mRNA_Ecto-sp13_S_contig1820.5634.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1820.5634.1
Unique NamemRNA_Ecto-sp13_S_contig1820.5634.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1820.5634.1 vs. uniprot
Match: D7FZS5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZS5_ECTSI)

HSP 1 Score: 269 bits (687), Expect = 3.590e-89
Identity = 127/155 (81.94%), Postives = 139/155 (89.68%), Query Frame = 1
Query:    1 HDGYWTSDRMCAQLPAAIAMFELTNGPHRQGVFIYDNSTGHNAYDSDALLAHKINLAPGGEKVAFRVFEDDNGTTVYPTFQLGDTLLTDEKIFLPKTEAQKKIKGRRFGTGLDKKKFPVGTKVTPESPLLGLNKGGEQMLKEMRLWRLDGEKPRG 465
            HDGYWTSDRMCAQLPAAIA FELT+GPHRQGV I+DNSTGHN YD DALLAHK++LAPGGEK A RVFEDDNG TV+PT QLG TLLTD+KIFLPKTEAQ+K KGR+FGTGLDKK++P GTK TP SPLLGLNKGGEQMLK M LWRLDGE+ +G
Sbjct:    7 HDGYWTSDRMCAQLPAAIATFELTHGPHRQGVSIFDNSTGHNTYDDDALLAHKMSLAPGGEKTALRVFEDDNGRTVHPTPQLGGTLLTDKKIFLPKTEAQEKTKGRKFGTGLDKKQYPFGTKATPGSPLLGLNKGGEQMLKGMGLWRLDGERAKG 161          
BLAST of mRNA_Ecto-sp13_S_contig1820.5634.1 vs. uniprot
Match: A0A6H5JJM4_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJM4_9PHAE)

HSP 1 Score: 288 bits (738), Expect = 5.060e-89
Identity = 135/155 (87.10%), Postives = 147/155 (94.84%), Query Frame = 1
Query:    1 HDGYWTSDRMCAQLPAAIAMFELTNGPHRQGVFIYDNSTGHNAYDSDALLAHKINLAPGGEKVAFRVFEDDNGTTVYPTFQLGDTLLTDEKIFLPKTEAQKKIKGRRFGTGLDKKKFPVGTKVTPESPLLGLNKGGEQMLKEMRLWRLDGEKPRG 465
            HDGYWTSDRMCAQLPAAIAMFEL+NGPHRQGVFI+DNSTGHNAYD DALLAHKI+LAPGGEK A RVFEDDNG TV+PTFQ+GDTLLTD+KIFLPKTEAQKK+KGR+FGTGLDKKK+PVGT+VT  SPLLGLNKGGEQMLKEM LWRLDGE+ +G
Sbjct:  507 HDGYWTSDRMCAQLPAAIAMFELSNGPHRQGVFIFDNSTGHNAYDDDALLAHKISLAPGGEKAALRVFEDDNGKTVHPTFQVGDTLLTDKKIFLPKTEAQKKMKGRKFGTGLDKKKYPVGTRVTSGSPLLGLNKGGEQMLKEMGLWRLDGERAKG 661          
BLAST of mRNA_Ecto-sp13_S_contig1820.5634.1 vs. uniprot
Match: A0A6H5K550_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K550_9PHAE)

HSP 1 Score: 271 bits (693), Expect = 2.450e-82
Identity = 129/154 (83.77%), Postives = 140/154 (90.91%), Query Frame = 1
Query:    4 DGYWTSDRMCAQLPAAIAMFELTNGPHRQGVFIYDNSTGHNAYDSDALLAHKINLAPGGEKVAFRVFEDDNGTTVYPTFQLGDTLLTDEKIFLPKTEAQKKIKGRRFGTGLDKKKFPVGTKVTPESPLLGLNKGGEQMLKEMRLWRLDGEKPRG 465
            DGYWTSDRMCAQLPAA+A FELTNGPHRQGVFI+DNSTGHNAYD DALLAHKI+LAPGGEK A RVFEDDNG  V+PTFQ GDTLLTD+KIFLPKT  QKKIKGR+ GTGLDKK++PVGTKVT  SPLLGL+KGGEQMLKEM LWRLDGE+ +G
Sbjct:  560 DGYWTSDRMCAQLPAALATFELTNGPHRQGVFIFDNSTGHNAYDDDALLAHKISLAPGGEKTALRVFEDDNGRMVHPTFQDGDTLLTDKKIFLPKTPEQKKIKGRKHGTGLDKKQYPVGTKVTHGSPLLGLSKGGEQMLKEMGLWRLDGERAKG 713          
BLAST of mRNA_Ecto-sp13_S_contig1820.5634.1 vs. uniprot
Match: A0A6H5JD27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD27_9PHAE)

HSP 1 Score: 256 bits (654), Expect = 6.230e-78
Identity = 125/152 (82.24%), Postives = 131/152 (86.18%), Query Frame = 1
Query:    1 HDGYWTSDRMCAQLPAAIAMFELTNGPHRQGVFIYDNSTGHNAYDSDALLAHKINLAPGGEKVAFRVFEDDNGTTVYPTFQLGDTLLTDEKIFLPKTEAQKKIKGRRFGTGLDKKKFPVGTKVTPESPLLGLNKGGEQMLKEMRLWRLDGEK 456
            HDGYWTSD MCAQLPA IAM ELT+GPHRQGVFI+DNSTGHN YD+DALLAH INLAPGGEKVA RVFED +G  VYPTFQLGDTLLTD KIFLPKTE QKK K R+ GT LDK KFPVGTKV   SPLLGLNKGGEQML+EM LWRL GEK
Sbjct:  374 HDGYWTSDDMCAQLPAIIAMAELTSGPHRQGVFIFDNSTGHNPYDADALLAHNINLAPGGEKVALRVFEDVDGKKVYPTFQLGDTLLTDRKIFLPKTEEQKKNKKRKSGTALDKDKFPVGTKVVLRSPLLGLNKGGEQMLREMGLWRLRGEK 525          
BLAST of mRNA_Ecto-sp13_S_contig1820.5634.1 vs. uniprot
Match: A0A6H5KE66_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE66_9PHAE)

HSP 1 Score: 194 bits (494), Expect = 2.000e-55
Identity = 100/155 (64.52%), Postives = 109/155 (70.32%), Query Frame = 1
Query:    1 HDGYWTSDRMCAQLPAAIAMFELTNGPHRQGVFIYDNSTGHNAYDSDALLAHKINLAPGGEKVAFRVFEDDNGTTVYPTFQLGDTLLTDEKIFLPKTEAQKKIKGRRFGTGLDKKKFPVGTKVTPESPLLGLNKGGEQMLKEMRLWRLDGEKPRG 465
            HD YWTSDRMCA+LPA IAM ELT+GPHRQ V I+DNSTGHNAY  DALLAHKIN+APGGEK A RVFEDDNG TV                       +KK K R+ GT LDKKKF VGTKV   SPLLG+NKG EQML+EM LWRL GE+  G
Sbjct:  366 HDRYWTSDRMCARLPAIIAMVELTSGPHRQDVLIFDNSTGHNAYGEDALLAHKINMAPGGEKGALRVFEDDNGNTV-----------------------EKKQKERKNGTALDKKKFSVGTKVVAGSPLLGVNKGAEQMLREMGLWRLGGERKEG 497          
BLAST of mRNA_Ecto-sp13_S_contig1820.5634.1 vs. uniprot
Match: A0A6H5KGB3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGB3_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 9.120e-34
Identity = 73/156 (46.79%), Postives = 97/156 (62.18%), Query Frame = 1
Query:    4 DGYWTSDRMCAQLPAAIAMFELTNGPHRQGVFIYDNSTGHNAYDSDALLAHKINLAPGGEKVAFRVFEDDNGTTVYPTFQLGDTLLTDEKIFLPKTEAQKKIK---GRRFGTGLDKKKFPVGTKV---TPESPLLGLNKGGEQMLKEMRLWRLDGE 453
            DGYW  +R+C QLPA  A FEL+  P RQ + ++DNSTGHNA+  DAL A  I L+ GGE+V    FE  NG T+Y TFQLGD L      F  KTE +K  K   G++ G       FP+GT +   TP   L+G+ KG +++L++M L++LDGE
Sbjct:  184 DGYWDCNRLCVQLPAIFAAFELSREPGRQMLMVFDNSTGHNAFSPDALRAQNIALSAGGEQVPPHSFEY-NGRTIYTTFQLGDKLRFKTAPFARKTEEEKTAKKRNGKKLGV------FPIGTVIRQGTPSEKLVGIAKGMKEILEDMELYKLDGE 332          
BLAST of mRNA_Ecto-sp13_S_contig1820.5634.1 vs. uniprot
Match: A0A6H5K659_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K659_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 2.140e-32
Identity = 76/167 (45.51%), Postives = 97/167 (58.08%), Query Frame = 1
Query:    4 DGYWTSDRMCAQLPAAIAMFELTNGPHRQGVFIYDNSTGHNAYDSDALLAHKINLAPGGEKVAFRVFEDDNGTTVYPTFQLGDTLLTDEKIFLPKT---------EAQKK---IKGRRFGTGLDKKKFPVGTKVTPE---SPLLGLNKGGEQMLKEMRLWRLDGEKP 459
            DGYWT+DRMC Q+P  IA+ ELT+ PHR  V ++DNSTGH AY+  AL+A  I   PGG +V    F DD G  V+ TF+ GDT+L D  ++  KT         EA KK    K  +FG+ L    F  G KV      S L+G  KGG+Q+L EM LW + G+ P
Sbjct:  531 DGYWTNDRMCKQIPGLIAIHELTSEPHRPMVMVFDNSTGHAAYEEGALVASHIQKKPGGGQVILDDFLDDQGNLVHATFREGDTVLFDTHVYAAKTPEQLEEEEREAAKKDPKYKRPKFGSSLGD--FKAGEKVRTTGRTSGLIGQAKGGQQLLMEMGLWDVPGQAP 695          
BLAST of mRNA_Ecto-sp13_S_contig1820.5634.1 vs. uniprot
Match: A0A6H5JT56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT56_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 4.840e-32
Identity = 73/165 (44.24%), Postives = 94/165 (56.97%), Query Frame = 1
Query:    4 DGYWTSDRMCAQLPAAIAMFELTNGPHRQGVFIYDNSTGHNAYDSDALLAHKINLAPGGEKVAFRVFEDDNGTTVYPTFQLGDTLLTDEKIFLPKTE----------AQKKIKGRRFGTGLDKKKFPVGTKVTPE---SPLLGLNKGGEQMLKEMRLWRLDGEKP 459
            DGYWT+DRMC Q+P  IA+ ELT+ PHR  V ++DNSTGH AY+  AL+A  I   PGG +V    F DD G  V+ TF+ GDT+L D  ++  KT           A+K  K +R   G     F  G KV      S L+G  KGG+Q+L EM LW + G+ P
Sbjct:   98 DGYWTNDRMCKQIPGLIAIHELTSEPHRPMVMVFDNSTGHAAYEEGALVASHIQKKPGGGQVILDDFLDDQGNLVHATFREGDTVLFDTHVYAAKTPEQLEEEEREAAKKDPKYKRPKIGSSLGDFNAGEKVRTTGRTSGLIGQAKGGQQLLMEMGLWDVPGQAP 262          
BLAST of mRNA_Ecto-sp13_S_contig1820.5634.1 vs. uniprot
Match: A0A6H5JRU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRU6_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 8.950e-32
Identity = 76/167 (45.51%), Postives = 97/167 (58.08%), Query Frame = 1
Query:    4 DGYWTSDRMCAQLPAAIAMFELTNGPHRQGVFIYDNSTGHNAYDSDALLAHKINLAPGGEKVAFRVFEDDNGTTVYPTFQLGDTLLTDEKIFLPKT---------EAQKK---IKGRRFGTGLDKKKFPVGTKVTPE---SPLLGLNKGGEQMLKEMRLWRLDGEKP 459
            DGYWT+DRMC Q+P  IA+ ELT+ PHR  V ++DNSTGH AY+  AL+A  I   PGG +V    F DD G  V+ TF+ GDT+L D  ++  KT         EA KK    K  +FG+ L    F  G KV      S L+G  KGG+Q+L EM LW + G+ P
Sbjct:  271 DGYWTNDRMCKQIPGLIAIHELTSEPHRPMVMVFDNSTGHAAYEEGALVASHIQKKPGGGQVILD-FLDDQGNLVHATFREGDTVLFDTHVYAAKTPEQLEEEEREAAKKDPKYKRPKFGSSLGD--FKAGEKVRTTGRTSGLIGQAKGGQQLLMEMGLWDVPGQAP 434          
BLAST of mRNA_Ecto-sp13_S_contig1820.5634.1 vs. uniprot
Match: A0A6H5L669_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L669_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 8.260e-31
Identity = 72/162 (44.44%), Postives = 94/162 (58.02%), Query Frame = 1
Query:    4 DGYWTSDRMCAQLPAAIAMFELTNGPHRQGVFIYDNSTGHNAYDSDALLAHKINLAPGGEKVAFRVFEDDNGTTVYPTFQLGDTLLTDEKIFLPKTE----AQKKI------------KGRRFGTGLDKKKFPVGTKVT-PESPLLGLNKGGEQMLKEMRLW 438
            DGYW   RM  Q+P  IA+ ELT+ PHRQ V ++DNSTGH+A+ + AL+   + L PGG + A R FEDD G  V+ TF++GD L     +F PKTE    A+KK             K ++ G  L K K     K T P + L+GL KGG+Q+L EM LW
Sbjct:  367 DGYWNCARMLEQIPGLIAIHELTSEPHRQLVMVFDNSTGHSAFGAGALVGEHVALRPGGAQGALRNFEDDEGNPVHTTFRVGDKLRFTTNVFAPKTEEELEAEKKAAEEAEEKGLPVKKSKKNGKNLGKFKKDDEVKATGPTAVLIGLPKGGKQLLMEMGLW 528          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1820.5634.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZS5_ECTSI3.590e-8981.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JJM4_9PHAE5.060e-8987.10Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K550_9PHAE2.450e-8283.77Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JD27_9PHAE6.230e-7882.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KE66_9PHAE2.000e-5564.52Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KGB3_9PHAE9.120e-3446.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K659_9PHAE2.140e-3245.51Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JT56_9PHAE4.840e-3244.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRU6_9PHAE8.950e-3245.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L669_9PHAE8.260e-3144.44Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1820contigEcto-sp13_S_contig1820:3813..4393 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score245.4
Seed ortholog evalue1.7e-62
Seed eggNOG ortholog2880.D7FZS5
Model size581
Hectar predicted targeting categoryother localisation
Exons1
EggNOG OGs2D16T@1,2SGXK@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-00_004900.1
Cds size444
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462939.1222057-UTR-Ecto-sp13_S_contig1820:3812..39221681462939.1222057-UTR-Ecto-sp13_S_contig1820:3812..3922Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1820 3813..3922 -
1681462939.1533835-UTR-Ecto-sp13_S_contig1820:4366..43931681462939.1533835-UTR-Ecto-sp13_S_contig1820:4366..4393Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1820 4367..4393 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462939.1412792-CDS-Ecto-sp13_S_contig1820:3922..43661681462939.1412792-CDS-Ecto-sp13_S_contig1820:3922..4366Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1820 3923..4366 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1820.5634.1prot_Ecto-sp13_S_contig1820.5634.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1820 3923..4366 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1820.5634.1

>prot_Ecto-sp13_S_contig1820.5634.1 ID=prot_Ecto-sp13_S_contig1820.5634.1|Name=mRNA_Ecto-sp13_S_contig1820.5634.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=148bp
MCAQLPAAIAMFELTNGPHRQGVFIYDNSTGHNAYDSDALLAHKINLAPG
GEKVAFRVFEDDNGTTVYPTFQLGDTLLTDEKIFLPKTEAQKKIKGRRFG
TGLDKKKFPVGTKVTPESPLLGLNKGGEQMLKEMRLWRLDGEKPRGP*
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mRNA from alignment at Ecto-sp13_S_contig1820:3813..4393-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1820.5634.1 ID=mRNA_Ecto-sp13_S_contig1820.5634.1|Name=mRNA_Ecto-sp13_S_contig1820.5634.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=581bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1820:3813..4393- (Ectocarpus species13 EcNAP12_S_4_19m)
CACGATGGCTACTGGACGAGCGATCGCATGTGCGCCCAACTGCCGGCGGC TATCGCCATGTTCGAGCTGACGAATGGGCCGCACCGGCAGGGTGTCTTCA TCTACGACAACTCCACCGGCCACAACGCGTACGACAGCGACGCGTTGCTG GCCCACAAGATCAACTTGGCGCCGGGTGGGGAGAAGGTGGCGTTCAGGGT GTTCGAGGATGACAACGGAACGACGGTATACCCTACATTCCAGCTAGGTG ACACCTTGCTTACCGACGAGAAGATTTTCTTACCGAAGACAGAGGCCCAA AAGAAAATCAAGGGGCGCAGGTTTGGAACGGGGCTCGATAAAAAGAAGTT TCCCGTCGGAACCAAAGTCACGCCTGAATCGCCGCTGCTTGGGCTCAACA AAGGAGGTGAGCAGATGCTCAAGGAGATGAGGTTGTGGCGGCTTGACGGC GAAAAGCCAAGGGGCCCGTAAAGTGTTGCAGCAAGTGCAAGGCCGACAAC GCGGCATCACGGCAAGCGATCGCCGCATTCAACAAAGGAGGGGAGGGGCG GGAGAGAGTTCTAGAACAAAGGAGGGGAGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1820:3813..4393-

>mRNA_Ecto-sp13_S_contig1820.5634.1 ID=mRNA_Ecto-sp13_S_contig1820.5634.1|Name=mRNA_Ecto-sp13_S_contig1820.5634.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=444bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1820:3813..4393- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGCGCCCAACTGCCGGCGGCTATCGCCATGTTCGAGCTGACGAATGG
GCCGCACCGGCAGGGTGTCTTCATCTACGACAACTCCACCGGCCACAACG
CGTACGACAGCGACGCGTTGCTGGCCCACAAGATCAACTTGGCGCCGGGT
GGGGAGAAGGTGGCGTTCAGGGTGTTCGAGGATGACAACGGAACGACGGT
ATACCCTACATTCCAGCTAGGTGACACCTTGCTTACCGACGAGAAGATTT
TCTTACCGAAGACAGAGGCCCAAAAGAAAATCAAGGGGCGCAGGTTTGGA
ACGGGGCTCGATAAAAAGAAGTTTCCCGTCGGAACCAAAGTCACGCCTGA
ATCGCCGCTGCTTGGGCTCAACAAAGGAGGTGAGCAGATGCTCAAGGAGA
TGAGGTTGTGGCGGCTTGACGGCGAAAAGCCAAGGGGCCCGTAA
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