAGATGC ACGGTGATAGCCACCACCAACTTAGCACGGACAAATTGGTTACCGACGAC AGTAACATGCCCAATGTTGTGTCTGTTGAATATTTACATGAAGTCAACGT TCCTGGAACACCTCCACACAACCTTCATATCAAATTTGGATCCCTCATTT TCTATGTTGGGAACGTCAACTTTGACAGCGGGCTCGTCAACGGCCGCAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18235:2873..3522-

>mRNA_Ecto-sp13_S_contig18235.5650.1 ID=mRNA_Ecto-sp13_S_contig18235.5650.1|Name=mRNA_Ecto-sp13_S_contig18235.5650.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=417bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18235:2873..3522- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCAGGAGATTGGCGTCAAGTTGCGCCCGTACTCAAATTCGGCACTCC
ATCAGAAATTGTAGAACACGCTTTTCTCTCGTCGCATTTATGGAAACACG
TCAAAAGTTTTTGTCTAACCACGTCAATGAGGGACAAGGAAGACTTGCCG
AACGCGCAAACCGTTCTGGCAATCGGAGAAGGAGCAATCCAACCCATCGA
ATTGGAGGATGGAACAGCGGTCATACCGCTGTCACATACAATGACCAACA
CAGACGGCACCCAACAAAGTTGTACCATAGAGGGAATTACAGACTTAACG
CATCTCGTTGACCGCATCTATCCAGACCTACTTTCCGCCGACCACAACTG
TTACAGTGACCGGGGAATCTTGGCACCAACAAACGAAAACATTGAAAACA
TCAAAATTTCATACTAG
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