mRNA_Ecto-sp13_S_contig18042.5538.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18042.5538.1
Unique NamemRNA_Ecto-sp13_S_contig18042.5538.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig18042.5538.1 vs. uniprot
Match: D7FRV7_ECTSI (Transcriptional adapter n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRV7_ECTSI)

HSP 1 Score: 159 bits (401), Expect = 4.610e-44
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 1
Query:   10 LCYIRCAECKDVVDLCVSCFFSGSEPRQHKKTHSYRVMDKLHKPIYSEGWTAVEELALADLTRKRGLGAWEAIADL 237
            LCYIRCAECKDVVDLCVSCFFSGSEPRQHKKTHSYRVMDKLHKPIYSEGW+AVEELALADLTRKRGLGAWE IADL
Sbjct:   23 LCYIRCAECKDVVDLCVSCFFSGSEPRQHKKTHSYRVMDKLHKPIYSEGWSAVEELALADLTRKRGLGAWEEIADL 98          
BLAST of mRNA_Ecto-sp13_S_contig18042.5538.1 vs. uniprot
Match: A0A6H5JL08_9PHAE (Transcriptional adapter n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JL08_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 1.780e-29
Identity = 53/75 (70.67%), Postives = 60/75 (80.00%), Query Frame = 1
Query:   10 LCYIRCAECKDVVDLCVSCFFSGSEPRQHKKTHSYRVMDKLHKPIYSEGWTAVEELALADLTRKRGLGAWEAIAD 234
            LCYIRC ECK  VDLC +CFF+G EP  HKKTHSYRVMDKL KPI++E WTA EEL+L D  +K GLGAWE I+D
Sbjct:   60 LCYIRCEECKQEVDLCAACFFAGMEPLGHKKTHSYRVMDKLDKPIFTEDWTAAEELSLMDQVKKMGLGAWEEISD 134          
BLAST of mRNA_Ecto-sp13_S_contig18042.5538.1 vs. uniprot
Match: A0A4D8XTF3_9ALVE (Uncharacterized protein n=1 Tax=Perkinsus sp. BL_2016 TaxID=2494336 RepID=A0A4D8XTF3_9ALVE)

HSP 1 Score: 74.3 bits (181), Expect = 8.780e-14
Identity = 37/71 (52.11%), Postives = 45/71 (63.38%), Query Frame = 1
Query:   19 IRCAECKDVVDLCVSCFFSGSEPRQHKKTHSYRVMDKLHKPIYSEGWTAVEELALADLTRKRGLGAWEAIA 231
            IRCAEC++  DLC+ CF  G+E   HK+THSYRVM+KL   + S  WTA EEL L       GLG W  +A
Sbjct:   58 IRCAECQEF-DLCLDCFSVGAEISSHKRTHSYRVMEKLDFSVLSSDWTAHEELMLLQALDLYGLGNWVEVA 127          
BLAST of mRNA_Ecto-sp13_S_contig18042.5538.1 vs. uniprot
Match: A0A3P3Y5Z7_PLABS (Uncharacterized protein n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3Y5Z7_PLABS)

HSP 1 Score: 71.6 bits (174), Expect = 9.120e-13
Identity = 35/82 (42.68%), Postives = 51/82 (62.20%), Query Frame = 1
Query:    4 SQLCYIRCAECKDVVDLCVSCFFSGSE-----PRQHKKTHSYRVMDKLHKPIYSEGWTAVEELALADLTRKRGLGAWEAIAD 234
            SQ   ++C EC D + LCV CF SG+E        H+KTHSYRV+D++   I+ E WTA +EL L +   + G+G W+ +A+
Sbjct:  896 SQSIRVKCCECTDFI-LCVYCFASGAELLVDDQNMHRKTHSYRVIDRVTASIFDEDWTADDELMLLEGIERYGMGNWQDVAN 976          
BLAST of mRNA_Ecto-sp13_S_contig18042.5538.1 vs. uniprot
Match: F4P659_BATDJ (Uncharacterized protein (Fragment) n=1 Tax=Batrachochytrium dendrobatidis (strain JAM81 / FGSC 10211) TaxID=684364 RepID=F4P659_BATDJ)

HSP 1 Score: 71.2 bits (173), Expect = 1.140e-12
Identity = 34/72 (47.22%), Postives = 43/72 (59.72%), Query Frame = 1
Query:   19 IRCAECKDVVDLCVSCFFSGSEPRQHKKTHSYRVMDKLHKPIYSEGWTAVEELALADLTRKRGLGAWEAIAD 234
            I+CA C D  DLCV CF  G+E + HK  H YRV++ L  PI+   W A EEL L +     G+G WE I+D
Sbjct:   18 IKCAICPDF-DLCVECFSCGTELKDHKSDHDYRVLEMLDFPIFESSWGADEELLLVEGLELHGVGNWEQISD 88          
BLAST of mRNA_Ecto-sp13_S_contig18042.5538.1 vs. uniprot
Match: A0A1S8W801_9FUNG (Transcriptional adapter 2 n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8W801_9FUNG)

HSP 1 Score: 69.7 bits (169), Expect = 4.180e-12
Identity = 33/72 (45.83%), Postives = 43/72 (59.72%), Query Frame = 1
Query:   19 IRCAECKDVVDLCVSCFFSGSEPRQHKKTHSYRVMDKLHKPIYSEGWTAVEELALADLTRKRGLGAWEAIAD 234
            I+CA C D  DLCV CF  G+E + HK  H YRV++ L  PI+   W A EEL L +     G+G WE ++D
Sbjct:   45 IKCAICPDF-DLCVECFSCGTELKDHKADHDYRVLEMLDFPIFEADWGADEELLLVEGLELHGVGNWEQVSD 115          
BLAST of mRNA_Ecto-sp13_S_contig18042.5538.1 vs. uniprot
Match: A0A1Y1W9F9_9FUNG (Transcriptional adapter 2 n=1 Tax=Linderina pennispora TaxID=61395 RepID=A0A1Y1W9F9_9FUNG)

HSP 1 Score: 67.4 bits (163), Expect = 2.720e-11
Identity = 36/82 (43.90%), Postives = 50/82 (60.98%), Query Frame = 1
Query:   19 IRCAECK--DVVDLCVSCFFSGSEPRQHKKTHSYRVM------DKLHKPIYSEGWTAVEELALADLTRKRGLGAWEAIADLV 240
            IRC EC+  +  DLC +CF  G E  +HKKTHSYR++      ++   PI++E W+A EEL L D  R+ G+G W   A+ V
Sbjct:   25 IRCHECEKFEEFDLCAACFAKGIEIGRHKKTHSYRIVRAWQLIEQHRFPIFTEDWSADEELLLIDGLRQFGMGNWRDAAEHV 106          
BLAST of mRNA_Ecto-sp13_S_contig18042.5538.1 vs. uniprot
Match: A0A2G5BFS6_COERN (Transcriptional adapter 2 n=1 Tax=Coemansia reversa (strain ATCC 12441 / NRRL 1564) TaxID=763665 RepID=A0A2G5BFS6_COERN)

HSP 1 Score: 67.0 bits (162), Expect = 3.710e-11
Identity = 34/74 (45.95%), Postives = 45/74 (60.81%), Query Frame = 1
Query:   19 IRCAECKDVVDLCVSCFFSGSEPRQHKKTHSYRVMDKLHKPIYSEGWTAVEELALADLTRKRGLGAWEAIADLV 240
            I C EC +  DLC +CF  G E   HK  HSYRV+ +   PI++E W+A EEL L D  R+ G+G W+  A+ V
Sbjct:   37 ISCNECPEF-DLCTTCFSRGIELGSHKNDHSYRVVTRHRFPIFTEDWSADEELLLIDGLRQFGMGNWKDAAEHV 109          
BLAST of mRNA_Ecto-sp13_S_contig18042.5538.1 vs. uniprot
Match: A0A4P9ZPH0_9FUNG (Transcriptional adapter 2 n=1 Tax=Dimargaris cristalligena TaxID=215637 RepID=A0A4P9ZPH0_9FUNG)

HSP 1 Score: 66.2 bits (160), Expect = 6.900e-11
Identity = 34/74 (45.95%), Postives = 45/74 (60.81%), Query Frame = 1
Query:   19 IRCAECKDVVDLCVSCFFSGSEPRQHKKTHSYRVMDKLHKPIYSEGWTAVEELALADLTRKRGLGAWEAIADLV 240
            IRCAEC D  D CV+CF  G E   HK  H Y+V+     PI++E W+A EEL L +  ++ G+G W  IA+ V
Sbjct:   27 IRCAECPDF-DTCVTCFSQGIELGPHKNNHKYQVVTPNFFPIFTEDWSADEELLLIEGIQQFGMGNWMDIAEHV 99          
BLAST of mRNA_Ecto-sp13_S_contig18042.5538.1 vs. uniprot
Match: C3YVY8_BRAFL (Uncharacterized protein n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3YVY8_BRAFL)

HSP 1 Score: 64.3 bits (155), Expect = 3.000e-10
Identity = 30/75 (40.00%), Postives = 44/75 (58.67%), Query Frame = 1
Query:   16 YIRCAECKDVVDLCVSCFFSGSEPRQHKKTHSYRVMDKLHKPIYSEGWTAVEELALADLTRKRGLGAWEAIADLV 240
            +I+CA+CK  V LC+ CF  G E   H+  H Y ++     P++  GWTAVEEL L +     G+G W+ I++ V
Sbjct:   24 FIKCAQCKPPVLLCLQCFARGFEKSGHESDHRYEIITN-EFPVFDLGWTAVEELKLLEALGDCGIGNWQEISNNV 97          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18042.5538.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D7FRV7_ECTSI4.610e-4497.37Transcriptional adapter n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JL08_9PHAE1.780e-2970.67Transcriptional adapter n=2 Tax=Ectocarpus TaxID=2... [more]
A0A4D8XTF3_9ALVE8.780e-1452.11Uncharacterized protein n=1 Tax=Perkinsus sp. BL_2... [more]
A0A3P3Y5Z7_PLABS9.120e-1342.68Uncharacterized protein n=2 Tax=Plasmodiophora bra... [more]
F4P659_BATDJ1.140e-1247.22Uncharacterized protein (Fragment) n=1 Tax=Batrach... [more]
A0A1S8W801_9FUNG4.180e-1245.83Transcriptional adapter 2 n=1 Tax=Batrachochytrium... [more]
A0A1Y1W9F9_9FUNG2.720e-1143.90Transcriptional adapter 2 n=1 Tax=Linderina pennis... [more]
A0A2G5BFS6_COERN3.710e-1145.95Transcriptional adapter 2 n=1 Tax=Coemansia revers... [more]
A0A4P9ZPH0_9FUNG6.900e-1145.95Transcriptional adapter 2 n=1 Tax=Dimargaris crist... [more]
C3YVY8_BRAFL3.000e-1040.00Uncharacterized protein n=1 Tax=Branchiostoma flor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18042contigEcto-sp13_S_contig18042:16..1116 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score159.8
Seed ortholog evalue5.1e-37
Seed eggNOG ortholog2880.D7FRV7
Preferred nameTADA2A
Model size240
KEGG rclassRC00505,RC00738,RC02795
KEGG koko:K00457,ko:K03012,ko:K10391,ko:K11314
KEGG ReactionR00435,R00441,R00442,R00443,R01372,R02521
KEGG Pathwayko00130,ko00230,ko00240,ko00350,ko00360,ko01100,ko03020,ko05016,ko05169,map00130,map00230,map00240,map00350,map00360,map01100,map03020,map05016,map05169
KEGG ModuleM00044,M00180
Hectar predicted targeting categoryother localisation
GOsGO:0000018,GO:0000123,GO:0000124,GO:0000125,GO:0000183,GO:0000228,GO:0000278,GO:0000724,GO:0000725,GO:0000785,GO:0000790,GO:0000981,GO:0001786,GO:0001932,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003700,GO:0003712,GO:0003713,GO:0005488,GO:0005515,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005671,GO:0005694,GO:0005819,GO:0005856,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006325,GO:0006338,GO:0006342,GO:0006348,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006950,GO:0006970,GO:0006974,GO:0006996,GO:0007049,GO:0007155,GO:0008150,GO:0008152,GO:0008289,GO:0009058,GO:0009059,GO:0009266,GO:0009299,GO:0009405,GO:0009409,GO:0009628,GO:0009631,GO:0009719,GO:0009725,GO:0009733,GO:0009735,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010520,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010629,GO:0010638,GO:0010810,GO:0010811,GO:0015630,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0016569,GO:0016570,GO:0016573,GO:0018130,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019538,GO:0022610,GO:0030155,GO:0030447,GO:0031056,GO:0031058,GO:0031063,GO:0031248,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031401,GO:0031505,GO:0031589,GO:0031647,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032502,GO:0032774,GO:0032991,GO:0033043,GO:0033044,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035065,GO:0035066,GO:0035327,GO:0035690,GO:0036211,GO:0040007,GO:0040020,GO:0040029,GO:0042127,GO:0042221,GO:0042325,GO:0042493,GO:0042710,GO:0042789,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043543,GO:0043565,GO:0043708,GO:0043709,GO:0043900,GO:0043902,GO:0043966,GO:0043967,GO:0044010,GO:0044111,GO:0044114,GO:0044115,GO:0044182,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044764,GO:0045229,GO:0045785,GO:0045814,GO:0045892,GO:0045934,GO:0045935,GO:0046483,GO:0046695,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051445,GO:0051704,GO:0051716,GO:0051726,GO:0051783,GO:0060255,GO:0060631,GO:0065007,GO:0065008,GO:0070013,GO:0070461,GO:0070887,GO:0071214,GO:0071470,GO:0071554,GO:0071555,GO:0071704,GO:0071840,GO:0071852,GO:0072341,GO:0072686,GO:0080090,GO:0090043,GO:0090304,GO:0090311,GO:0090605,GO:0090609,GO:0097159,GO:0097659,GO:0104004,GO:0140110,GO:1900187,GO:1900189,GO:1900190,GO:1900192,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1901983,GO:1901985,GO:1902275,GO:1902493,GO:1902494,GO:1902562,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1905269,GO:1905368,GO:1990234,GO:1990414,GO:2000112,GO:2000113,GO:2000241,GO:2000756,GO:2000758,GO:2001141,GO:2001252
Exons2
EggNOG free text desc.positive regulation of histone acetylation
EggNOG OGsCOG5114@1,KOG0457@2759
EC1.13.11.27
Cds size240
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03036,ko03400,ko04147,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462932.4223557-CDS-Ecto-sp13_S_contig18042:15..1041681462932.4223557-CDS-Ecto-sp13_S_contig18042:15..104Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18042 16..104 -
1681462932.4413533-CDS-Ecto-sp13_S_contig18042:965..11161681462932.4413533-CDS-Ecto-sp13_S_contig18042:965..1116Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18042 966..1116 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18042.5538.1prot_Ecto-sp13_S_contig18042.5538.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18042 16..1116 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18042.5538.1

>prot_Ecto-sp13_S_contig18042.5538.1 ID=prot_Ecto-sp13_S_contig18042.5538.1|Name=mRNA_Ecto-sp13_S_contig18042.5538.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=80bp
TSQLCYIRCAECKDVVDLCVSCFFSGSEPRQHKKTHSYRVMDKLHKPIYS
EGWTAVEELALADLTRKRGLGAWEAIADLV
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mRNA from alignment at Ecto-sp13_S_contig18042:16..1116-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18042.5538.1 ID=mRNA_Ecto-sp13_S_contig18042.5538.1|Name=mRNA_Ecto-sp13_S_contig18042.5538.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1101bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18042:16..1116- (Ectocarpus species13 EcNAP12_S_4_19m)
ACATCCCAGCTGTGCTACATTCGGTGCGCGGAGTGCAAGGACGTGGTGGA CCTGTGCGTGAGCTGCTTCTTCAGCGGGAGCGAGCCGCGTCAGCACAAGA AGACCCACAGCTACCGGGTCATGGACAAGCTGCACAAGCCCATCTACTCA GGTACATCGACTGCAGGCATGTCAGAGTAGGTTGCTCGGTGTAATGACAA CTTGAATAGTGGAACTGTCCATGCAGTGGCATCAAAATTTCTTGTCACAA CATCAACATGAACATGTATGATACATGTACGTACCCAATAGTCGAACGGT GGCACTGCCCTGAACAGTGGCATGTTATGCTCTTGCCGCTAGATGCTACT GTATCAATATGTCGGGCCACCTACTGCATGCCACAGGGCCGTTAAAGGAG AGAGCATCGGAAAGATTTCCCGGAAAGAAATGCAGCCCAAATCCACGTGA AATGGGTGGGAGAAATGAGAGCCCGAAGTATCGGAATGGTGGCCTGTCAG TAGTCCGACGGAAATCTGGCGCTTGGGGAAATGGAGCGATCCTGGGAAAG TTATGAAGGAAATGATAAGTGTTCCATGTAGGTCACCGGGCCGTCGCCCG GGTTAGCAGGAGACAGCCGATAGCAGGAGACAGCCGCAAGGATAGTTACA GCAGTAGTTGTTGGTTTGTAGTCCACGCGGAGGATATGAGAGGCGTGCTG GTGACAGCAGCGCCGAAGAGACTAGACTGCGGCACAAGACTGTTGCGGAG CTTCCCTTTTGTGTGAGTCAAATCTGTAGTCTTGCACCATGATGGCGAAA CATCGTTTGTGTCTTCCATCATTTGATGTCGACACAAATGGTTGCGGCAG CAGGAGAGCCATGTATCCACGACATATTTGTTGAACGGACGCCAAACCTC GCGTCTCCCCAACCTCCCCTCTCCTCGCGTCGTGATTTCGAAAAACGAAA CCACACAATACCACAACACACCACGCCACCACCCTACATCACGACACAAC ACGACACGCCAGAGGGCTGGACCGCAGTCGAGGAGCTTGCCCTAGCGGAC CTCACGCGGAAAAGAGGGTTGGGAGCGTGGGAAGCAATCGCTGATCTGGT G
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18042:16..1116-

>mRNA_Ecto-sp13_S_contig18042.5538.1 ID=mRNA_Ecto-sp13_S_contig18042.5538.1|Name=mRNA_Ecto-sp13_S_contig18042.5538.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=240bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18042:16..1116- (Ectocarpus species13 EcNAP12_S_4_19m)
ACATCCCAGCTGTGCTACATTCGGTGCGCGGAGTGCAAGGACGTGGTGGA
CCTGTGCGTGAGCTGCTTCTTCAGCGGGAGCGAGCCGCGTCAGCACAAGA
AGACCCACAGCTACCGGGTCATGGACAAGCTGCACAAGCCCATCTACTCA
GAGGGCTGGACCGCAGTCGAGGAGCTTGCCCTAGCGGACCTCACGCGGAA
AAGAGGGTTGGGAGCGTGGGAAGCAATCGCTGATCTGGTG
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