mRNA_Ecto-sp13_S_contig18150.5605.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18150.5605.1
Unique NamemRNA_Ecto-sp13_S_contig18150.5605.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig18150.5605.1 vs. uniprot
Match: A0A6H5KWE3_9PHAE (GCFC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWE3_9PHAE)

HSP 1 Score: 420 bits (1080), Expect = 3.700e-141
Identity = 225/233 (96.57%), Postives = 226/233 (97.00%), Query Frame = 1
Query:    1 SKKKGLFPEIRRKLEAVLVHWNDVFDSTVYVILSPWKHVFDSRSMEALLSKFVAPKLVAGLRASLVINPANQDMAPFDMLMMWADLLPPLYMTSILDVEFFPKWLTVLHRWLSETADYAEVALWYQGWKDRFPESLRSDPRVMAQFSAALSLMDQVMQDHQRLGVPLPAGASEQMDYMRVVEHRRMEAATARQRDNAXXXXXXXXXXXEEARSRGPTTASFKDVVEGYAAQNG 699
            S+  GLFPEIRRKLEAVLVHWNDVFDSTVYVILSPWKHVFDSRSMEALLSKFVAPKLVAGLRASLVINPANQDMAPFDMLMMWADLLPPLYMTSILDVEFFPKWLTVLHRWLSETADYAEVALWYQGWKDRFPESLRSDPRVMAQFSAALSLMDQVMQDHQRLGVPLPAGASEQMDYMRVVEHRRMEAATARQ    XXXXXXXXXXXEEARSRGPTTASFKDVVEGYAA NG
Sbjct:  356 SRLAGLFPEIRRKLEAVLVHWNDVFDSTVYVILSPWKHVFDSRSMEALLSKFVAPKLVAGLRASLVINPANQDMAPFDMLMMWADLLPPLYMTSILDVEFFPKWLTVLHRWLSETADYAEVALWYQGWKDRFPESLRSDPRVMAQFSAALSLMDQVMQDHQRLGVPLPAGASEQMDYMRVVEHRRMEAATARQXXXXXXXXXXXXXXXEEARSRGPTTASFKDVVEGYAAHNG 588          
BLAST of mRNA_Ecto-sp13_S_contig18150.5605.1 vs. uniprot
Match: D8LQD4_ECTSI (G-patch domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQD4_ECTSI)

HSP 1 Score: 424 bits (1090), Expect = 4.400e-138
Identity = 230/253 (90.91%), Postives = 234/253 (92.49%), Query Frame = 1
Query:    1 SKKKGLFPEIRRKLEAVLVHWNDVFDSTVYVILSPWKHVFDSRSMEALLSKFVAPKLVAGLRASLVINPANQDMAPFDMLMMWADLLPPLYMTSILDVEFFPKWLTVLHRWLSETADYAEVALWYQGWKDRFPESLRSDPRVMAQFSAALSLMDQVMQDHQRLGVPLPAGASEQMDYMRVVEHRRMEAATARQRDNAXXXXXXXXXXXEEARSRGPTTASFKDVVEGYAAQNG---------------TKVGC 714
            S+  GLFPEIRRKLEAVLVHWNDVFDSTVYVILSPWK+VFDSRSMEALLSKFVAPKLVAGLRASLVINPANQDMAPFDMLMMWADLLPPLYMTSILDVEFFPKWLTVLHRWLSETADYAEVALWYQGWKDRFPE LRSDPRVMAQFSAALSLMDQVMQDHQRLGVPLPAGASEQMDYMRVVEHRRMEAAT RQR+NAXXXXXXXXXXXE+ARSRGPTTASFKDVVEGYAAQNG               TKVGC
Sbjct:  786 SRLAGLFPEIRRKLEAVLVHWNDVFDSTVYVILSPWKNVFDSRSMEALLSKFVAPKLVAGLRASLVINPANQDMAPFDMLMMWADLLPPLYMTSILDVEFFPKWLTVLHRWLSETADYAEVALWYQGWKDRFPERLRSDPRVMAQFSAALSLMDQVMQDHQRLGVPLPAGASEQMDYMRVVEHRRMEAATVRQRENAXXXXXXXXXXXEQARSRGPTTASFKDVVEGYAAQNGVMFVPKPGRQHEGKQTKVGC 1038          
BLAST of mRNA_Ecto-sp13_S_contig18150.5605.1 vs. uniprot
Match: A0A2V0PC38_9CHLO (G-patch domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PC38_9CHLO)

HSP 1 Score: 144 bits (363), Expect = 2.430e-35
Identity = 75/168 (44.64%), Postives = 101/168 (60.12%), Query Frame = 1
Query:   13 GLFPEIRRKLEAVLVHWNDVFDSTVYVILSPWKHVFDSRSMEALLSKFVAPKLVAGLRASLVINPANQDMAPFDMLMMWADLLPPLYMTSILDVEFFPKWLTVLHRWLSETADYAEVALWYQGWKDRFPESLRSDPRVMAQFSAALSLMDQVMQDHQRLGVPLPAGAS 516
              +P IR +L A L  W+   DS    +L+PW+  FD+   +ALL + VAPKL   L+  LVINPA QD++PF+ +M W  LL    M ++L+  FFPKWL VL  WL+ + DY EV  WY  WK  FP+SL   PRV + F+AAL++M+         G PLPA A+
Sbjct:  694 AFYPTIRHRLSAALTAWHPADDSA-RALLAPWRRAFDAGDWDALLGRSVAPKLALALQ-ELVINPAAQDLSPFNWVMAWEGLLAGQQMAALLEQGFFPKWLAVLRHWLTASPDYDEVTRWYLAWKGLFPQSLLDQPRVRSNFNAALNMMNAAAD-----GAPLPAAAA 854          
BLAST of mRNA_Ecto-sp13_S_contig18150.5605.1 vs. uniprot
Match: A0A7S3QTZ3_DUNTE (Hypothetical protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3QTZ3_DUNTE)

HSP 1 Score: 141 bits (355), Expect = 2.700e-34
Identity = 72/149 (48.32%), Postives = 93/149 (62.42%), Query Frame = 1
Query:   16 LFPEIRRKLEAVLVHWNDVFDSTVYVILSPWKHVFDSRSMEALLSKFVAPKLVAGLRASLVINPANQDMAPFDMLMMWADLLPPLYMTSILDVEFFPKWLTVLHRWLSETADYAEVALWYQGWKDRFPESLRSDPRVMAQFSAALSLMD 462
            L+P IR KL   L  W+   DS+  V+L PW  VFD+   +ALL + + PKL   L+A   +NP  QDMAPF  +M W ++LP  +M ++LDV FFPKW  VLH WLS T +Y EV  WY GWK  FP  L    RV  QF+AAL++M+
Sbjct:  590 LYPVIRHKLGVALQAWHPS-DSSALVLLRPWHRVFDASEWDALLLRCIVPKLAMALQA-FAVNPVAQDMAPFQWVMGWNEVLPHHHMAALLDVGFFPKWHQVLHYWLSHTPNYDEVTAWYLGWKAAFPPGLLDHERVRRQFNAALNMMN 736          
BLAST of mRNA_Ecto-sp13_S_contig18150.5605.1 vs. uniprot
Match: A0A5J4XK29_9CHLO (Tuftelin-interacting 11-like n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XK29_9CHLO)

HSP 1 Score: 137 bits (345), Expect = 5.820e-33
Identity = 66/153 (43.14%), Postives = 93/153 (60.78%), Query Frame = 1
Query:   16 LFPEIRRKLEAVLVHWNDVFDSTVYVILSPWKHVFDSRSMEALLSKFVAPKLVAGLRASLVINPANQDMAPFDMLMMWADLLPPLYMTSILDVEFFPKWLTVLHRWLSETADYAEVALWYQGWKDRFPESLRSDPRVMAQFSAALSLMDQVMQ 474
            L+P IR KL   L  W+   D +   +LSPW  VFD++  +AL+ + + PKL   L+  LVINP  QD+APF  L +W  +LP  +M ++L+  FFP W  VLH WLS   D+ EV  WY GWK  FP+ L    R+ AQF++AL+ M+  ++
Sbjct:  587 LYPGIRFKLSTALQQWHPS-DQSALALLSPWHTVFDAKDWDALVMRSIVPKLAWALQDVLVINPLQQDLAPFHWLTVWHAVLPQHHMVNLLEFRFFPAWHRVLHHWLSSQPDFEEVTRWYLGWKSLFPQDLADHERIRAQFTSALNSMNHAVE 738          
BLAST of mRNA_Ecto-sp13_S_contig18150.5605.1 vs. uniprot
Match: UPI000A1C4930 (tuftelin-interacting protein 11 n=1 Tax=Boleophthalmus pectinirostris TaxID=150288 RepID=UPI000A1C4930)

HSP 1 Score: 135 bits (341), Expect = 1.940e-32
Identity = 84/236 (35.59%), Postives = 130/236 (55.08%), Query Frame = 1
Query:    1 SKKKGLFPEIRRKLEAVLVHWNDVFDSTVYVILSPWKHVFDSRSMEALLSKFVAPKLVAGLRASLVINPANQDMAPFDMLMMWADLLPPLYMTSILDVEFFPKWLTVLHRWLSETADYAEVALWYQGWKDRFPESLRSDPRVMAQFSAALSLMDQVMQDHQRLGVPLPAGASEQMDYMRVVEHRR-MEAATARQRDNAXXXXXXXXXXXEEARSRGPTTA---SFKDVVEGYAAQN 696
            S+ + L+P IR KL   L  W+   D++  +IL PWK VF   + EA + K + PKL   L   LVINP  Q M PF+ +++W  +L P  + S+LD  FFPKWL VL  WLS + +Y E+  WY GWK  F ++L + P +  +F+ AL +M++ +     +GV +  GA E + Y+   E R+  +    ++R +A           E   +RG +T+   +FKD+V+  A +N
Sbjct:  557 SRLEPLYPPIRSKLSNALQRWHPS-DASARLILQPWKDVFTPGAWEAFMVKNIIPKLALCLE-ELVINPHQQQMDPFNWVIVWEGMLSPSSLVSLLDKNFFPKWLQVLCSWLSNSPNYEEITKWYLGWKGMFSDALLTQPPIKEKFNEALDIMNRAVSSG--VGVYMQPGARENIAYLTQTERRKDFQYEALQERRDA-----------ESVATRGFSTSGPTNFKDLVQAKAEEN 777          
BLAST of mRNA_Ecto-sp13_S_contig18150.5605.1 vs. uniprot
Match: A0A3P8W6H2_CYNSE (Tuftelin-interacting protein 11 n=1 Tax=Cynoglossus semilaevis TaxID=244447 RepID=A0A3P8W6H2_CYNSE)

HSP 1 Score: 134 bits (336), Expect = 9.060e-32
Identity = 87/242 (35.95%), Postives = 123/242 (50.83%), Query Frame = 1
Query:    1 SKKKGLFPEIRRKLEAVLVHWNDVFDSTVYVILSPWKHVFDSRSMEALLSKFVAPKLVAGLRASLVINPANQDMAPFDMLMMWADLLPPLYMTSILDVEFFPKWLTVLHRWLSETADYAEVALWYQGWKDRFPESLRSDPRVMAQFSAALSLMDQVMQDHQRLGVPLPAGASEQMDYMRVVE----------HRRMEAATARQRDNAXXXXXXXXXXXEEARSRGPTTASFKDVVEGYAAQN 696
            S+ + L+P IR KL   L  W+   DS+  +IL PWK VF   + EA + K + PKL   L   LVINP  Q M PF  +M W  +L P  + S+LD  FFPKWL VL  WLS   +Y E+  WY GWK  F ++L + P +  +F+ AL +M++ +     +G  +  GA E + Y+   E          H R EA +  QR  +               S GPT  +FKD+++  A +N
Sbjct:  562 SRLEPLYPPIRSKLSNALQRWHPS-DSSARLILQPWKDVFTPGAWEAFMVKNIIPKLALCLE-ELVINPHQQQMEPFHWVMDWEGMLSPSSLVSLLDKNFFPKWLQVLCSWLSNNPNYEEITKWYLGWKSMFSDALLAQPVIKEEFNEALDIMNRAVST--AMGGYMQPGARENIAYLTQTERRKDFQYEAMHERREAESVAQRGVS---------------SSGPT--NFKDLIQTKAEEN 782          
BLAST of mRNA_Ecto-sp13_S_contig18150.5605.1 vs. uniprot
Match: A0A843U0H8_COLES (G-patch domain-containing protein n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843U0H8_COLES)

HSP 1 Score: 134 bits (336), Expect = 9.250e-32
Identity = 81/229 (35.37%), Postives = 122/229 (53.28%), Query Frame = 1
Query:   16 LFPEIRRKLEAVLVHWNDVFDSTVYVILSPWKHVFDSRSMEALLSKFVAPKLVAGLRASLVINPANQDMAPFDMLMMWADLLPPLYMTSILDVEFFPKWLTVLHRWLSETADYAEVALWYQGWKDRFPESLRSDPRVMAQFSAALSLMDQVMQDHQRLGVPLPAGASEQMDYMRVVEHRRMEAATARQRDNAXXXXXXXXXXXEEARSRGPTTA-SFKDVVEGYAAQNG 699
            L+  I  KL  VL  W+   D++ + ILSPWK VFD+ S   L+ + + PKL+  L+    INPANQ +  F+ +M WA ++P  YM ++L+ EFF KWL  L+ WL    ++ EV  W+ GWK  FP+ L ++ R+  Q +  L +M+Q ++    + V  P GA E + Y+RV E R+ EA        +               S G +   S KD +E +A +NG
Sbjct:  588 LYSTITIKLGIVLRAWH-ASDASAHAILSPWKDVFDAGSWNRLICERIVPKLMEALKG-FEINPANQKLDQFNWVMTWASVIPIDYMATLLEAEFFTKWLQALYIWLCSNPNFNEVTEWFLGWKGLFPQELLANERIRRQLNRGLDMMNQAVEG---MEVVQP-GARENVSYLRVTEKRQFEAQQQAAASASYQHISGVFGNGAHVDSTGTSAQISLKDHIEAFAVENG 810          
BLAST of mRNA_Ecto-sp13_S_contig18150.5605.1 vs. uniprot
Match: A0A0K9NQ04_ZOSMR (Putative Tuftelin interacting protein n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9NQ04_ZOSMR)

HSP 1 Score: 134 bits (336), Expect = 9.350e-32
Identity = 82/233 (35.19%), Postives = 131/233 (56.22%), Query Frame = 1
Query:   16 LFPEIRRKLEAVLVHWNDVFDSTVYVILSPWKHVFDSRSMEALLSKFVAPKLVAGLRASLVINPANQDMAPFDMLMMWADLLPPLYMTSILDVEFFPKWLTVLHRWLSETADYAEVALWYQGWKDRFPESLRSDPRVMAQFSAALSLMDQVMQDHQRLGVPLPAGASEQMDYMRVVEHRRMEAATARQRDNAXXXXXXXXXXXEEARSRGPTTA-----SFKDVVEGYAAQNG 699
            L+  IR KL  VL  W+   D++ Y++LSPWK VFD+ + E L+ +++ PKL+  L+    INP NQ++  F+ +M WA ++P  +M ++L+V FF KW  V++ WLS   ++ EV  W+ GWK  FP  L ++ R+  Q +A L +M+Q + D  ++  P   GA E ++++RV E R+ EA   +Q+  A            E   R   +      + K+ VE YA +NG
Sbjct:  610 LYHTIRFKLGNVLHAWH-AHDASAYIMLSPWKDVFDAGNWEQLIVRYIVPKLMIALQ-EFQINPNNQNLDHFNWVMRWASVIPIHHMVTMLEVGFFTKWKQVVYTWLSSNPNFNEVMQWFLGWKSLFPPELLANERIRLQLNAGLDMMNQAV-DGMQIVQP---GARENINFLRVSEKRQFEA---QQQQAAVRASYHNSSVISENGIRMDVSTDIPEMTLKETVEAYAVENG 833          
BLAST of mRNA_Ecto-sp13_S_contig18150.5605.1 vs. uniprot
Match: A0A2L2YLM0_PARTP (Tuftelin-interacting protein 11 (Fragment) n=2 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=A0A2L2YLM0_PARTP)

HSP 1 Score: 128 bits (321), Expect = 2.530e-31
Identity = 73/177 (41.24%), Postives = 102/177 (57.63%), Query Frame = 1
Query:   16 LFPEIRRKLEAVLVHWNDVFDSTVYVILSPWKHVFDSRSMEALLSKFVAPKLVAGLRASLVINPANQDMAPFDMLMMWADLLPPLYMTSILDVEFFPKWLTVLHRWLSETADYAEVALWYQGWKDRFPESLRSDPRVMAQFSAALSLMDQVMQDHQRLGVPLPAGASEQMDYMRVVE 546
            L+  IR KL + LV+W+   D +  +IL PWK VF    MEA +   + PKLVA ++ + VINP  Q +  ++ +M W D++P   M +IL+  FFPKWL VL+ WL+ + +Y EV  WY GWK   P SL   P +  QF  AL +M++ +   Q L    P GA E M Y+  VE
Sbjct:   72 LYAPIRHKLASALVNWHPS-DCSAKLILEPWKGVFSQGVMEAFVVTNIVPKLVAVMQ-TYVINPHQQHLDVWNWVMAWFDMMPEPCMVTILEKNFFPKWLQVLYTWLTHSPNYEEVTKWYTGWKSMLPPSLHHHPIIKEQFRQALDIMNRAVSAPQGLLGQQP-GAKESMAYLTNVE 245          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18150.5605.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KWE3_9PHAE3.700e-14196.57GCFC domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LQD4_ECTSI4.400e-13890.91G-patch domain-containing protein n=1 Tax=Ectocarp... [more]
A0A2V0PC38_9CHLO2.430e-3544.64G-patch domain-containing protein n=1 Tax=Raphidoc... [more]
A0A7S3QTZ3_DUNTE2.700e-3448.32Hypothetical protein n=1 Tax=Dunaliella tertiolect... [more]
A0A5J4XK29_9CHLO5.820e-3343.14Tuftelin-interacting 11-like n=1 Tax=Trebouxia sp.... [more]
UPI000A1C49301.940e-3235.59tuftelin-interacting protein 11 n=1 Tax=Boleophtha... [more]
A0A3P8W6H2_CYNSE9.060e-3235.95Tuftelin-interacting protein 11 n=1 Tax=Cynoglossu... [more]
A0A843U0H8_COLES9.250e-3235.37G-patch domain-containing protein n=1 Tax=Colocasi... [more]
A0A0K9NQ04_ZOSMR9.350e-3235.19Putative Tuftelin interacting protein n=1 Tax=Zost... [more]
A0A2L2YLM0_PARTP2.530e-3141.24Tuftelin-interacting protein 11 (Fragment) n=2 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18150contigEcto-sp13_S_contig18150:389..3069 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score345.5
Seed ortholog evalue1.7e-92
Seed eggNOG ortholog2880.D8LQD4
Preferred nameTFIP11
Model size811
KEGG koko:K13103
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000375,GO:0000377,GO:0000390,GO:0000398,GO:0000723,GO:0000781,GO:0000784,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005694,GO:0005730,GO:0005737,GO:0006139,GO:0006259,GO:0006282,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008150,GO:0008152,GO:0008380,GO:0009892,GO:0009987,GO:0010467,GO:0010605,GO:0016043,GO:0016070,GO:0016071,GO:0016233,GO:0016604,GO:0016607,GO:0019219,GO:0019222,GO:0022411,GO:0030154,GO:0030198,GO:0031012,GO:0031323,GO:0031324,GO:0031333,GO:0031848,GO:0031974,GO:0031981,GO:0032091,GO:0032200,GO:0032502,GO:0032984,GO:0032988,GO:0032991,GO:0033554,GO:0034641,GO:0042592,GO:0042752,GO:0043021,GO:0043062,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043247,GO:0043254,GO:0043393,GO:0043933,GO:0044087,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044421,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044877,GO:0045738,GO:0045934,GO:0046483,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051098,GO:0051100,GO:0051105,GO:0051107,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051276,GO:0051340,GO:0051352,GO:0051716,GO:0060249,GO:0060255,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070990,GO:0071008,GO:0071013,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0098687,GO:1901360,GO:1902494,GO:1904875,GO:1904876,GO:1990446,GO:1990904,GO:2000779,GO:2000780,GO:2001020,GO:2001021,GO:2001032,GO:2001033
Exons5
EggNOG free text desc.spliceosomal complex disassembly
EggNOG OGsKOG2184@1,KOG2184@2759
Cds size615
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03041
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18150.5605.1prot_Ecto-sp13_S_contig18150.5605.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18150 521..3005 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462936.9700944-UTR-Ecto-sp13_S_contig18150:388..5201681462936.9700944-UTR-Ecto-sp13_S_contig18150:388..520Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18150 389..520 +
1681462937.036342-UTR-Ecto-sp13_S_contig18150:3005..30691681462937.036342-UTR-Ecto-sp13_S_contig18150:3005..3069Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18150 3006..3069 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462936.9861474-CDS-Ecto-sp13_S_contig18150:520..6041681462936.9861474-CDS-Ecto-sp13_S_contig18150:520..604Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18150 521..604 +
1681462936.9964685-CDS-Ecto-sp13_S_contig18150:1199..13431681462936.9964685-CDS-Ecto-sp13_S_contig18150:1199..1343Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18150 1200..1343 +
1681462937.006667-CDS-Ecto-sp13_S_contig18150:1920..20251681462937.006667-CDS-Ecto-sp13_S_contig18150:1920..2025Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18150 1921..2025 +
1681462937.0177972-CDS-Ecto-sp13_S_contig18150:2600..28341681462937.0177972-CDS-Ecto-sp13_S_contig18150:2600..2834Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18150 2601..2834 +
1681462937.0255735-CDS-Ecto-sp13_S_contig18150:2957..30051681462937.0255735-CDS-Ecto-sp13_S_contig18150:2957..3005Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18150 2958..3005 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18150.5605.1

>prot_Ecto-sp13_S_contig18150.5605.1 ID=prot_Ecto-sp13_S_contig18150.5605.1|Name=mRNA_Ecto-sp13_S_contig18150.5605.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=205bp
MEALLSKFVAPKLVAGLRASLVINPANQDMAPFDMLMMWADLLPPLYMTS
ILDVEFFPKWLTVLHRWLSETADYAEVALWYQGWKDRFPESLRSDPRVMA
QFSAALSLMDQVMQDHQRLGVPLPAGASEQMDYMRVVEHRRMEAATARQR
DNASAAAAAAAAAAEEARSRGPTTASFKDVVEGYAAQNGTKVGCWSLRVR
HITC*
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mRNA from alignment at Ecto-sp13_S_contig18150:389..3069+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18150.5605.1 ID=mRNA_Ecto-sp13_S_contig18150.5605.1|Name=mRNA_Ecto-sp13_S_contig18150.5605.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2681bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18150:389..3069+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCGAAAAAAAAAGGCCTGTTCCCCGAGATCCGTCGAAAACTGGAGGCCGT TCTGGTGCACTGGAACGACGTCTTCGACTCCACGGTGTACGTTATCCTGT CCCCTTGGAAGCATGTTTTCGACTCCCGCAGCATGGAGGCTCTGTTGAGC AAGTTCGTCGCCCCCAAGCTGGTGGCCGGCCTGAGGGCTTCGCTCGTCAT CAACCCCGCCAACCAGGTACGGTGTCCTGTTGCTGTTTTGGTGGTTTTTG TTGTTGTTGGTGGCGTCGTCGCTTGTGTTGCTGTAGGCGGTGGTGGCGAT GATAAATGACGGTGTGATGGTATGGTAGCATACCCTTGTTGTTTTGGTTG CGGTGGTGGTGCTGCTGCTGTAGGCGGGTAATGATAATGGCGGTTGTGGC GGTGATGGTCTGTCCTTGCTGTTGTTGTTGTTGTTGTTGTTGTTGGTGGT GGTGCTGCTGCTGCTGCTGCTGCTGAAGGCGGTATCGGTGATGATGATGG GGAATGTGACGGTGATGGTCCGTCCTTGTTTTTGGTGGTGGTGGTGGTGG TGGTGGTGGTACTGCTGCTGAAGGCGGTAGTGGTGATGATGATGATGGTT GGCTGGTGTCTTGTTGAACCAGCTTGAGCAGCCCTGCCACCCTCCCAACC CGTCTCTTCTGCCTCGCGCCACGTTTCCTTTACTTCCAACATGCCTCAGC TCTACACGTACGTATTTTCACATTTCCGAACAACCTCCCTCTTGCCTTGC CTTCCCTCTGGCCCCGCCCCGCTCTCGCTCTGATTCCTGTCTACTCGTGC TGTATGCATAGGACATGGCTCCCTTCGACATGCTCATGATGTGGGCAGAC CTTCTACCGCCGTTGTACATGACTAGCATCCTCGACGTGGAGTTTTTCCC CAAGTGGCTCACGGTTTTGCACCGCTGGCTCAGCGAAACAGCGGACTATG CCGAGGTTAGCGGTTTGTCGGTTCGACGTTCCCATCAAAGATTTTTTTTT GTGTTCGACGACAGAGATGGGTCTTCACCCGAACTAGGTGTTGTTCCTCG AGCGACTTGCGTTCGACGATGAAATTAATTATATTCTGAATATTTCTACT GTAGATCAGTCCAATATCTGCCCACCCGGGTCAGCCGGTACGTACGGGTG TATGTCTGCTTGCAAGCTATGCCGTGGCCACTCAACTTTTCTTCGCACAC CATACTACACAAGTCGTGCATTTTTTTCCATTGGCGCAACTCTCTCCGTA TCTTCCTGGTGTAACGACAGCAGTCGTGCTAATGTTATATTGTTGTTGTG GCTGTCTATCGCTTTCACCTTGGCAGCCATTCTGACCCCGTTCCAATACC TCCTCTCCCCTCGTGCGTTCCAAGGAAAAGGTGGATACTCCTATTCCGTG GTTGATCCGTGGTCGTAAACTCTCCAGGAGTTCCCCCTTGTTCAGGATAG TTCAAAAATACTTTGAGAAAGATCGAAAATTCTATAGTATCGTGTCGGTG TTCGTTTCTCCACCTCGGGCTTCCATCGTTAGGTTGCTTTATGGTACCAA GGCTGGAAGGATCGTTTCCCGGAGAGCTTGCGATCGGACCCTAGGGTGAT GGCCCAGTTCAGCGCGGCCCTGAGCCTCATGGACCAGGTAAGCTACCTCA CTGCAGAACCGGAGGACCGGGGGGAAATCTTGTATGGTAGGGACTTGTCA ACTACCGGATAGAAGCGCTTCTTTGATTGGCCGACCGTTTTGATCTTTGC TTGGCCCCCCGTTTGCTTTCCAAACTCAAAAGACTGAAAATGGAGGTGTA CTGTTGAGGGTAATTGTGGCGATGTTGGGGTGGTTGTGGCGATCTTTCCT GTTGCACCTTGCATTCCGTTCGTACGTGGCCACGATGCTCCCGCCGGGGC CTCGGTGGTGCAGACGGAGTATGGCTTTGTCTTCCAGCCCTTGGTGTGGT TTTCTACCGACTCCTCTTTCACCGACATTGCTTCTGGCTCAGTTGCAAGC TCATTTTTCGTCCCATGCGCTCGCCCGCCTAGTCGCCGAAATTCTGGCCG TGCTCTCTGTCTAGCACAGGTCCCCACGGTGTTGTTTCCGTTCGTTCAGA TGTGGAAGTGCAGTACCCCCGCCGGTTAGCGCGGTCAATATTGTACAAAG AAACACAAACACGCATAAAAGAACATTATGCCTCCATTTTTATCCGTCGC ATTATGTTAAAGGTGATGCAAGACCACCAGCGGCTGGGCGTGCCCCTGCC AGCGGGCGCCAGCGAGCAGATGGACTACATGCGCGTCGTCGAACACCGCA GGATGGAGGCCGCCACAGCGCGGCAGCGCGACAACGCCTCCGCCGCCGCC GCCGCGGCTGCCGCCGCCGCCGAGGAGGCTCGATCGAGGGGGCCGACGAC GGCGAGCTTCAAGGACGTCGTGGAAGGGTACGCTGCGCAGAACGGGGTAA TGTTCTTGCCCAAGCCTGGGAGACAGCACGAGGGAAAGCAGGCGAGTATT GTTTTGCGTTTGCTTGGTGGTTGCTTCATTCTGTTTGTTTTTATGCTCTC ATGTGATCTGGGTGAGAAGACAAAGGTGGGCTGCTGGTCGCTTCGTGTTC GGCATATCACTTGTTGATGCCTCGGTGGTGCCCGTGTCTTGTTTCTGTGG GAAGCCGCGACGGCTGCTAGTGGCCGCTCTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18150:389..3069+

>mRNA_Ecto-sp13_S_contig18150.5605.1 ID=mRNA_Ecto-sp13_S_contig18150.5605.1|Name=mRNA_Ecto-sp13_S_contig18150.5605.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=615bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18150:389..3069+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGGCTCTGTTGAGCAAGTTCGTCGCCCCCAAGCTGGTGGCCGGCCT
GAGGGCTTCGCTCGTCATCAACCCCGCCAACCAGGACATGGCTCCCTTCG
ACATGCTCATGATGTGGGCAGACCTTCTACCGCCGTTGTACATGACTAGC
ATCCTCGACGTGGAGTTTTTCCCCAAGTGGCTCACGGTTTTGCACCGCTG
GCTCAGCGAAACAGCGGACTATGCCGAGGTTGCTTTATGGTACCAAGGCT
GGAAGGATCGTTTCCCGGAGAGCTTGCGATCGGACCCTAGGGTGATGGCC
CAGTTCAGCGCGGCCCTGAGCCTCATGGACCAGGTGATGCAAGACCACCA
GCGGCTGGGCGTGCCCCTGCCAGCGGGCGCCAGCGAGCAGATGGACTACA
TGCGCGTCGTCGAACACCGCAGGATGGAGGCCGCCACAGCGCGGCAGCGC
GACAACGCCTCCGCCGCCGCCGCCGCGGCTGCCGCCGCCGCCGAGGAGGC
TCGATCGAGGGGGCCGACGACGGCGAGCTTCAAGGACGTCGTGGAAGGGT
ACGCTGCGCAGAACGGGACAAAGGTGGGCTGCTGGTCGCTTCGTGTTCGG
CATATCACTTGTTGA
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