mRNA_Ecto-sp13_S_contig18012.5524.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18012.5524.1
Unique NamemRNA_Ecto-sp13_S_contig18012.5524.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig18012.5524.1 vs. uniprot
Match: D7FTQ1_ECTSI (Subtilisin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTQ1_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 1.110e-37
Identity = 67/69 (97.10%), Postives = 69/69 (100.00%), Query Frame = 1
Query:    1 QPEVMHIHPEPRAEANNKVLTAFIEGGEPTETPMRVAGLTGAGQVIGVTDTGLDDNSCFFKDEEGSVPR 207
            QPEVMHIHPEPRAEANNKVLTA+IEGGEPTETPMRVAGLTGAGQVIGVTDTGLDD+SCFFKDEEGSVPR
Sbjct:  450 QPEVMHIHPEPRAEANNKVLTAYIEGGEPTETPMRVAGLTGAGQVIGVTDTGLDDSSCFFKDEEGSVPR 518          
BLAST of mRNA_Ecto-sp13_S_contig18012.5524.1 vs. uniprot
Match: D8LU20_ECTSI (Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU20_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 3.470e-11
Identity = 31/65 (47.69%), Postives = 41/65 (63.08%), Query Frame = 1
Query:    1 QPEVMHIHPEPRAEANNKVLTAFIEGGEPTETPMRVAGLTGAGQVIGVTDTGLDDNSCFFKDEEG 195
            +PEV+ + P   A   N V  A ++    TETP+  AGL G G+VI V DTGLD+ SCFF D++G
Sbjct:  259 KPEVLRVSPLQSASLYNAVANALVQSATTTETPLLDAGLDGTGEVIQVVDTGLDETSCFFADDDG 323          
BLAST of mRNA_Ecto-sp13_S_contig18012.5524.1 vs. uniprot
Match: D8LSW0_ECTSI (Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW0_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 4.750e-11
Identity = 30/65 (46.15%), Postives = 42/65 (64.62%), Query Frame = 1
Query:    1 QPEVMHIHPEPRAEANNKVLTAFIEGGEPTETPMRVAGLTGAGQVIGVTDTGLDDNSCFFKDEEG 195
            +PEV+ + P   A  +N V  A ++    TETP+  AGL G G+VI V D+GLD+ SCFF D++G
Sbjct:  306 KPEVLRVSPLQSARLHNAVANALVQSATTTETPLLDAGLDGTGEVIQVVDSGLDETSCFFADDDG 370          
BLAST of mRNA_Ecto-sp13_S_contig18012.5524.1 vs. uniprot
Match: A0A836CH33_9STRA (Subtilisin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH33_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.490e-9
Identity = 34/86 (39.53%), Postives = 47/86 (54.65%), Query Frame = 1
Query:    1 QPEVMHIHPEPRAEANNKVLTAFIEGGEPTETPMRV----------------AGLTGAGQVIGVTDTGLDDNSCFFKDEE-GSVPR 207
            +PEV+H+ P  R   +N + TA ++ G                         AGLTG GQV+G++DTGLDD SCFF+D+E G+ PR
Sbjct:  435 RPEVLHVVPLHRPRLHNDLATAVLQSGSXXXXXXXXXXXXXXXXXXAKALWEAGLTGEGQVLGISDTGLDDASCFFRDDERGATPR 520          
BLAST of mRNA_Ecto-sp13_S_contig18012.5524.1 vs. uniprot
Match: A0A7S4PA92_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4PA92_GUITH)

HSP 1 Score: 59.7 bits (143), Expect = 9.670e-9
Identity = 26/68 (38.24%), Postives = 40/68 (58.82%), Query Frame = 1
Query:    1 QPEVMHIHPEPRAEANNKVLTAFIEGGEPTETPMRVAGLTGAGQVIGVTDTGLDDNSCFFKDEEGSVP 204
            QP    I P+ +A+  NK     I+ G+ ++ P+   G+TG GQ++G+ DTG+D N CFF D +   P
Sbjct:  255 QPGTHWIEPKQQAKLRNKWAKGIIQSGDASQMPIFSKGITGTGQILGIADTGIDMNLCFFYDADHPAP 322          
BLAST of mRNA_Ecto-sp13_S_contig18012.5524.1 vs. uniprot
Match: L1JFD5_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JFD5_GUITC)

HSP 1 Score: 59.7 bits (143), Expect = 9.720e-9
Identity = 26/68 (38.24%), Postives = 40/68 (58.82%), Query Frame = 1
Query:    1 QPEVMHIHPEPRAEANNKVLTAFIEGGEPTETPMRVAGLTGAGQVIGVTDTGLDDNSCFFKDEEGSVP 204
            QP    I P+ +A+  NK     I+ G+ ++ P+   G+TG GQ++G+ DTG+D N CFF D +   P
Sbjct:  262 QPGTHWIEPKQQAKLRNKWAKGIIQSGDASQMPIFSKGITGTGQILGIADTGIDMNLCFFYDADHPAP 329          
BLAST of mRNA_Ecto-sp13_S_contig18012.5524.1 vs. uniprot
Match: A0A7S4SZ44_9STRA (Subtilisin n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4SZ44_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 2.420e-8
Identity = 28/72 (38.89%), Postives = 41/72 (56.94%), Query Frame = 1
Query:    1 QPEVMHIHPEPRAEANNKVLTAFIEGG----EPTETPMRVAGLTGAGQVIGVTDTGLDDNSCFFKDEEGSVP 204
            QPE+ H+  +   +  N +     +GG    +  ETP+  AG+TGAGQV+ V+DTGLD  +C+F D     P
Sbjct:  316 QPEICHVEVQGVVDTGNDIAQWLAQGGVGSEDAMETPLYDAGITGAGQVVAVSDTGLDYENCYFMDANAPDP 387          
BLAST of mRNA_Ecto-sp13_S_contig18012.5524.1 vs. uniprot
Match: A0A2I6U1R2_SACJA (Subtilisin (Fragment) n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A2I6U1R2_SACJA)

HSP 1 Score: 58.5 bits (140), Expect = 2.450e-8
Identity = 31/68 (45.59%), Postives = 38/68 (55.88%), Query Frame = 1
Query:    7 EVMHIHPEPRAEANNKVLTAFIEGGEPTETPMRVAGLTGAGQVIGVTDTGLDDNSCFFKDEEGS-VPR 207
            EV+ + P       N V    I+    TE P+  AGL G GQVI V DTGLD+ SCFF D++G  VP 
Sbjct:  328 EVLRVSPRHADRLLNAVARTIIQSATITEAPLTDAGLDGTGQVIQVIDTGLDETSCFFIDDDGEEVPH 395          
BLAST of mRNA_Ecto-sp13_S_contig18012.5524.1 vs. uniprot
Match: A0A7S4VZ45_9STRA (Subtilisin n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VZ45_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 2.450e-8
Identity = 28/72 (38.89%), Postives = 41/72 (56.94%), Query Frame = 1
Query:    1 QPEVMHIHPEPRAEANNKVLTAFIEGG----EPTETPMRVAGLTGAGQVIGVTDTGLDDNSCFFKDEEGSVP 204
            QPE+ H+  +   +  N +     +GG    +  ETP+  AG+TGAGQV+ V+DTGLD  +C+F D     P
Sbjct:  316 QPEICHVEVQGVVDTGNDIAQWLAQGGVGSEDAMETPLYDAGITGAGQVVAVSDTGLDYENCYFMDANAPDP 387          
BLAST of mRNA_Ecto-sp13_S_contig18012.5524.1 vs. uniprot
Match: A0A836CIB0_9STRA (Subtilisin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIB0_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 8.550e-8
Identity = 34/73 (46.58%), Postives = 40/73 (54.79%), Query Frame = 1
Query:    7 EVMHIHPEPRAEANNKVLTAFIEGGEPTET-----PMRVAGLTGAGQVIGVTDTGLDDNSCFFKDE-EGSVPR 207
            EV HI P       N V  A ++ G          P+  AGL G GQVIGV+DTGLDD SCFF+D+  G  PR
Sbjct:  416 EVAHITPLHALAHRNDVAQAVVQSGARDGAAHGAKPLWSAGLRGHGQVIGVSDTGLDDASCFFRDDARGRTPR 488          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18012.5524.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTQ1_ECTSI1.110e-3797.10Subtilisin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7F... [more]
D8LU20_ECTSI3.470e-1147.69Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
D8LSW0_ECTSI4.750e-1146.15Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A836CH33_9STRA1.490e-939.53Subtilisin n=1 Tax=Tribonema minus TaxID=303371 Re... [more]
A0A7S4PA92_GUITH9.670e-938.24Hypothetical protein (Fragment) n=1 Tax=Guillardia... [more]
L1JFD5_GUITC9.720e-938.24Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A7S4SZ44_9STRA2.420e-838.89Subtilisin n=2 Tax=Ditylum brightwellii TaxID=4924... [more]
A0A2I6U1R2_SACJA2.450e-845.59Subtilisin (Fragment) n=1 Tax=Saccharina japonica ... [more]
A0A7S4VZ45_9STRA2.450e-838.89Subtilisin n=3 Tax=Ditylum brightwellii TaxID=4924... [more]
A0A836CIB0_9STRA8.550e-846.58Subtilisin n=1 Tax=Tribonema minus TaxID=303371 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18012contigEcto-sp13_S_contig18012:103..312 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score136.0
Seed ortholog evalue6.5e-30
Seed eggNOG ortholog2880.D7FTQ1
Model size210
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.tripeptidyl-peptidase activity
EggNOG OGsCOG1404@1,KOG1114@2759
Cds size198
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462931.3920796-UTR-Ecto-sp13_S_contig18012:102..1141681462931.3920796-UTR-Ecto-sp13_S_contig18012:102..114Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18012 103..114 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462931.4097216-CDS-Ecto-sp13_S_contig18012:114..3121681462931.4097216-CDS-Ecto-sp13_S_contig18012:114..312Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18012 115..312 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18012.5524.1prot_Ecto-sp13_S_contig18012.5524.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18012 115..312 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18012.5524.1

>prot_Ecto-sp13_S_contig18012.5524.1 ID=prot_Ecto-sp13_S_contig18012.5524.1|Name=mRNA_Ecto-sp13_S_contig18012.5524.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=66bp
MHIHPEPRAEANNKVLTAFIEGGEPTETPMRVAGLTGAGQVIGVTDTGLD
DNSCFFKDEEGSVPR*
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mRNA from alignment at Ecto-sp13_S_contig18012:103..312+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18012.5524.1 ID=mRNA_Ecto-sp13_S_contig18012.5524.1|Name=mRNA_Ecto-sp13_S_contig18012.5524.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=210bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18012:103..312+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCCCGAGGTGATGCACATACACCCGGAACCGAGAGCGGAAGCGAATAA CAAGGTCCTGACGGCCTTCATTGAGGGCGGCGAGCCCACAGAGACTCCCA TGCGCGTGGCCGGCCTCACAGGAGCGGGGCAAGTGATCGGCGTCACCGAC ACGGGCCTTGACGACAACTCTTGCTTCTTCAAGGACGAGGAAGGCTCGGT CCCTAGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18012:103..312+

>mRNA_Ecto-sp13_S_contig18012.5524.1 ID=mRNA_Ecto-sp13_S_contig18012.5524.1|Name=mRNA_Ecto-sp13_S_contig18012.5524.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=198bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18012:103..312+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCACATACACCCGGAACCGAGAGCGGAAGCGAATAACAAGGTCCTGAC
GGCCTTCATTGAGGGCGGCGAGCCCACAGAGACTCCCATGCGCGTGGCCG
GCCTCACAGGAGCGGGGCAAGTGATCGGCGTCACCGACACGGGCCTTGAC
GACAACTCTTGCTTCTTCAAGGACGAGGAAGGCTCGGTCCCTAGGTGA
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