mRNA_Ecto-sp13_S_contig18149.5602.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig18149.5602.1 vs. uniprot
Match: D7FR72_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR72_ECTSI) HSP 1 Score: 467 bits (1202), Expect = 8.950e-160 Identity = 294/320 (91.88%), Postives = 298/320 (93.12%), Query Frame = 1
Query: 1 SGDIRHALLNLQMSVGGRGGSGSTAAATAAAAVGRSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTGQRDTFLTQFHALGKLLYAKRAPPDSDGASGWPTAGGGXXXXXXEGRGPLAFVPEEVLSQGGMELDWALAFLQYHCVDFYTDESELSQGLGYFSDADVFASRMFDSSRGYDGGGEQGVFPQRYAESIASRATAASNRHPAKSRMRAFGAPKSFEMRRSRKEASGALRRFVGDAWDASGGDADALWASSRHLKEAVDTDLLPTARLITGEWEAEAALRSLLQRFMQDKEQQQEGQQQ 960
+GDIRHALLNLQMSVGGRGGSGSTAAA AAVGRSN XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX QRDTFLTQFHALGKLLYAKR PPDSDGA GWPTAGGGXXXXXXEGRGPLAFVPE+VLSQGGMELDWALAFLQYHCVDFYTDESELSQGLGYFSDAD+FASRMFDSSRGYDGGGEQ VFPQRYAESIASRATA SNRHPAKSRMRAFGAPKSFEMRRSRKEASGALRRFVGDAWDASGGDADALWASSRHLKEAVDTDLLPTARLITGEWEAEAALRSLLQRFMQD+EQQQEGQQQ
Sbjct: 178 TGDIRHALLNLQMSVGGRGGSGSTAAA---AAVGRSNGGRGRAKRSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----QRDTFLTQFHALGKLLYAKRVPPDSDGAGGWPTAGGGXXXXXXEGRGPLAFVPEDVLSQGGMELDWALAFLQYHCVDFYTDESELSQGLGYFSDADMFASRMFDSSRGYDGGGEQAVFPQRYAESIASRATAVSNRHPAKSRMRAFGAPKSFEMRRSRKEASGALRRFVGDAWDASGGDADALWASSRHLKEAVDTDLLPTARLITGEWEAEAALRSLLQRFMQDREQQQEGQQQ 489
BLAST of mRNA_Ecto-sp13_S_contig18149.5602.1 vs. uniprot
Match: A0A6H5KBK1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBK1_9PHAE) HSP 1 Score: 238 bits (608), Expect = 2.120e-71 Identity = 159/194 (81.96%), Postives = 160/194 (82.47%), Query Frame = 1
Query: 1 SGDIRHALLNLQMSVGGRGGSGSTAAATAAAAVGRSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTGQRDTFLTQFHALGKLLYAKRAPPDSDGASGWPT--AGGGXXXXXXEGRGPLAFVPEEVLSQGGMELDWALAFLQYHCVDFYTDESELSQGLGYFSDADVFASRMFDSSR 576
+GDIRHALLNLQMSVGGRG SGSTAAA AAAAVGRSN XXXXXXXXXXXXXXX XXXX XXXXX GTGQRDTFLTQFHALGKLLYAKR PPDSDGA GWPT AGG EGRGPLAFVPEEVLSQGGMELDWALAFLQYHCVDFYTDESELSQGLGYFSDADVFASRMFDSSR
Sbjct: 308 AGDIRHALLNLQMSVGGRGRSGSTAAAKAAAAVGRSNGGRGQAMLSXXXXXXXXXXXXXXXGRKKRXXXXSKSCXXXXXAG-GTGQRDTFLTQFHALGKLLYAKRNPPDSDGAGGWPTTGAGGERGDGGVEGRGPLAFVPEEVLSQGGMELDWALAFLQYHCVDFYTDESELSQGLGYFSDADVFASRMFDSSR 500
BLAST of mRNA_Ecto-sp13_S_contig18149.5602.1 vs. uniprot
Match: A0A7S2PU50_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PU50_9STRA) HSP 1 Score: 112 bits (281), Expect = 1.880e-24 Identity = 69/160 (43.12%), Postives = 89/160 (55.62%), Query Frame = 1
Query: 256 QRDTFLTQFHALGKLLYAKRAPPDSDGASGWPTAGGGXXXXXXEGRGPLAFVPEEVLSQGGMELDWALAFLQYHCVDFYTDESELSQGLGYFSDADVFASRMFDSSRGYDGGGEQGVFPQRYAESIASRATAASNRHPAKSRMRAFGAPKSFEMRRSRKE 735
+RDT L+ FHALGKL++AKR P D +GRGPL F PE++LS+ GM + A++FL YHC D++TD +E+S+ FS+AD+F SR Y GG Q YA SI SRA A SNR PA R APK F + + E
Sbjct: 210 KRDTKLSMFHALGKLIHAKRKPLCQDTME--------ETKMWDDGRGPLEFDPEDILSRSGMAVGSAVSFLSYHCPDYFTDITEMSRAFDRFSEADMFVSRF------YQGGAGQSTL--EYASSIGSRAIADSNRTPAPPAFRQLSAPKVFGVMKKSSE 353
BLAST of mRNA_Ecto-sp13_S_contig18149.5602.1 vs. uniprot
Match: K0R928_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R928_THAOC) HSP 1 Score: 114 bits (284), Expect = 2.010e-24 Identity = 81/210 (38.57%), Postives = 106/210 (50.48%), Query Frame = 1
Query: 259 RDTFLTQFHALGKLLYAKRAPPDSDGAS-----GWPTAGGGXXXXXXEGRGPLAFVPEEVLSQGGMELDWALAFLQYHCVDFYTDESELSQGLGYFSDADVFASRMFDSSRGYDGGGEQGVFPQRYAESIASRATAASNRHPAKSRMRAFGAPKSFEMRRSRKEASGALRRFVGDAWDASGGDAD-ALWASSRHLKEAVDTDLLPTARLI 870
+D L+ FHALGKLLYAKR P + D A P +GR PL F P+ VLS M D +F+ YHC DF+TD ++L +G SDA VF R + G G G +P YA ++ RA A NR+PA R R AP+S+ + R +E + L G +S GD A S L E V TD+LP AR++
Sbjct: 365 KDARLSMFHALGKLLYAKRGPREEDDAGRSRFGSDPAISEAVRRAWDDGRPPLLFDPDRVLSTIEMGPDAGTSFVSYHCPDFHTDPTDLDGTIGTLSDAAVFLDRSMRAG----GSGSDGPYPTDYAVALGGRAVAVFNRNPAPPRFRKLTAPESYGVMRKERENARRLVGIRGRLLASSSGDGGGAPRPSVGGLAEFV-TDVLPHARIV 569
BLAST of mRNA_Ecto-sp13_S_contig18149.5602.1 vs. uniprot
Match: A0A7S4UW67_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4UW67_9STRA) HSP 1 Score: 113 bits (283), Expect = 2.570e-24 Identity = 78/179 (43.58%), Postives = 95/179 (53.07%), Query Frame = 1
Query: 253 GQRDTFLTQFHALGKLLYAKRAPPDSDG-ASGWPTAGGGXXXXXXE------------------GRGPLAFVPEEVLSQGGMELDWALAFLQYHCVDFYTDESELSQGLGYFSDADVFASRMFDSSRGYDGGGEQGVFPQRYAESIASRATAASNRHPAKSRMRAFGAPKSFEMRRSRK 732
G+RDT L+ FHALGKLLYAKR DG A TA E R PL FVPE V+++ + AL+FL YH DF+T+E+ELS+ FSDA VF R FD+ R + VFP Y SIA RA A +NRHPA R RA APK FE+ R ++
Sbjct: 320 GERDTKLSTFHALGKLLYAKRK---KDGVAKAQETASLFSHALKPEWHATNEQFIRKPSDIWKDSRPPLDFVPEAVMNESDIGRGGALSFLSYHSPDFFTNETELSKVFDLFSDAAVFLDRSFDTQRDHS----DAVFPLEYVSSIAGRAIADTNRHPAPHRFRALDAPKVFEVMRKKR 491
BLAST of mRNA_Ecto-sp13_S_contig18149.5602.1 vs. uniprot
Match: A0A7S1V8V5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V8V5_9STRA) HSP 1 Score: 105 bits (261), Expect = 8.570e-23 Identity = 67/160 (41.88%), Postives = 85/160 (53.12%), Query Frame = 1
Query: 250 TGQRDTFLTQFHALGKLLYAKR---APPDSDGASGWPTAGGGXXXXXXEGRGPLAFVPEEVLSQGGMELDWALAFLQYHCVDFYTDESELSQGLGYFSDADVFASRMFDSSRGYDGGGEQGVFPQRYAESIASRATAASNRHPAKSRMRAFGAPKSFEMR 720
TG+RDT L+ FHALGK+LYAKR P G R PL F PE+V+ + L A+ FL +H DF+TD ELS+ + FSDA + + S++ FP RY ESIA RA A +N HPA ++ RA APKS EMR
Sbjct: 76 TGKRDTRLSTFHALGKILYAKRQTDVPVSEPGE-----------------RPPLQFDPEKVIQHSDLYLTGAVGFLSFHSPDFFTDIEELSRAMDSFSDASILLQQTPQSAQ------LTTTFPDRYVESIAGRAIADANLHPAPTKFRALSAPKSSEMR 212
BLAST of mRNA_Ecto-sp13_S_contig18149.5602.1 vs. uniprot
Match: B8C3M9_THAPS (RanBP2-type domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C3M9_THAPS) HSP 1 Score: 109 bits (272), Expect = 9.960e-23 Identity = 68/177 (38.42%), Postives = 91/177 (51.41%), Query Frame = 1
Query: 256 QRDTFLTQFHALGKLLYAKRAPPDSD---------GASGWPTAGGGXXXXXXEGRGPLAFVPEEVLSQGGMELDWALAFLQYHCVDFYTDESELSQGLGYFSDADVFASRMFDSSRGYDGGGEQGVFPQRYAESIASRATAASNRHPAKSRMRAFGAPKSFEMRRSRKEASGALRRF 759
+RD L+ FHALGKLLYAKR P D G S W +GRGPL FVPE+VL + M A++F+ YH DF+TD ++LS SDA F R+ G G FP YA S+ RA A +N++PA S+ R APK FE+ ++E +++
Sbjct: 682 KRDVKLSTFHALGKLLYAKRKPRSQDPYSTTEKRTGISAW-----------DDGRGPLDFVPEQVLEKTDMATSSAISFIAYHSPDFFTDIAQLSDAFDSISDAGEFMDRL---------GQTDGPFPMDYASSLGGRAIADANKNPAPSQFRHLSAPKVFEVMNKKRENETKMKQL 838
BLAST of mRNA_Ecto-sp13_S_contig18149.5602.1 vs. uniprot
Match: A0A7S2XHY2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XHY2_9STRA) HSP 1 Score: 102 bits (254), Expect = 3.370e-22 Identity = 64/176 (36.36%), Postives = 91/176 (51.70%), Query Frame = 1
Query: 256 QRDTFLTQFHALGKLLYAKRAPPDSDGASGWPTA--------GGGXXXXXXEGRGPLAFVPEEVLSQGGMELDWALAFLQYHCVDFYTDESELSQGLGYFSDADVFASRMFDSSRGYDGGGEQGVFPQRYAESIASRATAASNRHPAKSRMRAFGAPKSFEMRRSRKEASGALRRF 759
QRDT L+ FHALGKLLYAKR + ++ + R PL + PE V+++ + AL+FLQYHC +F++D ELS L FSDA +F D S G ++P Y S+ RA A +N+HPA + R+FGAPK F++ R ++ + R
Sbjct: 25 QRDTKLSTFHALGKLLYAKRKNATQEHPMRLLSSDVLVEEDPAFTRRLARIDARPPLEYDPERVMNESDIGRGGALSFLQYHCTEFFSDSIELSTALDRFSDAALF----LDRSTNPQGSHVDSIYPAEYVSSLGGRAVADANKHPAPNCFRSFGAPKIFDVLRKKRGNDAKMERL 196
BLAST of mRNA_Ecto-sp13_S_contig18149.5602.1 vs. uniprot
Match: W7TS41_9STRA (Checkpoint protein Rad24 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TS41_9STRA) HSP 1 Score: 103 bits (257), Expect = 8.900e-21 Identity = 76/210 (36.19%), Postives = 111/210 (52.86%), Query Frame = 1
Query: 256 QRDTFLTQFHALGKLLYAKRAPPDSDGASGWPTAGGGXXXXXXEGRGPLAFVPEEVLSQGGMELDWALAFLQYHCVDFYTDESELSQGLGYFSDADVFASRMFDSSRGYDGGGEQGVFPQRYAESIASRATAASNRHPAKSR---MRAFGAPKSFEMRRSRKEASGALRRFVGDAWDASGGDADALWASSRHLK--EAVDTDLLPTARLI 870
++DT+++ FHALGK+L+AKR P + G + RG L+FVPEEVL + ME + AF+Q H + + D EL++ + +F+DADV +R++ ++ D FP+ Y SI R A SNRHPA + R AP+ FE+ R R+E RR D G A A ASS + E VD +++P A+ I
Sbjct: 666 RKDTYMSSFHALGKVLHAKRLPESDESRKG-----------EGDPRGRLSFVPEEVLKRCEMEAEGLSAFVQTHALALFGDVEELAEAMAFFADADVLLARVYSTAFHRDR--TDATFPEEYVLSILGRTVAHSNRHPAGGQGTGFRGMTAPRYFEVLRQRRETG---RRLGLLCQDYVGKVARAGRASSIRMTVGEMVD-EMVPFAKQI 858
BLAST of mRNA_Ecto-sp13_S_contig18149.5602.1 vs. uniprot
Match: A0A7S1D583_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D583_CYCTE) HSP 1 Score: 99.4 bits (246), Expect = 5.310e-20 Identity = 67/160 (41.88%), Postives = 82/160 (51.25%), Query Frame = 1
Query: 256 QRDTFLTQFHALGKLLYAKRAPPDSDGASGWPTAGGGXXXXXXEGRGPLAFVPEEVLSQGGMELDWALAFLQYHCVDFYTDESELSQGLGYFSDADVFASRMFDSSRGYDGGGEQGVFPQRYAESIASRATAASNRHPAKSRMRAFGAPKSFEMRRSRKE 735
QR LT FHALGKLLYAKR GRG L F PEEVL GM LD A FLQ + +DF+TD SE S+ FSDA R SS D +FP YA S+A+RA +N HPA ++ R APK++E+ R ++
Sbjct: 98 QRAVSLTSFHALGKLLYAKRENSTL-------------------GRGQLLFDPEEVLETSGMSLDSATTFLQGNGLDFFTDISEWSKACCRFSDAATLLQRSSSSS---DSNHTTTLFPNGYAASLAARAVGDANHHPAPAKFRYLTAPKTYEVYRKARD 235 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18149.5602.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig18149.5602.1 >prot_Ecto-sp13_S_contig18149.5602.1 ID=prot_Ecto-sp13_S_contig18149.5602.1|Name=mRNA_Ecto-sp13_S_contig18149.5602.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=321bp SGDIRHALLNLQMSVGGRGGSGSTAAATAAAAVGRSNGGRGRAKRSGAAAback to top mRNA from alignment at Ecto-sp13_S_contig18149:117..3540+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig18149.5602.1 ID=mRNA_Ecto-sp13_S_contig18149.5602.1|Name=mRNA_Ecto-sp13_S_contig18149.5602.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3424bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18149:117..3540+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18149:117..3540+ >mRNA_Ecto-sp13_S_contig18149.5602.1 ID=mRNA_Ecto-sp13_S_contig18149.5602.1|Name=mRNA_Ecto-sp13_S_contig18149.5602.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=963bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18149:117..3540+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |