mRNA_Ecto-sp13_S_contig1810.5572.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1810.5572.1
Unique NamemRNA_Ecto-sp13_S_contig1810.5572.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1810.5572.1 vs. uniprot
Match: D7G5S3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5S3_ECTSI)

HSP 1 Score: 207 bits (527), Expect = 6.330e-62
Identity = 98/113 (86.73%), Postives = 99/113 (87.61%), Query Frame = 2
Query:  716 MGCFQTVVAVIGIVAADKVSLHMMVFYFWLVALVIGSMFMWSIAALDFHFNFRVWLDKHWDDPALANVRDRLCANGTASDQCAVPPAGFPHGSPDLWCQAKYDSDECTAIKAE 1054
            MGCFQ             VSLHMMVFYFWLV+LVIGSMFMWSIAALDFHFNFRVWLDKHWDDPALANVRDRLC NGTASDQCAVPPAGFPHGSPDLWCQAKYDSDECTAIKAE
Sbjct:    1 MGCFQ-------------VSLHMMVFYFWLVSLVIGSMFMWSIAALDFHFNFRVWLDKHWDDPALANVRDRLCLNGTASDQCAVPPAGFPHGSPDLWCQAKYDSDECTAIKAE 100          
BLAST of mRNA_Ecto-sp13_S_contig1810.5572.1 vs. uniprot
Match: D7G5S4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5S4_ECTSI)

HSP 1 Score: 206 bits (525), Expect = 1.360e-60
Identity = 111/112 (99.11%), Postives = 112/112 (100.00%), Query Frame = 2
Query: 1193 MQSMINYLLVFPVVGAIVMGYVQSLHRPMLEVLGLVDLHYVVGALLLVVAVMGVLAGHLRHHLLLQVYMAGLGAVLMLYLVLITLGLVSWARLANGFDPDDPEGLVRIACEV 1528
            MQSMINYLLVFPVVGAIVMGYVQSLHRPMLEVLGLVDLHYVVGALLLVVAVMGVLAGHLRHHLLLQVYMAGLGAVLMLYLVLITLGLVSWARLA+GFDPDDPEGLVRIACEV
Sbjct:    1 MQSMINYLLVFPVVGAIVMGYVQSLHRPMLEVLGLVDLHYVVGALLLVVAVMGVLAGHLRHHLLLQVYMAGLGAVLMLYLVLITLGLVSWARLADGFDPDDPEGLVRIACEV 112          
BLAST of mRNA_Ecto-sp13_S_contig1810.5572.1 vs. uniprot
Match: A0A7S2R9T0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R9T0_9STRA)

HSP 1 Score: 120 bits (300), Expect = 6.850e-26
Identity = 72/240 (30.00%), Postives = 123/240 (51.25%), Query Frame = 2
Query:  560 RNWLIALNSFSMASGVVLAASAVSLL--LFTRYEEEEADGTDSTVYSTAVALAIMGCFQTVVAVIGIVAADKVSLHMMVFYFWLVALVIGSMFMWSIAALDFHFNFRVWLDKHWDDPALANVRDRLCANGTASD-QCAVPPAGFPHG------SPDLWCQAKYDSDECTAIKAEAVDKAMDFLSLFMNVAGGLSVSSVVEMLAALVLTVRVVTIPIIMRSMQSMINYLLVFPVVGAIVMG 1252
            R WLI  N   +   + +A  +  ++  ++    E   D  D+ +Y   +A+A++GC   + AV+GI  A KVSL M+V YFWL  L++    ++S+   +F   FR W+   WD P +++VR   C   + SD +CAV P   P        + D WC+  +++ +C  I  EA D+   F    +      S   ++ +  +L L  R+VT+ II +SM  +INY ++ P +  +++G
Sbjct:   13 RQWLILTNCLILICSLFIAGVSAYVINEIYKETFERSTDQEDTMLYFW-IAMAVLGCLHGLCAVVGITGALKVSLDMIVTYFWLAVLLLAPTLLFSVLMFEFQKLFRSWIKHRWDTPEMSSVRRSFCKPRSVSDTKCAVYPPSLPFKYNITDYTVDEWCEDFWNATDCRLIYIEATDQVTVFAEQALTATATASAVEILLLFFSLYLAYRIVTMSIITKSMNELINYFMILPAIAILLVG 251          
BLAST of mRNA_Ecto-sp13_S_contig1810.5572.1 vs. uniprot
Match: A0A8K1C801_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C801_PYTOL)

HSP 1 Score: 77.4 bits (189), Expect = 1.200e-11
Identity = 69/282 (24.47%), Postives = 131/282 (46.45%), Query Frame = 2
Query:  692 STAVALAIMGCFQTVVAVIGIVAADKVSLHMMVFYFWLVALVIGSMFMWSIAALDFHFNFRVWLDKHWDDPALANVRDRLCANGTASDQCAVPPAGFPHGSPDLWCQAKYDSDECTAIKAEAVDKAMDFLSLFMNVAGGLSVSSVVEMLAALVLTVRVVTIPIIMRSMQSMINYLLVFPVVGAIVMGY---VQSLHRPMLEVLGLVDLHYVVGALLLVVAVMGVLAGHLRHHLLLQVYMAGLGAVLMLYLVLITLGLVSWARLANGFDPDDPEGLVRIACEV 1528
            ++A ALA +G F  + +V+G V A +    M++ YF+L   +I  +F+ S +A+ F  +   WL  HW  P L  +R + C                                       E  D+A+ +L     + G L    ++ +LAA+   +R+VT+PI+M+++ ++IN+  +F V+G  + GY   V+S          +  +  VVG L+  ++V+G++A   +   +L +Y+ G+GA  +  LV          +LA+ ++      +  +AC++
Sbjct:   37 ASAAALASIGAFVVLFSVLGFVGAGREKSAMLMLYFFLNFFLITCLFISSYSAIAFQDSLESWLKIHWKHPVLDYLRTKPCC--------------------------------------ENYDEAVSYLESKFLILGALGFVCLLLVLAAMYCVIRIVTVPIVMKNLLTVINF--IFIVLGTGIFGYGCAVKSKDELTSGQEWIAIMFIVVGTLIFALSVIGIIASRSKSRTMLLIYIVGIGACFVALLVCAGAAFSFSDKLADNYNASQHRDV--MACDI 276          
BLAST of mRNA_Ecto-sp13_S_contig1810.5572.1 vs. uniprot
Match: A0A3F2RM06_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RM06_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 4.150e-11
Identity = 76/294 (25.85%), Postives = 131/294 (44.56%), Query Frame = 2
Query:  557 ERNWLIALNSFSMASGVVLAASAVSLLLFTRYEEEEADGTDSTVYSTAVALAIMGCFQTVVAVIGIVAADKVSLHMMVFYFWLVALVIGSMFMWSIAALDFHFNFRVWLDKHWDDPALANVRDRLCANGTASDQCAVPPAGFPHGSPDLWCQAKYDSDECTAIKAEAVDKAMDFLSLFMNVAGGLSVSSVVEMLAALVLTVRVVTIPIIMRSMQSMINYLLVFPVVGAIVMGYVQSLHRPMLEVLGLVDLHY-VVGALLLVVAVMGVLAGHLRHHLLLQVYMAGLGAVLMLYLV 1435
             R  L  L   S A GV L    + + L             S V ++A AL+ +G    ++A++G V A +    +++ +F+L  L++  +F+   AA  F      W+  HW    LA +R++ C        CA                                DK +D+L   + V G + V  ++ ++AA+   VR+VT+PI+MRSM S+ N + V    G  + G    +H  M      + + + VVG L++ ++V+G++    +   LL +Y+ GLG+ L+  LV
Sbjct:    4 SRKVLRLLCLLSFAGGVSLLGLGLQISL------------SSHVGASAAALSGLGGCVVLLALLGFVGAGRDKSRLLLLFFFLNFLLLTGLFVACYAAFFFRDALESWVKHHWSSDVLAALREKEC--------CAT------------------------------YDKTVDYLEHQLVVVGAVGVVCMLLVVAAMYCVVRIVTVPIVMRSMLSVTNAVFVLLGTGLFIFGLSVKVHDEMTSGQRWIAIIFIVVGTLMVALSVLGIVGSRAKSRSLLLIYVIGLGSCLIALLV 247          
BLAST of mRNA_Ecto-sp13_S_contig1810.5572.1 vs. uniprot
Match: H3GVR1_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GVR1_PHYRM)

HSP 1 Score: 74.3 bits (181), Expect = 1.260e-10
Identity = 73/294 (24.83%), Postives = 130/294 (44.22%), Query Frame = 2
Query:  557 ERNWLIALNSFSMASGVVLAASAVSLLLFTRYEEEEADGTDSTVYSTAVALAIMGCFQTVVAVIGIVAADKVSLHMMVFYFWLVALVIGSMFMWSIAALDFHFNFRVWLDKHWDDPALANVRDRLCANGTASDQCAVPPAGFPHGSPDLWCQAKYDSDECTAIKAEAVDKAMDFLSLFMNVAGGLSVSSVVEMLAALVLTVRVVTIPIIMRSMQSMINYLLVFPVVGAIVMGYVQSLHRPMLEVLGLVDLHY-VVGALLLVVAVMGVLAGHLRHHLLLQVYMAGLGAVLMLYLV 1435
             R +L  L   S   GV L   A+ L+L T +             ++A ALA +G    +++ +G V A +    +++ +F++  +++  +F+   AA  F      W+  HW    LA +RD  C   T SD                                     A+ +L   + V G + V+ ++ +LA++   VR+VT+PI+MRSM S++N +      G  + G    +H  M      + + + VVG L++ ++V+G++    +   LL +Y+ GLG  L+  LV
Sbjct:    4 SRKFLRLLTLLSFGCGVSLLGLALHLVLSTNFS------------ASAAALAALGGCVVLLSALGFVGAGRDKSRLLLLFFFVNFVLVTGLFVACYAAFFFQDALESWVKHHWTAHVLAALRDTSCC-ATYSD-------------------------------------AVQYLEHRVAVVGAVGVACMLLVLASMYCVVRIVTVPIVMRSMLSVMNAIFTLLGTGLFIFGLSVKVHDEMTSGQRWIAIIFIVVGTLMVALSVLGIIGSRSKSRSLLLIYIVGLGGCLVALLV 247          
BLAST of mRNA_Ecto-sp13_S_contig1810.5572.1 vs. uniprot
Match: A0A2P4WWC0_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WWC0_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 2.980e-10
Identity = 73/294 (24.83%), Postives = 132/294 (44.90%), Query Frame = 2
Query:  557 ERNWLIALNSFSMASGVVLAASAVSLLLFTRYEEEEADGTDSTVYSTAVALAIMGCFQTVVAVIGIVAADKVSLHMMVFYFWLVALVIGSMFMWSIAALDFHFNFRVWLDKHWDDPALANVRDRLCANGTASDQCAVPPAGFPHGSPDLWCQAKYDSDECTAIKAEAVDKAMDFLSLFMNVAGGLSVSSVVEMLAALVLTVRVVTIPIIMRSMQSMINYLLVFPVVGAIVMGYVQSLHRPMLEVLGLVDLHY-VVGALLLVVAVMGVLAGHLRHHLLLQVYMAGLGAVLMLYLV 1435
             R +L  L   S + GV L   AV ++  T +             ++A ALA +G    +++V+G V A +    +++ +F+   +++  +F+   AA  F      W+  HW  P LA +RD  C   T SD                                     A+++L   + V G + V+ ++ ++A++   VR+VT+PI+MRSM S++N +      G  + G    +H  M      + + + VVG L++ ++V+G++    +   LL +Y+ GLG  L+  LV
Sbjct:    4 SRKFLRLLTLLSFSCGVSLLGLAVHIVATTDFG------------ASAAALAALGGCVVLLSVLGFVGAGRDKSRLLLLFFFADFVLVTGLFVACYAAFFFQDALESWVKHHWTAPVLAALRDTSCCV-TYSD-------------------------------------AVEYLEHRVVVIGAVGVACMLLVIASMYCVVRIVTVPIVMRSMLSVMNAVFTLLGTGLFIFGLSVKVHDEMTSGQRWIAIIFIVVGTLMVALSVLGIIGSRSKSRSLLLIYIIGLGGCLIALLV 247          
BLAST of mRNA_Ecto-sp13_S_contig1810.5572.1 vs. uniprot
Match: K3XBP0_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XBP0_GLOUD)

HSP 1 Score: 72.4 bits (176), Expect = 5.300e-10
Identity = 76/327 (23.24%), Postives = 141/327 (43.12%), Query Frame = 2
Query:  557 ERNWLIALNSFSMASGVVLAASAVSLLLFTRYEEEEADGTDSTVYSTAVALAIMGCFQTVVAVIGIVAADKVSLHMMVFYFWLVALVIGSMFMWSIAALDFHFNFRVWLDKHWDDPALANVRDRLCANGTASDQCAVPPAGFPHGSPDLWCQAKYDSDECTAIKAEAVDKAMDFLSLFMNVAGGLSVSSVVEMLAALVLTVRVVTIPIIMRSMQSMINYLLVFPVVGAIVMGY---VQSLHRPMLEVLGLVDLHYVVGALLLVVAVMGVLAGHLRHHLLLQVYMAGLGAVLMLYLVLITLGLVSWARLANGFDPDDPEGLVRIACEV 1528
             R +L  L + + ASG  L A  + + L             + ++++AVALA +G    +++ +G V A +    M++ +F+L   ++  +F+ S AA  F      WL  HW D  L  +R + C                                 C+  +         F++L     G +  + +  +LA+L   +R+VT+PI+M++M ++IN+  +F  +GA V  Y   V+S          +  +   VG  ++ ++V+GV+    +   LL +Y+ G+GA L+  L     G      LA  ++    E    +AC++
Sbjct:    4 SRRFLRFLCALTFASGAALLALGLHVAL------------SAHLHASAVALASLGGIVVLLSTLGFVGAGREKSGMLMLFFFLNFFLVTCLFVASYAAFCFQDAMESWLKHHWSDEVLDYLRSKPC---------------------------------CSTYEDTVTYLEHKFMTL-----GAIGFACIALVLASLYCVIRIVTVPIVMKNMLTVINF--IFIALGAGVFAYGLTVKSRDEMTAGQEWIAIVFITVGTFIVALSVLGVIGARAKSRTLLLIYILGIGACLLALLTCAVGGFTFSGELAKTYEKHASENS-SLACDI 277          
BLAST of mRNA_Ecto-sp13_S_contig1810.5572.1 vs. uniprot
Match: D0NLX1_PHYIT (Uncharacterized protein n=6 Tax=Phytophthora TaxID=4783 RepID=D0NLX1_PHYIT)

HSP 1 Score: 71.6 bits (174), Expect = 8.500e-10
Identity = 69/293 (23.55%), Postives = 129/293 (44.03%), Query Frame = 2
Query:  560 RNWLIALNSFSMASGVVLAASAVSLLLFTRYEEEEADGTDSTVYSTAVALAIMGCFQTVVAVIGIVAADKVSLHMMVFYFWLVALVIGSMFMWSIAALDFHFNFRVWLDKHWDDPALANVRDRLCANGTASDQCAVPPAGFPHGSPDLWCQAKYDSDECTAIKAEAVDKAMDFLSLFMNVAGGLSVSSVVEMLAALVLTVRVVTIPIIMRSMQSMINYLLVFPVVGAIVMGYVQSLHRPMLEVLGLVDLHY-VVGALLLVVAVMGVLAGHLRHHLLLQVYMAGLGAVLMLYLV 1435
            R  L  L   S   GV L   A+ +++ T +             ++A AL+ +G    V++++G + A +    +++ +F++  L++  +F+    A  F      W+  HW    LA +RD                          WC A Y               A+D+L   +   G + V+ ++ ++A++   VR+VT+PI+MRSM S++N        G  + G    +H  M      + + + VVG L++ ++V+G++    +   LL +Y+ GLG+ L+  LV
Sbjct:    4 RKCLRLLTLLSFGCGVTLLGFALHVVITTDFG------------ASAAALSALGIGVVVLSLLGFIGAGRDKSRLLLIFFFVNFLLVTGLFVACYTAFFFQDALESWVKHHWTANVLAALRDS-------------------------WCCATYSD-------------AVDYLEHRVVAIGAIGVACMLLVIASMFCVVRIVTVPIVMRSMLSVMNVAFTLLGTGLFIFGLSVKVHDEMTSGQRWIAIIFIVVGTLMIALSVLGIIGSRSKSRSLLLIYIIGLGSCLVALLV 246          
BLAST of mRNA_Ecto-sp13_S_contig1810.5572.1 vs. uniprot
Match: A0A2D4BE20_PYTIN (Uncharacterized protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BE20_PYTIN)

HSP 1 Score: 69.7 bits (169), Expect = 3.790e-9
Identity = 74/327 (22.63%), Postives = 142/327 (43.43%), Query Frame = 2
Query:  557 ERNWLIALNSFSMASGVVLAASAVSLLLFTRYEEEEADGTDSTVYSTAVALAIMGCFQTVVAVIGIVAADKVSLHMMVFYFWLVALVIGSMFMWSIAALDFHFNFRVWLDKHWDDPALANVRDRLCANGTASDQCAVPPAGFPHGSPDLWCQAKYDSDECTAIKAEAVDKAMDFLSLFMNVAGGLSVSSVVEMLAALVLTVRVVTIPIIMRSMQSMINYLLVFPVVGAIVMGY---VQSLHRPMLEVLGLVDLHYVVGALLLVVAVMGVLAGHLRHHLLLQVYMAGLGAVLMLYLVLITLGLVSWARLANGFDPDDPEGLVRIACEV 1528
             R  L A+ + ++A G  L A  V + L    +            ++A ALA +G F  + +++G V A +    +++ YF+L   +   +F+ S AAL F  +   WL +HW  P L  +R + C +                                        +  + +L     + G +  + +  +LAA+   VR+VT+PI+M+++ +++N  ++F V+GA +  Y   V+S          +  L  V+G  +  ++V+G++    +   +L +Y+ G+G  L+  +V          RLA  +D +      RIAC++
Sbjct:    4 SRKVLRAICALTLAGGAALLAIGVHVSLTAHLQ------------ASAAALASIGAFVVLFSLLGFVGAGRDKSQLLMLYFFLNFFLATCLFLSSYAALSFQHSLESWLKRHWGHPVLDYLRAQPCCH--------------------------------------TYETTVAYLENQFVLLGAVGFACLALVLAAMYCVVRIVTVPIVMKNLLTVLN--VIFIVLGAGLFTYGGVVKSKDELTSGQDWIAVLFIVIGTFIFALSVIGIIGSRSKSRTMLLIYIVGIGGCLVALIVCAGAAFSFSDRLAAQYDANLHTS--RIACDI 276          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1810.5572.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D7G5S3_ECTSI6.330e-6286.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G5S4_ECTSI1.360e-6099.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2R9T0_9STRA6.850e-2630.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A8K1C801_PYTOL1.200e-1124.47Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A3F2RM06_9STRA4.150e-1125.85Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
H3GVR1_PHYRM1.260e-1024.83Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A2P4WWC0_9STRA2.980e-1024.83Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]
K3XBP0_GLOUD5.300e-1023.24Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
D0NLX1_PHYIT8.500e-1023.55Uncharacterized protein n=6 Tax=Phytophthora TaxID... [more]
A0A2D4BE20_PYTIN3.790e-922.63Uncharacterized protein n=2 Tax=Pythium insidiosum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1810contigEcto-sp13_S_contig1810:15..8286 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score83.2
Seed ortholog evalue2.6e-13
Seed eggNOG ortholog35128.Thaps21053
Model size1534
Hectar predicted targeting categorysignal anchor
Exons11
EggNOG OGs2ENZU@1,2SSAB@2759,2XCWZ@2836
Cds size1035
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1810.5572.1prot_Ecto-sp13_S_contig1810.5572.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1810 15..7787 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462934.7987494-CDS-Ecto-sp13_S_contig1810:14..1581681462934.7987494-CDS-Ecto-sp13_S_contig1810:14..158Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1810 15..158 -
1681462934.810147-CDS-Ecto-sp13_S_contig1810:666..7951681462934.810147-CDS-Ecto-sp13_S_contig1810:666..795Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1810 667..795 -
1681462934.8202534-CDS-Ecto-sp13_S_contig1810:1361..14341681462934.8202534-CDS-Ecto-sp13_S_contig1810:1361..1434Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1810 1362..1434 -
1681462934.8309379-CDS-Ecto-sp13_S_contig1810:2413..25471681462934.8309379-CDS-Ecto-sp13_S_contig1810:2413..2547Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1810 2414..2547 -
1681462934.8411922-CDS-Ecto-sp13_S_contig1810:3493..36731681462934.8411922-CDS-Ecto-sp13_S_contig1810:3493..3673Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1810 3494..3673 -
1681462934.8504581-CDS-Ecto-sp13_S_contig1810:4207..43121681462934.8504581-CDS-Ecto-sp13_S_contig1810:4207..4312Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1810 4208..4312 -
1681462934.8587475-CDS-Ecto-sp13_S_contig1810:4788..48271681462934.8587475-CDS-Ecto-sp13_S_contig1810:4788..4827Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1810 4789..4827 -
1681462934.8755262-CDS-Ecto-sp13_S_contig1810:5428..55101681462934.8755262-CDS-Ecto-sp13_S_contig1810:5428..5510Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1810 5429..5510 -
1681462934.889649-CDS-Ecto-sp13_S_contig1810:6187..62501681462934.889649-CDS-Ecto-sp13_S_contig1810:6187..6250Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1810 6188..6250 -
1681462934.898831-CDS-Ecto-sp13_S_contig1810:7070..71151681462934.898831-CDS-Ecto-sp13_S_contig1810:7070..7115Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1810 7071..7115 -
1681462934.9082267-CDS-Ecto-sp13_S_contig1810:7746..77871681462934.9082267-CDS-Ecto-sp13_S_contig1810:7746..7787Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1810 7747..7787 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462934.925246-UTR-Ecto-sp13_S_contig1810:7787..82861681462934.925246-UTR-Ecto-sp13_S_contig1810:7787..8286Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1810 7788..8286 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1810.5572.1

>prot_Ecto-sp13_S_contig1810.5572.1 ID=prot_Ecto-sp13_S_contig1810.5572.1|Name=mRNA_Ecto-sp13_S_contig1810.5572.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=345bp
MVLFPRTFDAVRWRYWCSNERNWLIALNSFSMASGVVLAASAVSLLLFTR
YEEEEADGTDSTVYSTAVALAIMGCFQTVVAVIGIVAADKVSLHMMVFYF
WLVALVIGSMFMWSIAALDFHFNFRVWLDKHWDDPALANVRDRLCANGTA
SDQCAVPPAGFPHGSPDLWCQAKYDSDECTAIKAEAVDKAMDFLSLFMNV
AGGLSVSSVVEMLAALVLTVRVVTIPIIMRSMQSMINYLLVFPVVGAIVM
GYVQSLHRPMLEVLGLVDLHYVVGALLLVVAVMGVLAGHLRHHLLLQVYM
AGLGAVLMLYLVLITLGLVSWARLANGFDPDDPEGLVRIACEVS*
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mRNA from alignment at Ecto-sp13_S_contig1810:15..8286-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1810.5572.1 ID=mRNA_Ecto-sp13_S_contig1810.5572.1|Name=mRNA_Ecto-sp13_S_contig1810.5572.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=8272bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1810:15..8286- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGCAGAGTGCAAACAGCAGCGAGGCTTCCTTGCAGAGTTGCGGAGGTAG CATACAGCGAGATCGACCGGTATTTGGCCAGCATTCAGCATATTTGGCTG CTGGCGTATTTTTCTGCGACGTAGACCGCCTTGGCCCGCAGCCTCTGCCG ACATCACGAGATATATCCGTAACTTCTAGACCAAGGCGGTTGGTGTCTAG CAGACTCCAACATCTACATGCGGGCTTTACTTGTAGGGTAGATAGTTGAC AGCGACAGACGTGGGCCGTCGTCGACAGCAGGAAGTAGGTCAGAGTGCGA GGGTGGGTTCTGCGCTCACACGGGCCTGGGAAAGCCGGTTCCTCGAGCTT CGTTGCACTGGTCAAGCACTTGGTTGGCGCCATTGGTTAGAGCCGGTTTT CTGAAGGTTTGGAGTTCGAGACTCCGAGGTCAAGAGCCAAGCGAGCGGTG CGGAGCTGGGTAGGGGTAGCAACCCCAGCCCTGACATCGGACATCGGACA TGGTGCTTTTCCCGAGGACTTTCGATGCAGTGCGATGGAGGTAAGGTTGT CCACGCAATCGGCATCATTCGCGTCGCGCCTATTAACTCGTCTGTGTTGT GCGGCAGACTGACACCGTGCGTTGGTGATTCAGCGCATTGAGGGTATCGA ACACTCTCCTCTCTCCTTCCTGTGAACTAGGCTTGCACGACCGCTCCTCG TGTTGATCGCCCAGACGCGCAACGTGGGCGTTCTTCATGGATGCGATCAT GCATGTCATTGCTGCCGCCTTCTTGTGCAAGCTGACTAGACTACAAAGAT ACGATGCACAGCAGCAGTCTGAACTGTCCGAGGTTGATGTTGCTGACTCC AACTATGTGAACACCCGGTTGAACCTAAACCCGGCGTTCTTCTTTGTGGC AATCACTGCGCCCGCCATTTCTGTCGATCGCTTTGTAGTCTTCGGGCCGA GATCCCGCCTTCCCTACCAAAAATTTTCGTTGTCGTCTCAGCTAAAAACC CGGTCCAAAATCCACCGTAGGCGACATGCCACTAGAAATCACACCCCCAG GACCGCTTTTGAAAGCTCGACCACTCCACGACGAAGAGGATGCACAATTA GGGGCATAAAATGAGCAATATCGCCATACCGTCGGAATCAATCATGATCG TGTGTAATCCGCTCCCAACAGGTATTGGTGCAGCAACGAACGGAATTGGC TCATCGCTCTCAACAGGTGCGGAGTGGCAAGTACCCCGGCGTCCGGCGGC TACGCATATCATAGCAACACCAAAACAACACCAAGTAGCCTCTGCGAGAA TGCCGCATGCGGGAAGGCATGCATGCTGTCCGCCTGCGGCTTGCACGGGC GCGGGCTTGTGTCGCTTTCATGTGTGTGCGTGTCTTGTTGTCCCGATCCA TTCTGGGTACCAATGTACGCATTCGGTATTCGTTTGACGTTCAAAGCGGG GTCACACAGGAGGAGGGAAAATACGGGAGAGCCGTTTTTTTTCCCGTCGT TTCCCCTGCCGCGCGTTCCTTCGATATTTTACGCGAAAAGGGCGCGGCAG CCCCTTCCCTCCTTATTGCGTGTACTTTCGAATGACTACGGTCCCACGTA CGCATGAATTGGTTGTTTTTTTTTTTCTGCGGTGTGGGTGTTCTGGGCTT TGTCAAATCAAAGGGCAGGAGTAGATCAACGCGTGTTTACCGATACACTC AGCATGTTGACAGATACACTCAGCACCAATCAGCCTTGATTTTGTGTCTT TATAGTTGCGCAACTCGTTTGGACGATCCTCTGTGTGGCGTTGACGTCCG TGGACGACGAATGAAGCTGGCATCTGGCCGACAACACGCACGTAGACTAG GCTTCCCAGTCTGGAGGGACAACTGCGGGTGTGACAACAGCGAATCTTCT GAGCTTGGTTTGTCTGCTGTCTCCGGACAAAAGCATGAACACCATCACCC ATCACCTCATTCTTCTGTTTACCCCCCCCTGCACTTGTTTTTTCTTGGTG TGCACCTCGTGGGCTGCTGCTGCTGCGCACCTCCAGCTTTAGCATGGCCT CTGGCGTGGTCTTGGCAGCTTCTGCTGTGTCGCTGCTGTTGTTTACGAGG TGATTTCGACTCGTTTCAAAATAGAGAGGTTGGAAGTATCCCGTAGAGAG CGGAAAGTGTCTAGCGATTGGGTGGCGAGCTCAACCGCAACAACTTCTGG GAATGTCGAGGGGTAACCGTGCAACAGCAGGACCTTCGTCCGAATACATG ACCCTCCTCCGTTAAGTTAAGGAGTATTGTAGTCTTGAGGTTTCGCACTC CTGTTTTACTTTGATGGCACACCTACTGTCCTTCTGTGTTTACGATCGAA CGTGCGGTGTGCAGGTGCGTACGGCTCATCGTGCTTCGAGAGCTTTGTGA TACCTTTTCATGTCTTCCTTTTTTTTTCGAGAAGTAACCCGGGGTTGATA AGGTGGCGACGGTGGTACGGTGCTACAATATACTTGTGTTTAGTGTCAAT TATGACGGCTTTCTGATACGATACTTCTAGTCTTTGAAGAGAGATGATTT CGTTGGTGTGGAATTTTGCTCAGATGACATGGTACCGTATGATACCATGG TATTGTTTGTCTATGGAGTCCGAAGGTCTGCCATCCGATTGTTCCCCGAT TGTTAACTGGAGGACGATGAGGCGGTGGCTCGAACTTATTCATGACGGTG GTAAGGATTAGCTTCTGAATTTGAGTGATGTTATTTCGGTCTGATGTGTT ATCCACTTGACGGTTGTGTCTGGTAGGTACGAGGAAGAAGAGGCGGACGG GACAGATAGCACCGTGTACAGTACTGCGGTGGCTTTGGCCATCATGGGAT GCTTTCAGGTGCGAAAAGCGTTTGACGTCCTCGCTTTATGTATACACCTA CTGTCTCGGTTTGCATGCGGCTGTGCTCTCTCGAGAGCTCGTACAAAAAA TTGTTGCCTTGAAGACATAATTATTGTGGTGTCTGTTGCCACCATGCGTT TTGCGCCAAAACATTTGGTCGCCGTTGCTTAGGTCTGCTGCAAGTACATC AGAAATAGCTCGCTCCTTTCCACATAGGGCTCCATTATGTTTTGCGTTTT GCGGCATCAAACCAATCCTTCGTGCCCACGCGAAACGCTGATGCAGAAGG TGCAGGTCTACACTCCCAGACTGAACGTACCATACAATGTCTACCATGAT CTCGTACACCATGCACCGTGAACGGCGAACCGTGAACCGCGAACCCTATT CCGCGCGCCGAACCGTGTACCGTGCACTATGTACGGCGAACATCCCACCC TAGTTACCCATCTCTTGACGATTCCGGAAAGCCATCGTGGCGCGGCCTGA CATGCTTCCGTTTGCTGCCTGTGCCTGCCTCTGTCGTTGTTCCCCCCTGC TGGCTGGTGTCGCGGGGCTGCTGCCTCCTGTTACCACTCTTGCCTCTTGG CTGGTCCAGACGGTCGTGGCGGTAATAGGGATAGTAGCTGCCGATAAGGT ATACTCTTATGGTTGATTGGTCGATGAATTCCTTGGCTGGTTGTGGCCTA GCCTAGCGTCGAGATGCTGTCTTGCGGTCGGTCTTGGAGCTAGGTTCGCC TTTTGGAACATCCAAAGCCGCGGAGAAGGCTTTACGACTACGCCTAAGCT GACTTTTCTCCACACCCGTTCAGTTTCTGCTTCGGCCCGTGCAAAAAACA GACTAACCATTGGTGAGATTTAACGCCATGAGCTGGTTTAGATCTCGACC CTCTTCGGTTTTTCCGGGTGTCTTTGCCCCTGTCGGAGCCCGAAGTCCGA TGTCGAGGTTTGTATGAACTTGCCGCTGTTGTTGAAAGAGTGATATCCTT GGCGTCCAGGGTACCGTTTCTCCCGCGCTGGCGTTTTTGTCCCCGTCAGG GACTCCGTGCTATAATTTTTTTCACCCTACGGTATGTCCCCATGTTTCCA CCCACGTGGTCGACAATCCCGCAGGTGAGCCTACACATGATGGTGTTTTA CTTCTGGCTAGTGGCGCTGGTGATCGGGTCGATGTTCATGTGGAGCATCG CAGCCTTGGACTTCCACTTCAACTTTAGGGTACGCGAGGCGTGTTTTGGG TGTTGTAGGGCAGTGAATGTGTGGCTGGCGGCATCGAACTACTGCGTTGT GCGGAATGTCTGCCTCGTGCGCTTGTGTTGGCCTTGTGTTACGTAGTGGG TTTCGCGTGTCCGTTATGATGGAATTTGTCTTTTGCCGGAAACCGATCTT TTAGGTTTGTGTCTCATGTGTTTGCTGGGCGCAAGTGTACCTACATCTTT AGGGACAGCAGGGGCCTCACACAGAGGGGGAATCCTCTTAGTCTCTTCCT CCTTCTGTTCTTGTATGCGTACACTGCCGTTCAGGATCGTGCCTAGCAAG CTCTGAATCGTGTGCGGTATGACTCTGGCTCTTTTGAGAATGTTTGTTTT CCTGTCATCTTTGTCTTTCTGGGTGGTGTCTTTTCGTCCGTCCGAACTGT GTGCACTCCCACCGTGACATCTCCCGTATGGTGTCCCATTCTGACCCTTC TTCGTACTATTGCACCTTTTTTCTGTCAATCATCCCACCCTGCCCTTCCT GCGACCGGGAAAGGTATGGCTGGACAAGCACTGGGACGACCCTGCCCTGG CAAACGTGCGAGATCGGCTGTGCGCGAACGGGACCGCCAGCGATCAATGC GCGGTGCCCCCGGCGGGGTTCCCCCACGGGTCTCCGGACTTGTGGTGTCA GGCCAAGTACGACTCGGACGAGTGCACGGCGATAAAGGCGGAGGTAGGCA TGGCCGTCTGCGTGTCGAATCTACGGGGCCGCCCTCCGGTGAACACTTTT CCTCGTGTTTTCTGATATTTGACGGTGTGTGGCATCAGCTGTACACAGCG GCAGGGGCAACATGTAAGGTTTGAGAGAGGGTCCGCTGCCAAAGCATCCT AAATCTACTATTCTTGCTCCCAAACCTTTCTCCGAAAACGAACCTGTACT AGCTTCCATAAACCTGTACCTCTCATAATGCCGTGGGTCACTTTTTGATC ACAAAAGAAAAGTGTACCTGCGGTTGTTGCGCATGGCGCACTCCGACGCG TTGCATAGCACCATGGCAAGGTGAAGAGTGAGACGGTGTCATATTTCAAG ACCACCTGTCGCTTACGTTCCAATGTTAAACCTTCCACCCTGTGGTTCGA GATCTCACATTCTGGAATCCTTTCGTTCTGATGATGGTTTGTCAACAAAA TGTTTTGCGTCCCTTCAGGCCAATATTTCTAGGCTGATGCCTTCGTTCAA AACGATGCTGAAGAAGCGTGAGGCACGAAGCAACTGGCGGTAGATAAAGC GCAGCAACCGGTTGACGGTTTCAACAAACCGCTCACGGCTATCATGTCGC TCACCTCTTTTGTGTGTGTGCGTGTGTTATTTTCCAACAACGAGTGGAAT ACGTGCTACCATGAACTTTTGCAAACGATCGCGGCCAGTATTTTTCTCGC CTTCGTTTTCTCTTTTCCTTTTTGAGTGTGTGTGTTTGTTTCCAGCAGCT TGTTGAGTTTTCGCTCCGATGAACCTTTGCAACCGATCACAGCCAAAATC TCCGTCGTCCAACAACTTGTTGAACATTTCGCGGTGATGATGTCCTACGA ACGCTCACAGCCATCGTTTCGCGTACCGTTGGGTGTGTGGCGAGTCCAAC AGCTTGTGTAACGTTTTCGCACCGCCGAACCTCTTGCAGGCGGTAGACAA GGCCATGGACTTCTTGTCTCTTTTCATGAACGTGGCGGGAGGACTGTCGG TGTCCAGCGTGGTGGAGATGTTGGCGGCTCTTGTGCTCACCGTCAGAGTG GTAACAATTCCCATCATCATGAGGTGAAAAAGGTAGCTCAGCAGACGTAT GCACCCGCATCTTTAGGGGTTTGTACAGTAGGGGTGCGCTGGTCAAATCA GGCATGCCGTGCCTAAGAGTGCTTGATTGGTACGTATCCGGGTCTACACG GCATTCTCCCTACGATGTGAATGCAGTTCTTCTCGAATGCTGAGACTGCT GTGAGTAAAACCTGCTTGTTTTTTTGCACATTTTCTTTGAGTCATGGGTA CGTGAACCGGTTCCCTTGCCCTGGAGAGCATGAAAGACGACGGGGGGGCA CAGGCTAGAAAGATGCCAGAATGATTTTTACTGGAAGGCAACAACAGCCG TACAATACCATCTTCTCAGCCCGTTTACGTCTGGTAGCATTGTGAGGTAA AGGTTAGTCTTCGTCTTTGACTTGTAGGTTCGTTCCTTCTCACCTATGCA GCGCCGCCCGCCATAGCTGGCTGACTATGAAATTGAAAACGACAACCAGG TTGCACAGCCCGCCTTCCGACATCAAAGCACCGGAATGGGTCGGTGAACA CACACCGCGTTTCGGGGTTCCCCCTTTTCTACCATTTTTGCTTACCACAT CGCATTTTTTCTCTTTGCTGGAGTGAGTGAATTAACGCTTAACGAACAGC AGAGGCAACACCATGAACACTAGCATCATGAATGGACCAATAGGGATGTT GATGTTCGACTCGGTAATTCACTTGGGCGTCCGGGTTTGCTCCTGTGGGC GGAATCGAGATTTTATTACCTTGTGCGAAAGGAAAGTGAGAACATCGTTG GTTACCGTGAAGCGTGTACTTGCTGCTGCAGTTGGTCACCACCGCAAAAG CGCCGTGAATTTGCTAGTGTCGGGGAGACATCGCAGAGGTACACTCACTC TGCCTGCTCAGGTATCATTCTCATTCTAGTCTCTGTAGGCGAGATGTCCT GACGGCTCCACTATCACAACTCTGCTTGTTCTTTCTGTGCCCGGTTGCCC AGATCGATGCAGAGCATGATCAACTACCTTCTCGTCTTTCCGGTGGTGGG GGCAATCGTCATGGGATACGTGCAGGTGATGACGCCTTACCCTATCGCGT GTGGGGGTCATTGTTCAGTGTAGGCTGTTTTGGTTTGTTGGTTCTGATGG ATGTCCGACCCTTGTGCGCTGCCCTCAGCCGTCACATGTGACGATAGATA TGTCAATAATAGTTGCTGCAACGCGTGCGCCATGTTTGACATTAGCGAGA GTTTGTTTTTTAGAAATAGGTCTTGGCAGATGAGAAAGAATTGCGCAGTT AGATGTCTCGCGTTCGAGGGTTTTGGACCCTTAGCCCTACGTCATTTCGT GTGGTCTGCTGTCTGTAGGTTGTTTTGGTCGTGACAGAAGCACGAAGGTG GTGCGGACGACGCAAGCTTCGACGGATCACACAAAGCCGATACAATGGGG ACTGCTTAGTGTTGGTGTAGTATGTACCCAGAGAGTCTACCGGCACAATA CCGGACACCGGCTGTAAACAGCCCCCCCCCCGTTGTCACATAGTTGCGGT ACTGGTATAAACGGCAAGTATTTCCCTGCTTGGGTGCCGCCATCGTCGCT CTCAACCCCACTCGCGGATGTCACATTTTCCGTGTGCGCAGTCTTTGCAT CGTCCGATGCTGGAGGTCCTGGGTCTGGTGGACCTGCACTACGTCGTGGG GGCCCTGCTGCTGGTAGTAGCGGTGATGGGGGTGCTGGCGGGGCACTTGC GTCATCACCTCCTGCTGCAGGTGCGGTGGCCCGCCTGTCTTGCCTACGGC TGTCCGCGGTAGTGACTGGTGCACGTTGTTGGTTGTTGGTTGTTGGTTGT GGTGCTGGTGGTATTGGTGGTCGCTGGTGATGTTTTTGCTTGGCTGCCCT AAATTTCCCTCTCGCTCTATAGCCGGAATAGAAACGTCAGATCTGTAGCC GTCTTTTCAGCCCTGTTGGATGCTTTGTTTTCTGTTACGTGGTTGGTTTG CTCTCTCTTTCTCGCTCTCTCTTGCGTAAATTATCAGCTGATGCAACGCA GCATTGGGGATTACCTCCATTGAGCTTGCTCATTATCCATGGGCGGTGCT TCGTCTTCCTTGCTAGAGCCAGAGCGAAACACCCATCACGAAACAGCCAG CCTTTCCTCTATACCGGCAGGAGGCGGGAGGGGTACAATCATACATATCC TTGATATTCTGGTGCCGAATCGTCCCCTCTCGGTGTGGTTGGTGTTGTGT TGATATCATCCCGGTCTGTCTCACCCAGGTGTACATGGCAGGTCTCGGTG CCGTCCTGATGCTCTACCTGGTCCTAATCACGTTGGGCCTAGTCTCGTGG GCGAGGCTCGCGAACGGCTTCGACCCCGACGACCCTGAAGGGCTGGTTAG GATAGCGTGTGAGGTGAGCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1810:15..8286-

>mRNA_Ecto-sp13_S_contig1810.5572.1 ID=mRNA_Ecto-sp13_S_contig1810.5572.1|Name=mRNA_Ecto-sp13_S_contig1810.5572.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1035bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1810:15..8286- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGCTTTTCCCGAGGACTTTCGATGCAGTGCGATGGAGGTATTGGTG
CAGCAACGAACGGAATTGGCTCATCGCTCTCAACAGCTTTAGCATGGCCT
CTGGCGTGGTCTTGGCAGCTTCTGCTGTGTCGCTGCTGTTGTTTACGAGG
TACGAGGAAGAAGAGGCGGACGGGACAGATAGCACCGTGTACAGTACTGC
GGTGGCTTTGGCCATCATGGGATGCTTTCAGACGGTCGTGGCGGTAATAG
GGATAGTAGCTGCCGATAAGGTGAGCCTACACATGATGGTGTTTTACTTC
TGGCTAGTGGCGCTGGTGATCGGGTCGATGTTCATGTGGAGCATCGCAGC
CTTGGACTTCCACTTCAACTTTAGGGTATGGCTGGACAAGCACTGGGACG
ACCCTGCCCTGGCAAACGTGCGAGATCGGCTGTGCGCGAACGGGACCGCC
AGCGATCAATGCGCGGTGCCCCCGGCGGGGTTCCCCCACGGGTCTCCGGA
CTTGTGGTGTCAGGCCAAGTACGACTCGGACGAGTGCACGGCGATAAAGG
CGGAGGCGGTAGACAAGGCCATGGACTTCTTGTCTCTTTTCATGAACGTG
GCGGGAGGACTGTCGGTGTCCAGCGTGGTGGAGATGTTGGCGGCTCTTGT
GCTCACCGTCAGAGTGGTAACAATTCCCATCATCATGAGATCGATGCAGA
GCATGATCAACTACCTTCTCGTCTTTCCGGTGGTGGGGGCAATCGTCATG
GGATACGTGCAGTCTTTGCATCGTCCGATGCTGGAGGTCCTGGGTCTGGT
GGACCTGCACTACGTCGTGGGGGCCCTGCTGCTGGTAGTAGCGGTGATGG
GGGTGCTGGCGGGGCACTTGCGTCATCACCTCCTGCTGCAGGTGTACATG
GCAGGTCTCGGTGCCGTCCTGATGCTCTACCTGGTCCTAATCACGTTGGG
CCTAGTCTCGTGGGCGAGGCTCGCGAACGGCTTCGACCCCGACGACCCTG
AAGGGCTGGTTAGGATAGCGTGTGAGGTGAGCTGA
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