mRNA_Ecto-sp13_S_contig18149.5602.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18149.5602.1
Unique NamemRNA_Ecto-sp13_S_contig18149.5602.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig18149.5602.1 vs. uniprot
Match: D7FR72_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR72_ECTSI)

HSP 1 Score: 467 bits (1202), Expect = 8.950e-160
Identity = 294/320 (91.88%), Postives = 298/320 (93.12%), Query Frame = 1
Query:    1 SGDIRHALLNLQMSVGGRGGSGSTAAATAAAAVGRSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTGQRDTFLTQFHALGKLLYAKRAPPDSDGASGWPTAGGGXXXXXXEGRGPLAFVPEEVLSQGGMELDWALAFLQYHCVDFYTDESELSQGLGYFSDADVFASRMFDSSRGYDGGGEQGVFPQRYAESIASRATAASNRHPAKSRMRAFGAPKSFEMRRSRKEASGALRRFVGDAWDASGGDADALWASSRHLKEAVDTDLLPTARLITGEWEAEAALRSLLQRFMQDKEQQQEGQQQ 960
            +GDIRHALLNLQMSVGGRGGSGSTAAA   AAVGRSN          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     QRDTFLTQFHALGKLLYAKR PPDSDGA GWPTAGGGXXXXXXEGRGPLAFVPE+VLSQGGMELDWALAFLQYHCVDFYTDESELSQGLGYFSDAD+FASRMFDSSRGYDGGGEQ VFPQRYAESIASRATA SNRHPAKSRMRAFGAPKSFEMRRSRKEASGALRRFVGDAWDASGGDADALWASSRHLKEAVDTDLLPTARLITGEWEAEAALRSLLQRFMQD+EQQQEGQQQ
Sbjct:  178 TGDIRHALLNLQMSVGGRGGSGSTAAA---AAVGRSNGGRGRAKRSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----QRDTFLTQFHALGKLLYAKRVPPDSDGAGGWPTAGGGXXXXXXEGRGPLAFVPEDVLSQGGMELDWALAFLQYHCVDFYTDESELSQGLGYFSDADMFASRMFDSSRGYDGGGEQAVFPQRYAESIASRATAVSNRHPAKSRMRAFGAPKSFEMRRSRKEASGALRRFVGDAWDASGGDADALWASSRHLKEAVDTDLLPTARLITGEWEAEAALRSLLQRFMQDREQQQEGQQQ 489          
BLAST of mRNA_Ecto-sp13_S_contig18149.5602.1 vs. uniprot
Match: A0A6H5KBK1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBK1_9PHAE)

HSP 1 Score: 238 bits (608), Expect = 2.120e-71
Identity = 159/194 (81.96%), Postives = 160/194 (82.47%), Query Frame = 1
Query:    1 SGDIRHALLNLQMSVGGRGGSGSTAAATAAAAVGRSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTGQRDTFLTQFHALGKLLYAKRAPPDSDGASGWPT--AGGGXXXXXXEGRGPLAFVPEEVLSQGGMELDWALAFLQYHCVDFYTDESELSQGLGYFSDADVFASRMFDSSR 576
            +GDIRHALLNLQMSVGGRG SGSTAAA AAAAVGRSN         XXXXXXXXXXXXXXX     XXXX    XXXXX   GTGQRDTFLTQFHALGKLLYAKR PPDSDGA GWPT  AGG       EGRGPLAFVPEEVLSQGGMELDWALAFLQYHCVDFYTDESELSQGLGYFSDADVFASRMFDSSR
Sbjct:  308 AGDIRHALLNLQMSVGGRGRSGSTAAAKAAAAVGRSNGGRGQAMLSXXXXXXXXXXXXXXXGRKKRXXXXSKSCXXXXXAG-GTGQRDTFLTQFHALGKLLYAKRNPPDSDGAGGWPTTGAGGERGDGGVEGRGPLAFVPEEVLSQGGMELDWALAFLQYHCVDFYTDESELSQGLGYFSDADVFASRMFDSSR 500          
BLAST of mRNA_Ecto-sp13_S_contig18149.5602.1 vs. uniprot
Match: A0A7S2PU50_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PU50_9STRA)

HSP 1 Score: 112 bits (281), Expect = 1.880e-24
Identity = 69/160 (43.12%), Postives = 89/160 (55.62%), Query Frame = 1
Query:  256 QRDTFLTQFHALGKLLYAKRAPPDSDGASGWPTAGGGXXXXXXEGRGPLAFVPEEVLSQGGMELDWALAFLQYHCVDFYTDESELSQGLGYFSDADVFASRMFDSSRGYDGGGEQGVFPQRYAESIASRATAASNRHPAKSRMRAFGAPKSFEMRRSRKE 735
            +RDT L+ FHALGKL++AKR P   D                 +GRGPL F PE++LS+ GM +  A++FL YHC D++TD +E+S+    FS+AD+F SR       Y GG  Q      YA SI SRA A SNR PA    R   APK F + +   E
Sbjct:  210 KRDTKLSMFHALGKLIHAKRKPLCQDTME--------ETKMWDDGRGPLEFDPEDILSRSGMAVGSAVSFLSYHCPDYFTDITEMSRAFDRFSEADMFVSRF------YQGGAGQSTL--EYASSIGSRAIADSNRTPAPPAFRQLSAPKVFGVMKKSSE 353          
BLAST of mRNA_Ecto-sp13_S_contig18149.5602.1 vs. uniprot
Match: K0R928_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R928_THAOC)

HSP 1 Score: 114 bits (284), Expect = 2.010e-24
Identity = 81/210 (38.57%), Postives = 106/210 (50.48%), Query Frame = 1
Query:  259 RDTFLTQFHALGKLLYAKRAPPDSDGAS-----GWPTAGGGXXXXXXEGRGPLAFVPEEVLSQGGMELDWALAFLQYHCVDFYTDESELSQGLGYFSDADVFASRMFDSSRGYDGGGEQGVFPQRYAESIASRATAASNRHPAKSRMRAFGAPKSFEMRRSRKEASGALRRFVGDAWDASGGDAD-ALWASSRHLKEAVDTDLLPTARLI 870
            +D  L+ FHALGKLLYAKR P + D A        P           +GR PL F P+ VLS   M  D   +F+ YHC DF+TD ++L   +G  SDA VF  R   +     G G  G +P  YA ++  RA A  NR+PA  R R   AP+S+ + R  +E +  L    G    +S GD   A   S   L E V TD+LP AR++
Sbjct:  365 KDARLSMFHALGKLLYAKRGPREEDDAGRSRFGSDPAISEAVRRAWDDGRPPLLFDPDRVLSTIEMGPDAGTSFVSYHCPDFHTDPTDLDGTIGTLSDAAVFLDRSMRAG----GSGSDGPYPTDYAVALGGRAVAVFNRNPAPPRFRKLTAPESYGVMRKERENARRLVGIRGRLLASSSGDGGGAPRPSVGGLAEFV-TDVLPHARIV 569          
BLAST of mRNA_Ecto-sp13_S_contig18149.5602.1 vs. uniprot
Match: A0A7S4UW67_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4UW67_9STRA)

HSP 1 Score: 113 bits (283), Expect = 2.570e-24
Identity = 78/179 (43.58%), Postives = 95/179 (53.07%), Query Frame = 1
Query:  253 GQRDTFLTQFHALGKLLYAKRAPPDSDG-ASGWPTAGGGXXXXXXE------------------GRGPLAFVPEEVLSQGGMELDWALAFLQYHCVDFYTDESELSQGLGYFSDADVFASRMFDSSRGYDGGGEQGVFPQRYAESIASRATAASNRHPAKSRMRAFGAPKSFEMRRSRK 732
            G+RDT L+ FHALGKLLYAKR     DG A    TA         E                   R PL FVPE V+++  +    AL+FL YH  DF+T+E+ELS+    FSDA VF  R FD+ R +       VFP  Y  SIA RA A +NRHPA  R RA  APK FE+ R ++
Sbjct:  320 GERDTKLSTFHALGKLLYAKRK---KDGVAKAQETASLFSHALKPEWHATNEQFIRKPSDIWKDSRPPLDFVPEAVMNESDIGRGGALSFLSYHSPDFFTNETELSKVFDLFSDAAVFLDRSFDTQRDHS----DAVFPLEYVSSIAGRAIADTNRHPAPHRFRALDAPKVFEVMRKKR 491          
BLAST of mRNA_Ecto-sp13_S_contig18149.5602.1 vs. uniprot
Match: A0A7S1V8V5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V8V5_9STRA)

HSP 1 Score: 105 bits (261), Expect = 8.570e-23
Identity = 67/160 (41.88%), Postives = 85/160 (53.12%), Query Frame = 1
Query:  250 TGQRDTFLTQFHALGKLLYAKR---APPDSDGASGWPTAGGGXXXXXXEGRGPLAFVPEEVLSQGGMELDWALAFLQYHCVDFYTDESELSQGLGYFSDADVFASRMFDSSRGYDGGGEQGVFPQRYAESIASRATAASNRHPAKSRMRAFGAPKSFEMR 720
            TG+RDT L+ FHALGK+LYAKR    P    G                  R PL F PE+V+    + L  A+ FL +H  DF+TD  ELS+ +  FSDA +   +   S++          FP RY ESIA RA A +N HPA ++ RA  APKS EMR
Sbjct:   76 TGKRDTRLSTFHALGKILYAKRQTDVPVSEPGE-----------------RPPLQFDPEKVIQHSDLYLTGAVGFLSFHSPDFFTDIEELSRAMDSFSDASILLQQTPQSAQ------LTTTFPDRYVESIAGRAIADANLHPAPTKFRALSAPKSSEMR 212          
BLAST of mRNA_Ecto-sp13_S_contig18149.5602.1 vs. uniprot
Match: B8C3M9_THAPS (RanBP2-type domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C3M9_THAPS)

HSP 1 Score: 109 bits (272), Expect = 9.960e-23
Identity = 68/177 (38.42%), Postives = 91/177 (51.41%), Query Frame = 1
Query:  256 QRDTFLTQFHALGKLLYAKRAPPDSD---------GASGWPTAGGGXXXXXXEGRGPLAFVPEEVLSQGGMELDWALAFLQYHCVDFYTDESELSQGLGYFSDADVFASRMFDSSRGYDGGGEQGVFPQRYAESIASRATAASNRHPAKSRMRAFGAPKSFEMRRSRKEASGALRRF 759
            +RD  L+ FHALGKLLYAKR P   D         G S W            +GRGPL FVPE+VL +  M    A++F+ YH  DF+TD ++LS      SDA  F  R+         G   G FP  YA S+  RA A +N++PA S+ R   APK FE+   ++E    +++ 
Sbjct:  682 KRDVKLSTFHALGKLLYAKRKPRSQDPYSTTEKRTGISAW-----------DDGRGPLDFVPEQVLEKTDMATSSAISFIAYHSPDFFTDIAQLSDAFDSISDAGEFMDRL---------GQTDGPFPMDYASSLGGRAIADANKNPAPSQFRHLSAPKVFEVMNKKRENETKMKQL 838          
BLAST of mRNA_Ecto-sp13_S_contig18149.5602.1 vs. uniprot
Match: A0A7S2XHY2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XHY2_9STRA)

HSP 1 Score: 102 bits (254), Expect = 3.370e-22
Identity = 64/176 (36.36%), Postives = 91/176 (51.70%), Query Frame = 1
Query:  256 QRDTFLTQFHALGKLLYAKRAPPDSDGASGWPTA--------GGGXXXXXXEGRGPLAFVPEEVLSQGGMELDWALAFLQYHCVDFYTDESELSQGLGYFSDADVFASRMFDSSRGYDGGGEQGVFPQRYAESIASRATAASNRHPAKSRMRAFGAPKSFEMRRSRKEASGALRRF 759
            QRDT L+ FHALGKLLYAKR     +      ++                 + R PL + PE V+++  +    AL+FLQYHC +F++D  ELS  L  FSDA +F     D S    G     ++P  Y  S+  RA A +N+HPA +  R+FGAPK F++ R ++     + R 
Sbjct:   25 QRDTKLSTFHALGKLLYAKRKNATQEHPMRLLSSDVLVEEDPAFTRRLARIDARPPLEYDPERVMNESDIGRGGALSFLQYHCTEFFSDSIELSTALDRFSDAALF----LDRSTNPQGSHVDSIYPAEYVSSLGGRAVADANKHPAPNCFRSFGAPKIFDVLRKKRGNDAKMERL 196          
BLAST of mRNA_Ecto-sp13_S_contig18149.5602.1 vs. uniprot
Match: W7TS41_9STRA (Checkpoint protein Rad24 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TS41_9STRA)

HSP 1 Score: 103 bits (257), Expect = 8.900e-21
Identity = 76/210 (36.19%), Postives = 111/210 (52.86%), Query Frame = 1
Query:  256 QRDTFLTQFHALGKLLYAKRAPPDSDGASGWPTAGGGXXXXXXEGRGPLAFVPEEVLSQGGMELDWALAFLQYHCVDFYTDESELSQGLGYFSDADVFASRMFDSSRGYDGGGEQGVFPQRYAESIASRATAASNRHPAKSR---MRAFGAPKSFEMRRSRKEASGALRRFVGDAWDASGGDADALWASSRHLK--EAVDTDLLPTARLI 870
            ++DT+++ FHALGK+L+AKR P   +   G             + RG L+FVPEEVL +  ME +   AF+Q H +  + D  EL++ + +F+DADV  +R++ ++   D       FP+ Y  SI  R  A SNRHPA  +    R   AP+ FE+ R R+E     RR      D  G  A A  ASS  +   E VD +++P A+ I
Sbjct:  666 RKDTYMSSFHALGKVLHAKRLPESDESRKG-----------EGDPRGRLSFVPEEVLKRCEMEAEGLSAFVQTHALALFGDVEELAEAMAFFADADVLLARVYSTAFHRDR--TDATFPEEYVLSILGRTVAHSNRHPAGGQGTGFRGMTAPRYFEVLRQRRETG---RRLGLLCQDYVGKVARAGRASSIRMTVGEMVD-EMVPFAKQI 858          
BLAST of mRNA_Ecto-sp13_S_contig18149.5602.1 vs. uniprot
Match: A0A7S1D583_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D583_CYCTE)

HSP 1 Score: 99.4 bits (246), Expect = 5.310e-20
Identity = 67/160 (41.88%), Postives = 82/160 (51.25%), Query Frame = 1
Query:  256 QRDTFLTQFHALGKLLYAKRAPPDSDGASGWPTAGGGXXXXXXEGRGPLAFVPEEVLSQGGMELDWALAFLQYHCVDFYTDESELSQGLGYFSDADVFASRMFDSSRGYDGGGEQGVFPQRYAESIASRATAASNRHPAKSRMRAFGAPKSFEMRRSRKE 735
            QR   LT FHALGKLLYAKR                        GRG L F PEEVL   GM LD A  FLQ + +DF+TD SE S+    FSDA     R   SS   D      +FP  YA S+A+RA   +N HPA ++ R   APK++E+ R  ++
Sbjct:   98 QRAVSLTSFHALGKLLYAKRENSTL-------------------GRGQLLFDPEEVLETSGMSLDSATTFLQGNGLDFFTDISEWSKACCRFSDAATLLQRSSSSS---DSNHTTTLFPNGYAASLAARAVGDANHHPAPAKFRYLTAPKTYEVYRKARD 235          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18149.5602.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D7FR72_ECTSI8.950e-16091.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KBK1_9PHAE2.120e-7181.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2PU50_9STRA1.880e-2443.13Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
K0R928_THAOC2.010e-2438.57Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A7S4UW67_9STRA2.570e-2443.58Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S1V8V5_9STRA8.570e-2341.88Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
B8C3M9_THAPS9.960e-2338.42RanBP2-type domain-containing protein n=1 Tax=Thal... [more]
A0A7S2XHY2_9STRA3.370e-2236.36Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
W7TS41_9STRA8.900e-2136.19Checkpoint protein Rad24 n=2 Tax=Monodopsidaceae T... [more]
A0A7S1D583_CYCTE5.310e-2041.88Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18149contigEcto-sp13_S_contig18149:117..3540 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score469.5
Seed ortholog evalue1.2e-129
Seed eggNOG ortholog2880.D7FR72
Preferred nameRAD17
Model size965
KEGG koko:K06662
KEGG Pathwayko04111,ko04113,map04111,map04113
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000075,GO:0000076,GO:0000077,GO:0000166,GO:0000228,GO:0000278,GO:0000280,GO:0000723,GO:0000785,GO:0000790,GO:0000792,GO:0003674,GO:0003682,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0006139,GO:0006259,GO:0006260,GO:0006275,GO:0006281,GO:0006282,GO:0006289,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007093,GO:0007095,GO:0007127,GO:0007131,GO:0007346,GO:0008144,GO:0008150,GO:0008152,GO:0008156,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010389,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010948,GO:0010972,GO:0016043,GO:0017076,GO:0019219,GO:0019220,GO:0019222,GO:0022402,GO:0022414,GO:0030554,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031347,GO:0031389,GO:0031570,GO:0031572,GO:0031573,GO:0031974,GO:0031981,GO:0032200,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033314,GO:0033554,GO:0034641,GO:0034645,GO:0035639,GO:0035825,GO:0036094,GO:0042325,GO:0042592,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044773,GO:0044774,GO:0044818,GO:0045786,GO:0045930,GO:0045934,GO:0046483,GO:0048285,GO:0048519,GO:0048523,GO:0048583,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051174,GO:0051276,GO:0051321,GO:0051716,GO:0051726,GO:0060249,GO:0060255,GO:0061982,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0097159,GO:0097367,GO:0140013,GO:1901265,GO:1901360,GO:1901363,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902749,GO:1902750,GO:1903046,GO:1903047,GO:1990421,GO:2000112,GO:2000113,GO:2001020
Exons5
EggNOG free text desc.mitotic DNA replication checkpoint
EggNOG OGsCOG0470@1,KOG1970@2759
Cds size963
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462936.7263641-CDS-Ecto-sp13_S_contig18149:116..6211681462936.7263641-CDS-Ecto-sp13_S_contig18149:116..621Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18149 117..621 +
1681462936.7375262-CDS-Ecto-sp13_S_contig18149:923..9941681462936.7375262-CDS-Ecto-sp13_S_contig18149:923..994Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18149 924..994 +
1681462936.7490323-CDS-Ecto-sp13_S_contig18149:1611..17151681462936.7490323-CDS-Ecto-sp13_S_contig18149:1611..1715Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18149 1612..1715 +
1681462936.762793-CDS-Ecto-sp13_S_contig18149:2452..26351681462936.762793-CDS-Ecto-sp13_S_contig18149:2452..2635Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18149 2453..2635 +
1681462936.7791135-CDS-Ecto-sp13_S_contig18149:3438..35381681462936.7791135-CDS-Ecto-sp13_S_contig18149:3438..3538Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18149 3439..3538 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18149.5602.1prot_Ecto-sp13_S_contig18149.5602.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18149 117..3538 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18149.5602.1

>prot_Ecto-sp13_S_contig18149.5602.1 ID=prot_Ecto-sp13_S_contig18149.5602.1|Name=mRNA_Ecto-sp13_S_contig18149.5602.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=321bp
SGDIRHALLNLQMSVGGRGGSGSTAAATAAAAVGRSNGGRGRAKRSGAAA
DAAAAAAAAGVGGRKKRGAGVSKSSAAGAAAGGTGQRDTFLTQFHALGKL
LYAKRAPPDSDGASGWPTAGGGGGDGGGEGRGPLAFVPEEVLSQGGMELD
WALAFLQYHCVDFYTDESELSQGLGYFSDADVFASRMFDSSRGYDGGGEQ
GVFPQRYAESIASRATAASNRHPAKSRMRAFGAPKSFEMRRSRKEASGAL
RRFVGDAWDASGGDADALWASSRHLKEAVDTDLLPTARLITGEWEAEAAL
RSLLQRFMQDKEQQQEGQQQH
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mRNA from alignment at Ecto-sp13_S_contig18149:117..3540+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18149.5602.1 ID=mRNA_Ecto-sp13_S_contig18149.5602.1|Name=mRNA_Ecto-sp13_S_contig18149.5602.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3424bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18149:117..3540+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCAGGGGACATCCGGCACGCGCTTCTGAACCTACAGATGAGTGTCGGCGG CAGGGGCGGCAGTGGCTCAACCGCTGCCGCCACCGCCGCCGCCGCTGTCG GGCGTTCCAACGGCGGGCGTGGCCGAGCCAAGCGCTCAGGGGCGGCGGCG GATGCGGCGGCGGCGGCGGCGGCGGCCGGGGTAGGCGGGAGGAAGAAACG AGGAGCCGGGGTTTCCAAGTCTAGCGCGGCGGGGGCGGCGGCGGGCGGCA CCGGGCAGAGGGACACGTTCTTGACGCAGTTTCACGCGCTCGGGAAGCTG CTGTATGCCAAGCGCGCCCCGCCCGATTCTGACGGAGCGAGTGGTTGGCC GACGGCAGGAGGGGGGGGTGGTGATGGTGGCGGTGAGGGACGGGGCCCCC TGGCGTTCGTTCCGGAGGAGGTGCTGTCGCAGGGCGGGATGGAGCTGGAC TGGGCGTTGGCGTTCCTGCAGTACCACTGTGTTGATTTCTACACGGATGA GAGCGGTGAGATAAGGGAGGGGGGTTGTAGCGCCAGTACTGTTTCGTGGT GTGTGTATTTGTATCCGTGTTTTGTCGCTTTTTGAACGAATGTGGAGCGA CGTGAGCATCAGAATTGTGCGCAGCACTGCTGCGTGCGCAGCATCGTAAC AACCGCTGTTCGACATTCCTTACCTACCTACCATGCGATGCTGCCTCCGT CCCTGAAGAGCTTTGATGCGGTGTCAAAGATACGAGTTCCCTCTTCAGTC CCTCCGGTCTTGGCACTAATTTTGTTTCCGACGTCTCTTGTGCTGCTTTC TCGACAGAGCTGTCGCAAGGGCTCGGCTACTTCTCCGACGCGGACGTCTT CGCGTCCAGGATGTTCGACTCCTCGAGAGTGAGTTAGTTGTTGCGCGTTT GTCGTATCGGTGGCTGCTGTCGTCGTCGAACTTGTCTGTCGTCGCCATCT GGGTTAGTCCATTGTCGACGAATAGGTCACAGTCTTTGACGGAACTATAT AGGTGTACTGCGGTCTGCGGGTTAGGGCTAGCCTTGAACGGATCATTTTA GATGTGAAATATTCCGTGCTATTGCTACCGCTGTAGAACTGGTGACATGT TCTGGTTCAGTCTTGTCGACATGGTCGTCTTGTGTGGACCGAAGAGTTGG CGCTTTGTCGTGAAGCACCGGTCCCCTATCGAGGTGTTGCAGTACACCCG CAGTCGTGCGGCCTAGAAGACGCCAGTACTGACAACTCGGTAACATGCGT ATATCAGTACGGCATGCCGATGACGACCTACGTGTATCGACCCTTGTCGA CCCTTAAACCGCTCTCGTCTCTGGGTTTGTTTTTCGATGTGCCTGTGGTT TCTCTCGTGTATCTCTTTGTCCTCCCCAACACTGAAAAACATGCAAGTAC AATGAAGACAAATTGAAATTTTTTATGTTCGTAGTGTTTCTACTTCTCAA GATGCTGGGTCGATTTATCCTTTTTTATATTCTTTGTTCTTCCAGGGCTA TGACGGCGGCGGCGAGCAGGGGGTCTTCCCGCAGAGGTACGCAGAGTCCA TCGCGTCGAGGGCCACCGCTGCCTCCAACCGGCACCCGGCGAAGAGCAGG TAGATAACTATACGCGTGCCGCAGCAAGAACACGAAAGAAGGAAAACATG TGCACATAGGGTTGTTCTTGTCCTTGCACCGATATAAGTAGGCACCGATA TAAGTGGATGGGAAAACACTGCGCGTAGGCCTGTTTTTTGCGTTAATCGA GATGGATAGGTGAAAAATGGTATGTTGTGTTGGCCTGTTGTGCACACGCA CATGAGTATGTCTTGCGTGGATGGGCTTGCCTCTTCGAGGGTGCGGGGCG GTGCAATTCTCACCGGTAGGCCTTGTTGCCCAGGGTTGTGTGTGGGGCAG GGCACCGTTTGTCGTTGTCCCTTCTGCGGAAGGAAGGGTGCCATGCACAC TCCAGATGGGTGGGATGTGCGCGGTTCAGCACGTGGAGATATACTGGTAA ACTAGTGCGCTTTGGTATGCCACCTGCTCCCGGCTATTATCGCTTAAAGT ACAGTCTAGGTTGTCCTGCAAAGTATTGTTTGATTACTGTTGTCATCCCC AAACATTGGCCGTCCCTCGCAGCCTGTAGATGTCACTACCCTACTGCGTT TTCTCTGTAAGTATTATCTTAGACGTGGCAATCTCACCGACATAATCCAA TGGTGGATGAAAACTTGCGTTTGCACCCATAGCAACAGCAACAGCAACAA CAACAACAACAACAACAACAACAACAACAACAACAACAACTGTACCAACA ACGTGAGCCGCACGCCAACGCCAAAAACACGAACAGGATGCGGGCTTTCG GAGCGCCGAAATCGTTCGAGATGCGCCGCAGCCGTAAGGAAGCGTCTGGC GCACTGCGGCGCTTCGTCGGGGACGCGTGGGACGCCTCGGGTGGGGATGC GGATGCCTTGTGGGCCTCCAGCAGGCACCTGAAGGAAGCCGTGGACACGG ACCTGTTGCCGACGGCGAGGTGAGAAATCCATGGTGATCATGTGTACCAT GTTTTTTTTTGTGTGTTGTGCATTTTTGTTGTTGTTGTATCTTCAACATC GATGCACATTTGTACCTTCGAACCTTTGTGTCCGTCAATTGGAACGATCA TCTTGAGAAGTACAGTAGTTGGCTTGTATTCGATCATTCTGTGTACGCGC GAACTACTCTGTGGTACCCGAAAGAAAAAATCTATGTGGGAGCAGCTCTG ATGACATGTACATATCCTGATAAAGTTCCCGTGTAGACTGGTTCTTTACG TTCTTCCGTTTATAGAAAGGACGTTTTACCCGATTTTTTGCCGACCTCAG GGTGCGCTTGCGCGCGTGCGCAAAGGCACCAAGCAGGCGTTTCGATTTTC CCTGACGGGTACAAGATGATTGGTCCGCCACCTTCGCACGAGGCGCCCAC GGAGCGCGTGCTGGCACCCATAGCGAGCTATTTCGAGCCCCTAGTACTTT GGTAGAAATAAGGGATGGCCACCTTACCGGTGTTGTTCCGTGGTGTACGA ATTTTCCACGAATTTTCCTTGGCTCACCCGCCTTCCCATGGTATACCTTG CGTCCGTCTGTGTTGCACTGTATGTATCTCGTGTGATTTTTCTGGAATTT TCTCCCGCGCACGCACATGTTTGAGTTTCTGTTCGCCCTCGTGCCCCTTC TCTACTCCGTGTCGGTCTGCCCCGCTTCCTTGGTTGTGCTCCCCTTGGGG GTCCCGGCAAACGCGATCGCTCGTTACACACGTGGTGTACCCCCCCTTGG GCGTCCCCGTGAATCAATCAAGGCTCATCACCGGGGAGTGGGAGGCGGAG GCGGCGCTCAGGTCGCTGCTGCAGCGCTTCATGCAGGACAAGGAGCAACA GCAGGAGGGCCAACAGCAGCATCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18149:117..3540+

>mRNA_Ecto-sp13_S_contig18149.5602.1 ID=mRNA_Ecto-sp13_S_contig18149.5602.1|Name=mRNA_Ecto-sp13_S_contig18149.5602.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=963bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18149:117..3540+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCAGGGGACATCCGGCACGCGCTTCTGAACCTACAGATGAGTGTCGGCGG
CAGGGGCGGCAGTGGCTCAACCGCTGCCGCCACCGCCGCCGCCGCTGTCG
GGCGTTCCAACGGCGGGCGTGGCCGAGCCAAGCGCTCAGGGGCGGCGGCG
GATGCGGCGGCGGCGGCGGCGGCGGCCGGGGTAGGCGGGAGGAAGAAACG
AGGAGCCGGGGTTTCCAAGTCTAGCGCGGCGGGGGCGGCGGCGGGCGGCA
CCGGGCAGAGGGACACGTTCTTGACGCAGTTTCACGCGCTCGGGAAGCTG
CTGTATGCCAAGCGCGCCCCGCCCGATTCTGACGGAGCGAGTGGTTGGCC
GACGGCAGGAGGGGGGGGTGGTGATGGTGGCGGTGAGGGACGGGGCCCCC
TGGCGTTCGTTCCGGAGGAGGTGCTGTCGCAGGGCGGGATGGAGCTGGAC
TGGGCGTTGGCGTTCCTGCAGTACCACTGTGTTGATTTCTACACGGATGA
GAGCGAGCTGTCGCAAGGGCTCGGCTACTTCTCCGACGCGGACGTCTTCG
CGTCCAGGATGTTCGACTCCTCGAGAGGCTATGACGGCGGCGGCGAGCAG
GGGGTCTTCCCGCAGAGGTACGCAGAGTCCATCGCGTCGAGGGCCACCGC
TGCCTCCAACCGGCACCCGGCGAAGAGCAGGATGCGGGCTTTCGGAGCGC
CGAAATCGTTCGAGATGCGCCGCAGCCGTAAGGAAGCGTCTGGCGCACTG
CGGCGCTTCGTCGGGGACGCGTGGGACGCCTCGGGTGGGGATGCGGATGC
CTTGTGGGCCTCCAGCAGGCACCTGAAGGAAGCCGTGGACACGGACCTGT
TGCCGACGGCGAGGCTCATCACCGGGGAGTGGGAGGCGGAGGCGGCGCTC
AGGTCGCTGCTGCAGCGCTTCATGCAGGACAAGGAGCAACAGCAGGAGGG
CCAACAGCAGCAT
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