mRNA_Ecto-sp13_S_contig18042.5538.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig18042.5538.1 vs. uniprot
Match: D7FRV7_ECTSI (Transcriptional adapter n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRV7_ECTSI) HSP 1 Score: 159 bits (401), Expect = 4.610e-44 Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 1
Query: 10 LCYIRCAECKDVVDLCVSCFFSGSEPRQHKKTHSYRVMDKLHKPIYSEGWTAVEELALADLTRKRGLGAWEAIADL 237
LCYIRCAECKDVVDLCVSCFFSGSEPRQHKKTHSYRVMDKLHKPIYSEGW+AVEELALADLTRKRGLGAWE IADL
Sbjct: 23 LCYIRCAECKDVVDLCVSCFFSGSEPRQHKKTHSYRVMDKLHKPIYSEGWSAVEELALADLTRKRGLGAWEEIADL 98
BLAST of mRNA_Ecto-sp13_S_contig18042.5538.1 vs. uniprot
Match: A0A6H5JL08_9PHAE (Transcriptional adapter n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JL08_9PHAE) HSP 1 Score: 119 bits (297), Expect = 1.780e-29 Identity = 53/75 (70.67%), Postives = 60/75 (80.00%), Query Frame = 1
Query: 10 LCYIRCAECKDVVDLCVSCFFSGSEPRQHKKTHSYRVMDKLHKPIYSEGWTAVEELALADLTRKRGLGAWEAIAD 234
LCYIRC ECK VDLC +CFF+G EP HKKTHSYRVMDKL KPI++E WTA EEL+L D +K GLGAWE I+D
Sbjct: 60 LCYIRCEECKQEVDLCAACFFAGMEPLGHKKTHSYRVMDKLDKPIFTEDWTAAEELSLMDQVKKMGLGAWEEISD 134
BLAST of mRNA_Ecto-sp13_S_contig18042.5538.1 vs. uniprot
Match: A0A4D8XTF3_9ALVE (Uncharacterized protein n=1 Tax=Perkinsus sp. BL_2016 TaxID=2494336 RepID=A0A4D8XTF3_9ALVE) HSP 1 Score: 74.3 bits (181), Expect = 8.780e-14 Identity = 37/71 (52.11%), Postives = 45/71 (63.38%), Query Frame = 1
Query: 19 IRCAECKDVVDLCVSCFFSGSEPRQHKKTHSYRVMDKLHKPIYSEGWTAVEELALADLTRKRGLGAWEAIA 231
IRCAEC++ DLC+ CF G+E HK+THSYRVM+KL + S WTA EEL L GLG W +A
Sbjct: 58 IRCAECQEF-DLCLDCFSVGAEISSHKRTHSYRVMEKLDFSVLSSDWTAHEELMLLQALDLYGLGNWVEVA 127
BLAST of mRNA_Ecto-sp13_S_contig18042.5538.1 vs. uniprot
Match: A0A3P3Y5Z7_PLABS (Uncharacterized protein n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3Y5Z7_PLABS) HSP 1 Score: 71.6 bits (174), Expect = 9.120e-13 Identity = 35/82 (42.68%), Postives = 51/82 (62.20%), Query Frame = 1
Query: 4 SQLCYIRCAECKDVVDLCVSCFFSGSE-----PRQHKKTHSYRVMDKLHKPIYSEGWTAVEELALADLTRKRGLGAWEAIAD 234
SQ ++C EC D + LCV CF SG+E H+KTHSYRV+D++ I+ E WTA +EL L + + G+G W+ +A+
Sbjct: 896 SQSIRVKCCECTDFI-LCVYCFASGAELLVDDQNMHRKTHSYRVIDRVTASIFDEDWTADDELMLLEGIERYGMGNWQDVAN 976
BLAST of mRNA_Ecto-sp13_S_contig18042.5538.1 vs. uniprot
Match: F4P659_BATDJ (Uncharacterized protein (Fragment) n=1 Tax=Batrachochytrium dendrobatidis (strain JAM81 / FGSC 10211) TaxID=684364 RepID=F4P659_BATDJ) HSP 1 Score: 71.2 bits (173), Expect = 1.140e-12 Identity = 34/72 (47.22%), Postives = 43/72 (59.72%), Query Frame = 1
Query: 19 IRCAECKDVVDLCVSCFFSGSEPRQHKKTHSYRVMDKLHKPIYSEGWTAVEELALADLTRKRGLGAWEAIAD 234
I+CA C D DLCV CF G+E + HK H YRV++ L PI+ W A EEL L + G+G WE I+D
Sbjct: 18 IKCAICPDF-DLCVECFSCGTELKDHKSDHDYRVLEMLDFPIFESSWGADEELLLVEGLELHGVGNWEQISD 88
BLAST of mRNA_Ecto-sp13_S_contig18042.5538.1 vs. uniprot
Match: A0A1S8W801_9FUNG (Transcriptional adapter 2 n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8W801_9FUNG) HSP 1 Score: 69.7 bits (169), Expect = 4.180e-12 Identity = 33/72 (45.83%), Postives = 43/72 (59.72%), Query Frame = 1
Query: 19 IRCAECKDVVDLCVSCFFSGSEPRQHKKTHSYRVMDKLHKPIYSEGWTAVEELALADLTRKRGLGAWEAIAD 234
I+CA C D DLCV CF G+E + HK H YRV++ L PI+ W A EEL L + G+G WE ++D
Sbjct: 45 IKCAICPDF-DLCVECFSCGTELKDHKADHDYRVLEMLDFPIFEADWGADEELLLVEGLELHGVGNWEQVSD 115
BLAST of mRNA_Ecto-sp13_S_contig18042.5538.1 vs. uniprot
Match: A0A1Y1W9F9_9FUNG (Transcriptional adapter 2 n=1 Tax=Linderina pennispora TaxID=61395 RepID=A0A1Y1W9F9_9FUNG) HSP 1 Score: 67.4 bits (163), Expect = 2.720e-11 Identity = 36/82 (43.90%), Postives = 50/82 (60.98%), Query Frame = 1
Query: 19 IRCAECK--DVVDLCVSCFFSGSEPRQHKKTHSYRVM------DKLHKPIYSEGWTAVEELALADLTRKRGLGAWEAIADLV 240
IRC EC+ + DLC +CF G E +HKKTHSYR++ ++ PI++E W+A EEL L D R+ G+G W A+ V
Sbjct: 25 IRCHECEKFEEFDLCAACFAKGIEIGRHKKTHSYRIVRAWQLIEQHRFPIFTEDWSADEELLLIDGLRQFGMGNWRDAAEHV 106
BLAST of mRNA_Ecto-sp13_S_contig18042.5538.1 vs. uniprot
Match: A0A2G5BFS6_COERN (Transcriptional adapter 2 n=1 Tax=Coemansia reversa (strain ATCC 12441 / NRRL 1564) TaxID=763665 RepID=A0A2G5BFS6_COERN) HSP 1 Score: 67.0 bits (162), Expect = 3.710e-11 Identity = 34/74 (45.95%), Postives = 45/74 (60.81%), Query Frame = 1
Query: 19 IRCAECKDVVDLCVSCFFSGSEPRQHKKTHSYRVMDKLHKPIYSEGWTAVEELALADLTRKRGLGAWEAIADLV 240
I C EC + DLC +CF G E HK HSYRV+ + PI++E W+A EEL L D R+ G+G W+ A+ V
Sbjct: 37 ISCNECPEF-DLCTTCFSRGIELGSHKNDHSYRVVTRHRFPIFTEDWSADEELLLIDGLRQFGMGNWKDAAEHV 109
BLAST of mRNA_Ecto-sp13_S_contig18042.5538.1 vs. uniprot
Match: A0A4P9ZPH0_9FUNG (Transcriptional adapter 2 n=1 Tax=Dimargaris cristalligena TaxID=215637 RepID=A0A4P9ZPH0_9FUNG) HSP 1 Score: 66.2 bits (160), Expect = 6.900e-11 Identity = 34/74 (45.95%), Postives = 45/74 (60.81%), Query Frame = 1
Query: 19 IRCAECKDVVDLCVSCFFSGSEPRQHKKTHSYRVMDKLHKPIYSEGWTAVEELALADLTRKRGLGAWEAIADLV 240
IRCAEC D D CV+CF G E HK H Y+V+ PI++E W+A EEL L + ++ G+G W IA+ V
Sbjct: 27 IRCAECPDF-DTCVTCFSQGIELGPHKNNHKYQVVTPNFFPIFTEDWSADEELLLIEGIQQFGMGNWMDIAEHV 99
BLAST of mRNA_Ecto-sp13_S_contig18042.5538.1 vs. uniprot
Match: C3YVY8_BRAFL (Uncharacterized protein n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3YVY8_BRAFL) HSP 1 Score: 64.3 bits (155), Expect = 3.000e-10 Identity = 30/75 (40.00%), Postives = 44/75 (58.67%), Query Frame = 1
Query: 16 YIRCAECKDVVDLCVSCFFSGSEPRQHKKTHSYRVMDKLHKPIYSEGWTAVEELALADLTRKRGLGAWEAIADLV 240
+I+CA+CK V LC+ CF G E H+ H Y ++ P++ GWTAVEEL L + G+G W+ I++ V
Sbjct: 24 FIKCAQCKPPVLLCLQCFARGFEKSGHESDHRYEIITN-EFPVFDLGWTAVEELKLLEALGDCGIGNWQEISNNV 97 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18042.5538.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 22
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig18042.5538.1 >prot_Ecto-sp13_S_contig18042.5538.1 ID=prot_Ecto-sp13_S_contig18042.5538.1|Name=mRNA_Ecto-sp13_S_contig18042.5538.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=80bp TSQLCYIRCAECKDVVDLCVSCFFSGSEPRQHKKTHSYRVMDKLHKPIYSback to top mRNA from alignment at Ecto-sp13_S_contig18042:16..1116- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig18042.5538.1 ID=mRNA_Ecto-sp13_S_contig18042.5538.1|Name=mRNA_Ecto-sp13_S_contig18042.5538.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1101bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18042:16..1116- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18042:16..1116- >mRNA_Ecto-sp13_S_contig18042.5538.1 ID=mRNA_Ecto-sp13_S_contig18042.5538.1|Name=mRNA_Ecto-sp13_S_contig18042.5538.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=240bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18042:16..1116- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |