mRNA_Ecto-sp13_S_contig18213.5640.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18213.5640.1
Unique NamemRNA_Ecto-sp13_S_contig18213.5640.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig18213.5640.1 vs. uniprot
Match: A0A6H5K9L6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9L6_9PHAE)

HSP 1 Score: 323 bits (827), Expect = 2.870e-109
Identity = 155/166 (93.37%), Postives = 159/166 (95.78%), Query Frame = 1
Query:    1 MDVDVDKFQERELYGFGQNACGELGLGDTLERHTPTLSHTSRGKDIVDVTAGNELTAVLTNTGEVYSCGYNSEGQCGIGAIDETVPETVPSLTKVTLREPSFQPAGRVSLVHSGNGSEHLVFVTEEGELQTCGRNDSGQLGHGEAGKGYSLPRPVAGFAGYRVTKV 498
            MDVDV++FQERELYGFGQNACGELGLGDTLERHTPTLS TSRGKDIVDVTAGNELTAVLTNTGEVYSCGYN EGQCGIG IDETVPETVPSLTKV LREPSF+PAGRVSLVHSGNG EHLV VTEEG+LQTCGRNDSGQLGHGE GKGYSLPRPVAGFAGYRVTKV
Sbjct:    1 MDVDVNRFQERELYGFGQNACGELGLGDTLERHTPTLSQTSRGKDIVDVTAGNELTAVLTNTGEVYSCGYNCEGQCGIGEIDETVPETVPSLTKVNLREPSFRPAGRVSLVHSGNGCEHLVLVTEEGKLQTCGRNDSGQLGHGEVGKGYSLPRPVAGFAGYRVTKV 166          
BLAST of mRNA_Ecto-sp13_S_contig18213.5640.1 vs. uniprot
Match: D7G3F9_ECTSI (BTB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F9_ECTSI)

HSP 1 Score: 324 bits (831), Expect = 4.890e-107
Identity = 156/166 (93.98%), Postives = 160/166 (96.39%), Query Frame = 1
Query:    1 MDVDVDKFQERELYGFGQNACGELGLGDTLERHTPTLSHTSRGKDIVDVTAGNELTAVLTNTGEVYSCGYNSEGQCGIGAIDETVPETVPSLTKVTLREPSFQPAGRVSLVHSGNGSEHLVFVTEEGELQTCGRNDSGQLGHGEAGKGYSLPRPVAGFAGYRVTKV 498
            MDVD+D+FQERELYGFGQNACGELGLGDTLERHTPTLS TSRGKDIV VTAGNELTAVLTNTGEVYSCGYNSEGQCGIG IDETVPE VPSLTKVTLREPSF+PAGRVSLVHSGNGSEHLV VTEEGELQTCGRN+SGQLGHGE GKGYSLPRPVAGFAGYRVTKV
Sbjct:    1 MDVDIDRFQERELYGFGQNACGELGLGDTLERHTPTLSQTSRGKDIVGVTAGNELTAVLTNTGEVYSCGYNSEGQCGIGEIDETVPEMVPSLTKVTLREPSFRPAGRVSLVHSGNGSEHLVVVTEEGELQTCGRNNSGQLGHGEVGKGYSLPRPVAGFAGYRVTKV 166          
BLAST of mRNA_Ecto-sp13_S_contig18213.5640.1 vs. uniprot
Match: A0A7S3XQJ6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQJ6_HETAK)

HSP 1 Score: 161 bits (407), Expect = 1.090e-43
Identity = 83/157 (52.87%), Postives = 104/157 (66.24%), Query Frame = 1
Query:   28 ERELYGFGQNACGELGLGDTLERHTPTLSHTSRGKDIVDVTAGNELTAVLTNTGEVYSCGYNSEGQCGIGAIDETVPETVPSLTKVTLREPSFQPAGRVSLVHSGNGSEHLVFVTEEGELQTCGRNDSGQLGHGEAGKGYSLPRPVAGFAGYRVTKV 498
            +RE+Y  GQN+ GELG GDT ERH P+L   S GKDIV V AGNE TA+LT  GEV+ CGYN  GQCG+G       + VP+LTK    +       +V+ +H+ NGSEHL+ VT++GEL +CG N  GQLGHG AG  Y+ PR V    G+RVT+V
Sbjct:   78 QREVYTIGQNSYGELGHGDTAERHLPSLVQFSLGKDIVQVAAGNEFTAMLTAAGEVFCCGYNDSGQCGLGGT-----QRVPNLTKAEGIDHK-----KVTFIHTANGSEHLLLVTDDGELYSCGYNSKGQLGHGAAGAAYA-PRLVEALYGHRVTRV 223          
BLAST of mRNA_Ecto-sp13_S_contig18213.5640.1 vs. uniprot
Match: A0A7S2V1B2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1B2_9STRA)

HSP 1 Score: 153 bits (387), Expect = 8.610e-41
Identity = 81/158 (51.27%), Postives = 100/158 (63.29%), Query Frame = 1
Query:   25 QERELYGFGQNACGELGLGDTLERHTPTLSHTSRGKDIVDVTAGNELTAVLTNTGEVYSCGYNSEGQCGIGAIDETVPETVPSLTKVTLREPSFQPAGRVSLVHSGNGSEHLVFVTEEGELQTCGRNDSGQLGHGEAGKGYSLPRPVAGFAGYRVTKV 498
            +ERE+Y  GQN+ GELG GDT+ERH P L+  ++GK I+ V AGNE TA+L + G VY CGYN  GQCG G          PS  K+   E   +   +V ++HS NGSEHL+ VTEEGEL +CG N  GQLG G  G  +S PR V    G+RVTKV
Sbjct:   10 EEREVYTLGQNSYGELGHGDTVERHLPALADFAKGKGIIQVCAGNEFTALLGSDGSVYGCGYNDSGQCGTGGTGRC-----PSFRKIEAPELREK---KVVMIHSANGSEHLLLVTEEGELFSCGYNSKGQLGLGTNGNAFS-PRLVGALYGHRVTKV 158          
BLAST of mRNA_Ecto-sp13_S_contig18213.5640.1 vs. uniprot
Match: A0A7S2RUI3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RUI3_9STRA)

HSP 1 Score: 128 bits (322), Expect = 2.310e-31
Identity = 73/156 (46.79%), Postives = 90/156 (57.69%), Query Frame = 1
Query:   31 RELYGFGQNACGELGLGDTLERHTPTLSHTSRGKDIVDVTAGNELTAVLTNTGEVYSCGYNSEGQCGIGAIDETVPETVPSLTKVTLREPSFQPAGRVSLVHSGNGSEHLVFVTEEGELQTCGRNDSGQLGHGEAGKGYSLPRPVAGFAGYRVTKV 498
            R+LY FGQN+ GELG GDT ERH+P L   S  +D+V + AGNE T +LT +  V++CGYN  GQC +G     V   V  LT+V      F+   RV ++H+ NG EH   VTE GEL TCG N  GQLGHG        P  V    G RV +V
Sbjct:   39 RKLYSFGQNSYGELGHGDTAERHSPALVELSLKEDVVGICAGNEHTLLLTGSNTVFACGYNDSGQCAVG-----VNSRVSELTEVA----DFK-GKRVVMIHAANGCEHQCAVTELGELFTCGYNSRGQLGHGHTSP-VVRPMLVDALFGRRVLQV 183          
BLAST of mRNA_Ecto-sp13_S_contig18213.5640.1 vs. uniprot
Match: A0A7S1C8F2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C8F2_9STRA)

HSP 1 Score: 120 bits (301), Expect = 8.410e-30
Identity = 74/159 (46.54%), Postives = 87/159 (54.72%), Query Frame = 1
Query:   25 QERELYGFGQNACGELGLGDTLERHTPTLSHTSRGKDIVDVTAGNELTAVLTNTGEVYSCGYNSEGQCGIGAIDETVPETVPSLTKVTLREPSFQPAGRVSLVHSGNGSEHLVFVTEEGELQTCGRNDSGQLGHGEAGKGYSLPRPVAGFA--GYRVTK 495
            QE  +  FGQNA  ELG GDT+ERH PT+    RG  +  + AGNE + VL + G V SCGYN  GQCGIG         V +LT V       + AG V  + S NG EHLV +T +G L TCG N  GQLGHG      S P+ V  F   G RV K
Sbjct:  136 QEALVLSFGQNAYCELGHGDTVERHVPTVVEALRGHSVRQIVAGNEHSCVLCDDGSVLSCGYNDSGQCGIGQTGR-----VTTLTHVV----ELEGAG-VEYIQSANGCEHLVAITVDGSLFTCGYNARGQLGHGSTASQTS-PKLVDFFVANGKRVVK 283          
BLAST of mRNA_Ecto-sp13_S_contig18213.5640.1 vs. uniprot
Match: A0A1V9YPY5_9STRA (RCC1 and BTB domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YPY5_9STRA)

HSP 1 Score: 120 bits (302), Expect = 7.850e-29
Identity = 66/159 (41.51%), Postives = 93/159 (58.49%), Query Frame = 1
Query:   25 QERELYGFGQNACGELGLGDTLERHTPTLSHTSRGKDIVDVTAGNELTAVLTNTGEVYSCGYNSEGQCGIGAIDETVP-ETVPSLTKVTLREPSFQPAGRVSLVHSGNGSEHLVFVTEEGELQTCGRNDSGQLGHGEAGKGYSLPRPVAGFAGYRVTKV 498
            +E  +Y FGQN+ GELG GDT  R  P+    + GK+IVDV  GNE T +L   GEVY+CGYN  GQCG+G +      + +P+L         F+   +V  + +GNG EH++ +T++G++ T G N  GQLGHG      ++P  V G +G  V KV
Sbjct:   12 EEVAVYTFGQNSYGELGHGDTTTRFVPSKLDFAVGKNIVDVACGNENTILLCGNGEVYACGYNDSGQCGVGTVQRVTSFKALPAL---------FEK--QVVKLSAGNGCEHVIAITDKGDVYTFGYNARGQLGHGNTTP-VAVPTLVEGLSGKSVLKV 158          
BLAST of mRNA_Ecto-sp13_S_contig18213.5640.1 vs. uniprot
Match: T0SDB9_SAPDV (BTB domain-containing protein n=2 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0SDB9_SAPDV)

HSP 1 Score: 119 bits (297), Expect = 3.750e-28
Identity = 69/158 (43.67%), Postives = 89/158 (56.33%), Query Frame = 1
Query:   25 QERELYGFGQNACGELGLGDTLERHTPTLSHTSRGKDIVDVTAGNELTAVLTNTGEVYSCGYNSEGQCGIGAIDETVPETVPSLTKVTLREPSFQPAGRVSLVHSGNGSEHLVFVTEEGELQTCGRNDSGQLGHGEAGKGYSLPRPVAGFAGYRVTKV 498
            +E  ++ FGQN+ GELG GDT  R  PT    + GK+IVDV  GNE T +L + G+VY+CGYN  GQCGIG    T          + L E       +V  + +GNG EH+V VTE G++ T G N  GQLGHG   +  ++P  V G  G  V KV
Sbjct:    7 EEVAVFTFGQNSYGELGHGDTTTRFVPTKLEFAVGKNIVDVACGNENTVLLCSNGDVYACGYNDSGQCGIG----TAQRVTSFKALMALCEK------QVVKLSAGNGCEHVVAVTETGDVYTFGYNARGQLGHGNT-QPVAVPTLVDGLVGKSVLKV 153          
BLAST of mRNA_Ecto-sp13_S_contig18213.5640.1 vs. uniprot
Match: A0A067CWS2_SAPPC (BTB domain-containing protein (Fragment) n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CWS2_SAPPC)

HSP 1 Score: 118 bits (296), Expect = 5.290e-28
Identity = 68/158 (43.04%), Postives = 89/158 (56.33%), Query Frame = 1
Query:   25 QERELYGFGQNACGELGLGDTLERHTPTLSHTSRGKDIVDVTAGNELTAVLTNTGEVYSCGYNSEGQCGIGAIDETVPETVPSLTKVTLREPSFQPAGRVSLVHSGNGSEHLVFVTEEGELQTCGRNDSGQLGHGEAGKGYSLPRPVAGFAGYRVTKV 498
            +E  ++ FGQN+ GELG GDT  R  PT    + GK+IVDV  GNE T +L + G+VY+CGYN  GQCG+G    T          + L E       +V  + +GNG EH+V VTE G++ T G N  GQLGHG   +  ++P  V G  G  V KV
Sbjct:   13 EEVAVFTFGQNSYGELGHGDTTTRFVPTKLEFAVGKNIVDVACGNENTVLLCSNGDVYACGYNDSGQCGVG----TAQRITSFKALMALCEK------QVVKLSAGNGCEHVVAVTESGDVYTFGYNARGQLGHGNT-QPVAVPTLVDGLVGKSVLKV 159          
BLAST of mRNA_Ecto-sp13_S_contig18213.5640.1 vs. uniprot
Match: A0A6G0XKB1_9STRA (BTB domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XKB1_9STRA)

HSP 1 Score: 117 bits (294), Expect = 9.850e-28
Identity = 66/165 (40.00%), Postives = 90/165 (54.55%), Query Frame = 1
Query:    4 DVDVDKFQERELYGFGQNACGELGLGDTLERHTPTLSHTSRGKDIVDVTAGNELTAVLTNTGEVYSCGYNSEGQCGIGAIDETVPETVPSLTKVTLREPSFQPAGRVSLVHSGNGSEHLVFVTEEGELQTCGRNDSGQLGHGEAGKGYSLPRPVAGFAGYRVTKV 498
            +++ ++  +  +Y FGQNA GELG GDT+ R  PTL     GK+++DV  GNE T VL   G+V+ CGYN  GQCG+G            +T +  ++        V  + +GNG EH+  VT+ GEL T G N  GQLGHG      + P  V GF+   V KV
Sbjct:    4 EMNPERSSQVSVYTFGQNAYGELGHGDTIPRAVPTLVSFCEGKNVMDVACGNENTIVLCENGQVFVCGYNDSGQCGMGTTQRV--HAFKLITGLVDKQ--------VVKLSAGNGCEHVAAVTDLGELYTFGYNARGQLGHGSTAA-CAFPTRVLGFSQKSVVKV 157          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18213.5640.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K9L6_9PHAE2.870e-10993.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3F9_ECTSI4.890e-10793.98BTB domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S3XQJ6_HETAK1.090e-4352.87Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2V1B2_9STRA8.610e-4151.27Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2RUI3_9STRA2.310e-3146.79Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S1C8F2_9STRA8.410e-3046.54Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A1V9YPY5_9STRA7.850e-2941.51RCC1 and BTB domain-containing protein n=1 Tax=Ach... [more]
T0SDB9_SAPDV3.750e-2843.67BTB domain-containing protein n=2 Tax=Saprolegnia ... [more]
A0A067CWS2_SAPPC5.290e-2843.04BTB domain-containing protein (Fragment) n=2 Tax=S... [more]
A0A6G0XKB1_9STRA9.850e-2840.00BTB domain-containing protein n=1 Tax=Aphanomyces ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18213contigEcto-sp13_S_contig18213:146..3314 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score323.6
Seed ortholog evalue5.6e-86
Seed eggNOG ortholog2880.D7G3F9
Model size498
KEGG koko:K11494
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG5184@1,KOG1426@2759
Cds size498
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462939.4431584-CDS-Ecto-sp13_S_contig18213:145..2331681462939.4431584-CDS-Ecto-sp13_S_contig18213:145..233Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18213 146..233 -
1681462939.4530225-CDS-Ecto-sp13_S_contig18213:1129..12571681462939.4530225-CDS-Ecto-sp13_S_contig18213:1129..1257Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18213 1130..1257 -
1681462939.4612284-CDS-Ecto-sp13_S_contig18213:2022..21121681462939.4612284-CDS-Ecto-sp13_S_contig18213:2022..2112Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18213 2023..2112 -
1681462939.4693837-CDS-Ecto-sp13_S_contig18213:2375..25221681462939.4693837-CDS-Ecto-sp13_S_contig18213:2375..2522Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18213 2376..2522 -
1681462939.4775496-CDS-Ecto-sp13_S_contig18213:3269..33141681462939.4775496-CDS-Ecto-sp13_S_contig18213:3269..3314Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18213 3270..3314 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18213.5640.1prot_Ecto-sp13_S_contig18213.5640.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18213 146..3314 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18213.5640.1

>prot_Ecto-sp13_S_contig18213.5640.1 ID=prot_Ecto-sp13_S_contig18213.5640.1|Name=mRNA_Ecto-sp13_S_contig18213.5640.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=166bp
MDVDVDKFQERELYGFGQNACGELGLGDTLERHTPTLSHTSRGKDIVDVT
AGNELTAVLTNTGEVYSCGYNSEGQCGIGAIDETVPETVPSLTKVTLREP
SFQPAGRVSLVHSGNGSEHLVFVTEEGELQTCGRNDSGQLGHGEAGKGYS
LPRPVAGFAGYRVTKV
back to top

mRNA from alignment at Ecto-sp13_S_contig18213:146..3314-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18213.5640.1 ID=mRNA_Ecto-sp13_S_contig18213.5640.1|Name=mRNA_Ecto-sp13_S_contig18213.5640.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3169bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18213:146..3314- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACGTTGATGTCGATAAGTTCCAAGAGCGGGAGCTGTACGGGGTAAG TACAAGCGGAGAGCGTAGCAAGAGATATGCTGTATTCTTGGCTGATTCAC GCTTGTTGTGCAGCCCTCCTCTACTGTAATCCTCTACTGCTGTACTGCCG AAGAAGGGCACAGGTGCTGTCACACATGTACATACAGCAGTAGCATACAC AGATTGGCAGTACTGTATTGCGAGAGCGAATCCTTGTCGTTCTTCAAGGT GACACGGTGGTGGGCTAACGAAATCTTCAAACAGTTGTGTCCTTGCTATC GCTTACATAGCTGTCACGAGTTGATCAGCGATGGGCCGGTTGTGCTGGAC GTACGTAATGTCTACAGCACAGCAGCAGTACAGCTACGCACGGAATTCTC GCCGCAACTCCTACGATCCTTGCGTAGGACACGAATTGATGAGGATGGGT GCATCGTGTGTGGAATATACATGCTGATACAAGCGCAATGATCACGTGGT TGAGAAAGCGAGGGTTCTCCAATGATCCCGGTATTGCCCACGATGTACCA GCTCTAAACTGCTGCAGGTCAGCAGGTCAGCCCAACATATCATAACGACA TGTCTCCCTCGGTCGCCGCTGTAACTTGTTACACAAGGAGCGTCAAAGCA ATGCGCGGGGACCTGATGCATGACGATTTGCATAGCACGACCGTATGTGA GGCCTACGGCTTTGGGCACCCCGCTGTTCGGCCCTACTACTGCCGTGGGT GCCAACCCGCTTGCCCGACCGTCTTTCGCAACACCTCGACAGTTTGGTCA GAACGCTTGCGGAGAGCTAGGGCTGGGAGACACGCTCGAGCGCCACACGC CTACCCTCTCGCACACCTCCCGCGGGAAGGACATCGTTGACGTCACTGCG GGGAACGAGCTCACAGCCGTTCTCACCAACACCGGCGAAGTGAGAGAGCA GGGCGACGGGTAGGACATCAGTAGCTAATGGCGTGCTTTGGTCGACGTGA TCTCACCTAGACGTAGCTCATGGATGCGCTCTCGTTTGCGGCACTTTGAA AATAATTCGCCCCCTCTCCTGAGCTGGCTCTGTATCGTGCAACCGGTCTA CATTCCACCACCACCACCCCTGCCCTCACACGTCCCGTATTTTTCATCAC GTGCATTCGGACCGCCCCACACGCGGCTTACCCCGTCGTCTGTGTTCCGC AGGTCTACAGCTGTGGATACAACAGCGAGGGGCAATGTGGGATCGGGGCG ATCGACGAAACGGTGCCAGAAACGGTTCCGTCGTTGACCAAGGTGACACC TAGGGTCTTTGTTGCGCGATTGCATTTTCCGTAGTCTACACAGGTAGATT ATTATGTCGTGCTGTGTTCGTTCTGGCCGCTACGATGTGGTACCTCTCCT CTCTTCCGAGATGGCCAAAATAGTTTGTAAATCCAGTTAGTTGTCGACGG CTAGCACGGCTGCAACCAAGCGCTCCTTGCTTAACGCTGTTCTGTATCCA AGGCCTCGCCCAGCAAAGTGCGCATGATGTTGCATTTTCTTGTTGTTCTT GTCGTCGCGTTATATCGGCGCTTGCAGCGTCTCTGCCGGGAAGGAGCTCC TACCCGTGTATGACTGTATGGCCGACTAAGAACGATGCTAAACAATGGTC TCACGTACTCTCGAAGAGGTGATTTCGTTTCGATCCGCGCGGGGCCGCCC ACTTGCTTCCCAACCACGAAACAATCAACAATCATACAGCGCACAGTCAA ACGTAGAACTCTATTGTCCACCCTAAGCATGGCAAACCCTTGCTGCAGCA GGTTTCACGAAAGACGTTAAGCTTCAAACCCCATCTCGCCAAGCACGAGT TTACCGTTCGCTGCTGCTGAGTTCACGAGTGAGGGCACTCACGCTTTGGT GTTGGCGTCTGACGATAGCTAACTTGAGTTCAACCACCAAGAATGACTGC TCATTGGTCAAACTCTCAGCCATGAGAACGATTTGACTGCTGTACTGAAA ATTTATGTGGACCACCCGTGAGGTCTGCCGTGACTATTGTCGGCGCTCCT GTGTCAGGTGACTCTTCGGGAGCCAAGCTTTCAACCTGCCGGCCGTGTGT CTCTGGTCCACTCTGGTAACGGCTCCGAGCATCTTGTGTTTGTGACGGAG GAGGGGGAACTCCAAACATGCGGCCGCAACGACTCGTGAGTAGATGTGGA AGCTCCGTTGCACGTAGGGTACAGGGAAGTTTGTGAGAATGTGATTCATG AGTGGTAGAAGAAAATCGAAAATCAGAAAATCAAAGGGGTAAATTGGGGG GGGGTACATCGACAAAACGGCAGTTCGTGGGGAAGGAGAGAATCGGGGTT GGCAAGGACGGCACACTTGTGTGTGTGTGGGTCACCCCCTTTATTCTGGA CGTCGGATTCTACCCTATTTGGTATGTCGCATGGACACATCAGCCGCGGT CATGCAGGAGGAGGGCCGCACAGGAGGTCCTTGCTATTTTCCCCACCTTT GCTCTGCGATGCTTGCCTCAACGGTGTGGCGAGAAGGGTTCAGTCCTTCT CTCCCCCCACGGGCCGTGAGATCGGCTCTGTTGCGGTCGCACACTTGATT GGCTATCCCCATCATTTGAGCACATCGCGGGAAGAAAAACACGTTCATGT GTATGACTGCGCAACGGCCCCGACCATGAAGCTATGAGGTTACTAGTTGA ACCCAAAAGCCACTCCTACATGAGCTGAGCACGACCCATCCAGCAACCGC AGCGCCTACATGAGCTCCGCACGACAACGCAATGCTGTCCACCTGGCAGC ACCATCCCCTCTCTCCCTCCGTCCCGTCTTGCCATTTCCCGCCTCCGTAC CATCCCCTCCGTCTCCGTACCATCTCCGTCCCGTCTCGTACCATCTCCAT ATTGGTTCGACCTGTGCTGCCCAGTACTGCCTGGATACCGTCCCGCACCA ACCCATATTTTCCGCTGGTCGTGCCTCATCAACACCTGACACATGTCCTG CTCGTATCTATCTCTGCTTTCTGGCGCCGGTCATTTCGTGGTACCCTTAT CGCCTCCGCGTTTACACGGCCTTCCGATCAGGGGGCAGCTGGGGCACGGG GAGGCGGGAAAGGGATACAGCTTGCCCAGGCCGGTGGCAGGTTTTGCCGG GTACCGAGTCACGAAGGTG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18213:146..3314-

>mRNA_Ecto-sp13_S_contig18213.5640.1 ID=mRNA_Ecto-sp13_S_contig18213.5640.1|Name=mRNA_Ecto-sp13_S_contig18213.5640.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=498bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18213:146..3314- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACGTTGATGTCGATAAGTTCCAAGAGCGGGAGCTGTACGGGTTTGG
TCAGAACGCTTGCGGAGAGCTAGGGCTGGGAGACACGCTCGAGCGCCACA
CGCCTACCCTCTCGCACACCTCCCGCGGGAAGGACATCGTTGACGTCACT
GCGGGGAACGAGCTCACAGCCGTTCTCACCAACACCGGCGAAGTCTACAG
CTGTGGATACAACAGCGAGGGGCAATGTGGGATCGGGGCGATCGACGAAA
CGGTGCCAGAAACGGTTCCGTCGTTGACCAAGGTGACTCTTCGGGAGCCA
AGCTTTCAACCTGCCGGCCGTGTGTCTCTGGTCCACTCTGGTAACGGCTC
CGAGCATCTTGTGTTTGTGACGGAGGAGGGGGAACTCCAAACATGCGGCC
GCAACGACTCGGGGCAGCTGGGGCACGGGGAGGCGGGAAAGGGATACAGC
TTGCCCAGGCCGGTGGCAGGTTTTGCCGGGTACCGAGTCACGAAGGTG
back to top