mRNA_Ecto-sp13_S_contig1801.5523.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1801.5523.1
Unique NamemRNA_Ecto-sp13_S_contig1801.5523.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1801.5523.1 vs. uniprot
Match: A0A6H5KGF5_9PHAE (Fe2OG dioxygenase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KGF5_9PHAE)

HSP 1 Score: 672 bits (1735), Expect = 9.780e-241
Identity = 334/357 (93.56%), Postives = 339/357 (94.96%), Query Frame = 3
Query:   96 MRCSVFLACVALTPGIAFNPNNQARLRMQQGFGK-SQSKTPAKLXXXXXXXPPAVPKQTPVRAGELPEDTFSQFPPLTPEQKQTLQKAPGGKATDFPIEVADRIRERHGFEHFDEKLFPGIRLLFADPVVFEVEGFFTPQECDAYIAMSTLKKSGRRKGGLAPTELQSATTSSQFQQXXTSTTWFHHYASAPELVAKASLLLGVDDYCKWEEPQTVRYRPGERFNWHLDALPPSECGASKGGQRTATVLVYLTNMHADGGGATAFRDLGPLRVRPKKGKCLVFFPSFGGEAGSPFDSRVLHAGEVVGQGNKAKEKYIAQLWCHKKPYPPSVPEGSSHEAAEKPIVDYVRRFAEAGVR 1163
            MRCSV LACVALTPG+AFNPNNQARLRMQQGFGK S+S TPAKL        PAVPKQTPVRAGELPED FSQFPPLTPEQKQTLQKAP GKAT FP+EVADRIRERHGFEHFDEKLFPGIRLL ADPVVFEVEGFFTPQECDAYIAMSTLKKSGRRKGGLAPTELQSATTSSQ QQXXTSTTWFHHYASAPELVAKASLLLGVDDY KWEEPQTVRYRPGERFNWHLDALPPSECGASKGGQRTATVLVYLTNMHA+GGGATAFRDLGPLRVRPKKGKCLVFFPSFGGEAGSPFDSRVLHAGEVVGQGNKAKEKYIAQLWCHKKPYPPSVPEGSSHEAAEKPIVDY RRFAEAGV+
Sbjct:    1 MRCSVLLACVALTPGVAFNPNNQARLRMQQGFGKQSRSNTPAKLKTPAKAPYPAVPKQTPVRAGELPEDAFSQFPPLTPEQKQTLQKAPAGKATAFPVEVADRIRERHGFEHFDEKLFPGIRLLHADPVVFEVEGFFTPQECDAYIAMSTLKKSGRRKGGLAPTELQSATTSSQCQQXXTSTTWFHHYASAPELVAKASLLLGVDDYSKWEEPQTVRYRPGERFNWHLDALPPSECGASKGGQRTATVLVYLTNMHANGGGATAFRDLGPLRVRPKKGKCLVFFPSFGGEAGSPFDSRVLHAGEVVGQGNKAKEKYIAQLWCHKKPYPPSVPEGSSHEAAEKPIVDYARRFAEAGVK 357          
BLAST of mRNA_Ecto-sp13_S_contig1801.5523.1 vs. uniprot
Match: A0A6H5L0Y5_9PHAE (Fe2OG dioxygenase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Y5_9PHAE)

HSP 1 Score: 244 bits (624), Expect = 2.270e-70
Identity = 151/381 (39.63%), Postives = 193/381 (50.66%), Query Frame = 3
Query:  252 AVPKQTPVRAGELPEDTFSQFPPLTPEQKQTLQ-------------KAPGGKATDFPIEVADRIRERHGFEHF-------------------------------------------------------DEKLFPGIRLLFADPVVFEVEGFFTPQECDAYIAMST----------------LKKSGRRKGGLAPTELQSATTSSQFQQXX--TSTTWFHHYASAPELVAKASLLLGVD-DYCKWEEPQTVRYRPGERFNWHLDALPPSECGASKGGQRTATVLVYLTNMHADGGGATAFRDLGPLRVRPKKGKCLVFFPSFGGEAGSPFDSRVLHAGEVVGQGNKAKEKYIAQLWCHKKPYPPSVPEGSSHEAAEKPIVDY 1133
            A P  T  R G+LP+D F+ FPPL+P+  +++               +  G+    P +V + IR RHG E F                                                          LFPG+RLL A+P V  V  FFT +ECD YI+ S                             P   +SAT  +        TSTTWFH +++ PEL+AKAS L+GV  +  +WEE QTVRYRPGE+F WHLDALPP+   ASKGGQR AT+LVYLT M    GGATAFRDLGPLRVRP+KG  L+FFPS GG    PFD R LHAGEVV  G + ++K+IAQLW  ++ Y P+VP+ + HE A   + ++
Sbjct:  191 AAPAATAARGGQLPDDDFATFPPLSPDTLKSIMGVDVFDLPAGGIPASERGQQEALPPQVLECIRGRHGLEEFAGGRRLLDPEYFGADGEAGDAALTGSXXXXXXXXXXXXXXXXXXXXXGGDGTAAKSRLLFPGLRLLHAEPPVIGVSDFFTDEECDEYISRSVSPPXXXXXXXXXXXXXXXXXXXXXXXXGPHMQRSATLGADVDAVAQRTSTTWFHRFSAVPELMAKASALVGVPFEEGRWEEAQTVRYRPGEKFTWHLDALPPAPDLASKGGQRIATLLVYLTEMPEGDGGATAFRDLGPLRVRPRKGSALLFFPSLGGAPDCPFDIRTLHAGEVVRPGAE-QDKWIAQLWLRERRYTPTVPKQNRHEHAASAVAEF 570          
BLAST of mRNA_Ecto-sp13_S_contig1801.5523.1 vs. uniprot
Match: D7G1H9_ECTSI (Fe2OG dioxygenase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1H9_ECTSI)

HSP 1 Score: 232 bits (592), Expect = 3.280e-68
Identity = 127/246 (51.63%), Postives = 157/246 (63.82%), Query Frame = 3
Query:  441 LFPGIRLLFADPVVFEVEGFFTPQECDAYIAMST------------LKKSGRRKGGLAPTELQSATTSSQFQQXX--TSTTWFHHYASAPELVAKASLLLGVD-DYCKWEEPQTVRYRPGERFNWHLDALPPSECGASKGGQRTATVLVYLTNMHADGGGATAFRDLGPLRVRPKKGKCLVFFPSFGGEAGSPFDSRVLHAGEVVGQGNKAKEKYIAQLWCHKKPYPPSVPEGSSHEAAEKPIVDY 1133
            LFPG+RLL A+P V  V  FFT +ECD YI+ S                      G  P   +SAT  +        TSTTWFH +++ PEL+AKAS L+GV  +  +WEE QTVRYRPGE+F WHLDALPP+   AS+GGQR AT+LVYLT M    GGATAFRDLGPLRVRP+KG  L+FFPS GG    PFD R LHAGEVV  G + ++K+IAQLW  +  Y P+VP+ + HE A   + ++
Sbjct:  100 LFPGLRLLHAEPPVIGVSDFFTDEECDEYISRSVSPPXXXXXXXXXXXXXXXXXXGSGPHMQRSATLGADVDAVAQRTSTTWFHRFSAVPELMAKASALVGVPFEEGRWEEAQTVRYRPGEKFTWHLDALPPAPDLASRGGQRIATLLVYLTEMPEGDGGATAFRDLGPLRVRPRKGSALLFFPSLGGAPDCPFDIRTLHAGEVVRPGAE-QDKWIAQLWLRESRYTPTVPKQNRHEHAAAVVAEF 344          
BLAST of mRNA_Ecto-sp13_S_contig1801.5523.1 vs. uniprot
Match: A0A7S2KCF3_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KCF3_9STRA)

HSP 1 Score: 233 bits (593), Expect = 2.690e-67
Identity = 128/264 (48.48%), Postives = 165/264 (62.50%), Query Frame = 3
Query:  360 GGKATDFPIEVADRIRERHGFEHFDEKLFPGIRLLFADPVVFEVEGFFTPQECDAYIAMSTLKKSGRRKGGLAPTELQSATTSSQFQQXXTSTTWFHHYASAPELVAKASLLLGVDDYCKWEEPQTVRYRPGERFNWHLDALPPSECGASKGGQRTATVLVYLTNMHADGGGATAFRDLGP-----LRVRPKKGKCLVFFPSFGGEAGSPFDSRVLHAGEVVGQGNKAKEKYIAQLWCHKKPYPPSVPEGSSHEAAEKPIVDYV 1136
            G  AT  P+   D + +   F+ F        R+L  DP+V  V+ FFT +ECD YIAMS    +G + G    T   +    +  +   TSTTWFHHY + PEL+AK+S L G+DD   +EEPQTVRY+P ++F WHLDAL P     SKGGQRTAT+LVYLT++  + GGAT FRDLGP     L+V+PKKG  L+FFP+ GG   +PFD R LHAGEVV    K+ +K+IAQLW  +  Y P+VP  + H AA +PI  YV
Sbjct:  183 GFSATATPMATVD-VSKLPPFDKF--------RVLHIDPLVIAVDDFFTHEECDKYIAMSD-PTAGNKDGDAVMTRSMTVGKDAAAKSQRTSTTWFHHYKNVPELMAKSSRLFGLDDIGVFEEPQTVRYQPDQKFTWHLDALAPGSENISKGGQRTATLLVYLTDLGPEDGGATTFRDLGPAEGEPLKVQPKKGSALLFFPAAGGIPNTPFDIRTLHAGEVVSADCKS-DKWIAQLWLREDSYEPTVPPENVHAAATEPISQYV 435          
BLAST of mRNA_Ecto-sp13_S_contig1801.5523.1 vs. uniprot
Match: A0A7S2UAB3_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UAB3_9STRA)

HSP 1 Score: 227 bits (578), Expect = 1.200e-64
Identity = 125/245 (51.02%), Postives = 155/245 (63.27%), Query Frame = 3
Query:  438 KLFPGIRLLFADPVVFEVEGFFTPQECDAYIAMST---LKKSGRRKGG--LAPTELQSATT---SSQFQQXXTSTTWFHHYASAPELVAKASLLLGVDDYCKWEEPQTVRYRPGERFNWHLDALPPSECGASKGGQRTATVLVYLTNMHADGGGATAFRDLG-----PLRVRPKKGKCLVFFPSFGGEAGSPFDSRVLHAGEVVGQGNKAKEKYIAQLWCHKKPYPPSVPEGSSHEAAEKPIVDY 1133
            K F   R+L  DP+V  V+ FFTP+ECDA IA ST   +      K G  L P ++  + T    S+ +   TSTTWFHHYA  PEL+AKA  L+G++D   +EEPQTVRYR  E F WHLDAL P+   A KGGQR AT+LVYLT++    GGAT FRDLG     PL+VRPKKG  L+FFP+ GG    P D R LH GE V   +  ++K+IAQLW  + PY P+ P G+SH +A  PI DY
Sbjct:  233 KPFSKFRVLHVDPMVLCVDDFFTPEECDALIARSTTTVITADNNEKEGTTLLPMKIGQSKTVGKDSRARAQRTSTTWFHHYAGVPELMAKACRLMGINDISAFEEPQTVRYRRTEHFTWHLDALAPTPELADKGGQRCATLLVYLTDLSEKDGGATMFRDLGGSDGEPLKVRPKKGSALLFFPAAGGIPSVPLDLRTLHCGEAVAS-DAEQDKWIAQLWLRETPYTPTAPPGNSHASASSPISDY 476          
BLAST of mRNA_Ecto-sp13_S_contig1801.5523.1 vs. uniprot
Match: K0SVE6_THAOC (Fe2OG dioxygenase domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SVE6_THAOC)

HSP 1 Score: 220 bits (560), Expect = 4.410e-62
Identity = 126/280 (45.00%), Postives = 165/280 (58.93%), Query Frame = 3
Query:  327 PEQKQTLQKAPGGKATDFPIEVADRIRERHGFEHFDEKLFPGIRLLFADPVVFEVEGFFTPQECDAYIAMSTLKKSGRRK--GGLAPTELQSATT---SSQFQQXXTSTTWFHHYASAPELVAKASLLLGVDDYCKWEEPQTVRYRPGERFNWHLDALPPSECG-ASKGGQRTATVLVYLTNMHADGGGATAFRDLG---PLRVRPKKGKCLVFFPSFGGEAGSPFDSRVLHAGEVVGQGNKAKEKYIAQLWCHKKPYPPSVPEGSSHEAAEKPIVDYVR 1139
            P      Q   GG A+     +   + E   FE F        R+L  DP+V  V+ FFT +ECD Y+ MS   ++ + +  G L P  L  + T    S+ +   TSTTWFHHYA  PEL+A+A+ LLG+    ++EEPQTVRYR  E+F WHLDAL P     +S  GQR +T+LVYLT++ ++ GGAT FRDLG   PL+VRPKKG  L+FFPS GG    PFD R LH GE VG+ +   EK+IAQLW  ++ Y P+ P GS H  A   I +Y +
Sbjct:  200 PAVSDDSQSRVGGAASSHDCSID--LNELPPFEQF--------RVLHVDPMVIAVDDFFTSEECDKYVQMSIDAENNQDQEAGALQPLLLGQSQTVGKDSRSKAQRTSTTWFHHYAGVPELMARAARLLGLPGISRFEEPQTVRYRRSEKFTWHLDALSPDVANDSSSAGQRVSTLLVYLTDLKSEEGGATMFRDLGGDGPLKVRPKKGSALLFFPSAGGIPDCPFDIRTLHCGEAVGE-DAPNEKWIAQLWLRQRDYTPTAPAGSEHRKATVAIQEYCK 468          
BLAST of mRNA_Ecto-sp13_S_contig1801.5523.1 vs. uniprot
Match: A0A7S1ZRX7_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZRX7_9STRA)

HSP 1 Score: 211 bits (536), Expect = 4.660e-61
Identity = 115/238 (48.32%), Postives = 147/238 (61.76%), Query Frame = 3
Query:  444 FPGIRLLFADPVVFEVEGFFTPQECDAYIAMSTLKKSGRRKGGLAPTEL-QSATTSSQF--QQXXTSTTWFHHYASAPELVAKASLLLGVDDYCKWEEPQTVRYRPGERFNWHLDALPPSECGASKGGQRTATVLVYLTNMHADGGGATAFRDLG-----PLRVRPKKGKCLVFFPSFGGEAGSPFDSRVLHAGEVVGQGNKAKEKYIAQLWCHKKPYPPSVPEGSSHEAAEKPIVDY 1133
            F   R+L  DP+V  V+ F T  ECD  +A++   K  +     AP ++ QS T       +   TSTTWFHHY   P+L+AKAS LLG+D+  +WEEPQTVRYR  E+F WHLDAL PS+  A  GGQR AT++VYL ++    GG+T FRDLG     PL+V PKKG  LVFFP+ GG    PFD R LHAGE V   ++  +K+IAQLW  +  Y P+ P G++H AA   I  Y
Sbjct:   26 FEKFRVLHVDPMVLCVDDFLTSDECDTLVALTDNPKYDKN-ANTAPMKIGQSKTVGKDMYSKSQRTSTTWFHHYRGLPQLMAKASRLLGLDNIDRWEEPQTVRYRRSEKFTWHLDALGPSDELAKSGGQRVATLIVYLADLPEGSGGSTMFRDLGGESGEPLKVHPKKGSALVFFPAAGGIPNVPFDIRTLHAGEAVSDESE-DDKWIAQLWLRETKYTPTAPPGNTHAAATDAISKY 261          
BLAST of mRNA_Ecto-sp13_S_contig1801.5523.1 vs. uniprot
Match: A0A7S4QXQ4_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QXQ4_9STRA)

HSP 1 Score: 211 bits (536), Expect = 7.900e-60
Identity = 115/238 (48.32%), Postives = 147/238 (61.76%), Query Frame = 3
Query:  444 FPGIRLLFADPVVFEVEGFFTPQECDAYIAMSTLKKSGRRKGGLAPTEL-QSATTSSQF--QQXXTSTTWFHHYASAPELVAKASLLLGVDDYCKWEEPQTVRYRPGERFNWHLDALPPSECGASKGGQRTATVLVYLTNMHADGGGATAFRDLG-----PLRVRPKKGKCLVFFPSFGGEAGSPFDSRVLHAGEVVGQGNKAKEKYIAQLWCHKKPYPPSVPEGSSHEAAEKPIVDY 1133
            F   R+L  DP+V  V+ F T  ECD  +A++   K  +     AP ++ QS T       +   TSTTWFHHY   P+L+AKAS LLG+D+  +WEEPQTVRYR  E+F WHLDAL PS+  A  GGQR AT++VYL ++    GG+T FRDLG     PL+V PKKG  LVFFP+ GG    PFD R LHAGE V   ++  +K+IAQLW  +  Y P+ P G++H AA   I  Y
Sbjct:  123 FEKFRVLHVDPMVLCVDDFLTSDECDTLVALTDNPKYDKN-ANTAPMKIGQSKTVGKDMYSKSQRTSTTWFHHYRGLPQLMAKASRLLGLDNIDRWEEPQTVRYRRSEKFTWHLDALGPSDELAKSGGQRVATLIVYLADLPEGSGGSTMFRDLGGESGEPLKVHPKKGSALVFFPAAGGIPNVPFDIRTLHAGEAVSDESE-DDKWIAQLWLRETKYTPTAPPGNTHAAATDAISKY 358          
BLAST of mRNA_Ecto-sp13_S_contig1801.5523.1 vs. uniprot
Match: A0A7S2N1B0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2N1B0_9STRA)

HSP 1 Score: 208 bits (530), Expect = 8.090e-60
Identity = 114/235 (48.51%), Postives = 146/235 (62.13%), Query Frame = 3
Query:  444 FPGIRLLFADPVVFEVEGFFTPQECDAYIAMSTLKKSGRRKGGLAPTEL-QSATTSSQF--QQXXTSTTWFHHYASAPELVAKASLLLGVDDYCKWEEPQTVRYRPGERFNWHLDALPPSECGASKGGQRTATVLVYLTNMHADGGGATAFRDLG-----PLRVRPKKGKCLVFFPSFGGEAGSPFDSRVLHAGEVVGQGNKAKEKYIAQLWCHKKPYPPSVPEGSSHEAAEKPI 1124
            F   R+L  DP++  ++ F TP ECD YI++++  K  +     AP E+ QS T       +   TSTTWFHHY     L+AKAS LLG+    +WEEPQTVRYR  E+F WHLDAL PSE     GGQR AT+LVYL ++    GG+T FRDLG     PL+V+PKKG  L+FFP+ GG    PFD R LHAGE V   +   +K+IAQLW  +  Y P+ P G+SHEAA + +
Sbjct:   57 FTKFRILHTDPMLLSIDDFLTPTECDTYISLTSNPKYDKN-ANTAPMEIGQSKTVGKDMYSKSQRTSTTWFHHYRGMAGLMAKASRLLGLKGIERWEEPQTVRYRRSEKFTWHLDALAPSEELTKAGGQRVATLLVYLADLPDGCGGSTMFRDLGGESGEPLKVQPKKGSALLFFPAAGGIPNVPFDIRTLHAGEAVSDESD-DDKWIAQLWLREHVYTPTAPPGNSHEAAVEAV 289          
BLAST of mRNA_Ecto-sp13_S_contig1801.5523.1 vs. uniprot
Match: B5Y5K1_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B5Y5K1_PHATC)

HSP 1 Score: 209 bits (531), Expect = 2.650e-58
Identity = 108/234 (46.15%), Postives = 146/234 (62.39%), Query Frame = 3
Query:  444 FPGIRLLFADPVVFEVEGFFTPQECDAYIAMSTLKKSGRRKGGLAPTELQSATTSSQFQQXXTSTTWFHHYASAPELVAKASLLLGVDDYCKWEEPQTVRYRPGERFNWHLDALPPSECGASKGGQRTATVLVYLTNMHADGGGATAFRDL----GPLRVRPKKGKCLVFFPSFGGEAGSPFDSRVLHAGEVVGQGNKAKEKYIAQLWCHKKPYPPSVPEGSSHEAAEKPIVDY 1133
            F   R+L  DP+V  ++ FFT  ECD Y+A++T  +        +PT  + A   +Q     TSTT+++H+   PEL+AKAS LLG+    +WEEPQTVRYR  E+F WHLDAL P+E     GGQR AT+LVY T++ +D GGAT FRDL    G L VRP++G  L+FFP+ GG   +PFD R LH G+ V      ++K+I+QLW  +  Y P+ P G+SH  A K I +Y
Sbjct:  196 FEKFRILHVDPLVLGIDDFFTAAECDRYVALATQNQKHNILESRSPTVGKDAAAKAQ----RTSTTYYNHFEGVPELMAKASRLLGLQSIDRWEEPQTVRYRKNEKFTWHLDALGPNENNPGLGGQRLATLLVYHTDLQSDEGGATMFRDLTGTNGRLAVRPRRGAALLFFPAAGGIPNAPFDVRTLHCGQAV-SATSQQDKWISQLWLRQSSYTPTAPPGNSHSQATKAISEY 424          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1801.5523.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KGF5_9PHAE9.780e-24193.56Fe2OG dioxygenase domain-containing protein n=2 Ta... [more]
A0A6H5L0Y5_9PHAE2.270e-7039.63Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
D7G1H9_ECTSI3.280e-6851.63Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A7S2KCF3_9STRA2.690e-6748.48Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S2UAB3_9STRA1.200e-6451.02Hypothetical protein n=1 Tax=Attheya septentrional... [more]
K0SVE6_THAOC4.410e-6245.00Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A7S1ZRX7_9STRA4.660e-6148.32Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4QXQ4_9STRA7.900e-6048.32Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S2N1B0_9STRA8.090e-6048.51Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
B5Y5K1_PHATC2.650e-5846.15Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1801contigEcto-sp13_S_contig1801:11216..15304 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score625.2
Seed ortholog evalue1.9e-176
Seed eggNOG ortholog2880.D8LRR7
Model size1576
Hectar predicted targeting categorysignal peptide
Exons3
EggNOG free text desc.procollagen-proline 4-dioxygenase activity
EggNOG OGsKOG1591@1,KOG1591@2759
Cds size1077
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462931.3074114-UTR-Ecto-sp13_S_contig1801:11215..113101681462931.3074114-UTR-Ecto-sp13_S_contig1801:11215..11310Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1801 11216..11310 +
1681462931.3475661-UTR-Ecto-sp13_S_contig1801:14900..153041681462931.3475661-UTR-Ecto-sp13_S_contig1801:14900..15304Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1801 14901..15304 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462931.318413-CDS-Ecto-sp13_S_contig1801:11310..116041681462931.318413-CDS-Ecto-sp13_S_contig1801:11310..11604Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1801 11311..11604 +
1681462931.3278272-CDS-Ecto-sp13_S_contig1801:13220..136701681462931.3278272-CDS-Ecto-sp13_S_contig1801:13220..13670Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1801 13221..13670 +
1681462931.3394706-CDS-Ecto-sp13_S_contig1801:14567..149001681462931.3394706-CDS-Ecto-sp13_S_contig1801:14567..14900Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1801 14568..14900 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1801.5523.1prot_Ecto-sp13_S_contig1801.5523.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1801 11311..14900 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1801.5523.1

>prot_Ecto-sp13_S_contig1801.5523.1 ID=prot_Ecto-sp13_S_contig1801.5523.1|Name=mRNA_Ecto-sp13_S_contig1801.5523.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=359bp
MRCSVFLACVALTPGIAFNPNNQARLRMQQGFGKSQSKTPAKLKTPAKAP
PPAVPKQTPVRAGELPEDTFSQFPPLTPEQKQTLQKAPGGKATDFPIEVA
DRIRERHGFEHFDEKLFPGIRLLFADPVVFEVEGFFTPQECDAYIAMSTL
KKSGRRKGGLAPTELQSATTSSQFQQQRTSTTWFHHYASAPELVAKASLL
LGVDDYCKWEEPQTVRYRPGERFNWHLDALPPSECGASKGGQRTATVLVY
LTNMHADGGGATAFRDLGPLRVRPKKGKCLVFFPSFGGEAGSPFDSRVLH
AGEVVGQGNKAKEKYIAQLWCHKKPYPPSVPEGSSHEAAEKPIVDYVRRF
AEAGVRPE*
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mRNA from alignment at Ecto-sp13_S_contig1801:11216..15304+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1801.5523.1 ID=mRNA_Ecto-sp13_S_contig1801.5523.1|Name=mRNA_Ecto-sp13_S_contig1801.5523.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4089bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1801:11216..15304+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAAGGCCTATGTGTTGCCTGGTGCTACGGCTGTCATCGTTGTTTACTGCC TGTGGGTGGAGATAGGCATACAACAGGAGATAGATAGTATCAGAGATGCG GTGCTCCGTGTTTTTAGCGTGTGTCGCGCTGACACCAGGCATAGCGTTCA ACCCAAATAATCAAGCGCGGTTGCGCATGCAGCAGGGCTTTGGAAAATCA CAGAGCAAGACTCCAGCAAAGCTCAAGACGCCAGCAAAGGCACCACCCCC GGCCGTTCCGAAACAGACCCCTGTGAGAGCAGGAGAATTGCCGGAGGATA CCTTCTCGCAGTTTCCGCCTTTGACCCCGGAGCAGAAGCAAACCCTCCAG AAAGCTCCAGGGGGCAAGGCGACGGACTTCCCTATCGAGGTGAGGATGGA ACCGCTGCGCTGCTGGCGGTACAAACATAGTTATGAAGCTTCGACCACGC CGCGTTTTACGAGCCCGCCAGTTTCCGTGATGCTTTGGGTGTTTTCATGG ATAGAGTGGCAGGCATGCGATACGAACTTGAAGTACAGGGGACGAAGAAA CGTCCCGTGCATTCAAAATTCAATAGATCCAAGTACGGCGGACCAGCGTT GATTCGGCCCAAATCTCTCGCTGGGTCCGCCTACAGTTGTAGAGCTCAGG TCGGTTCAGCCCAAATCATGGGCTCATGTGTGGCCAACAATGGACGACAC GCCCTTTTCTCCAGACGTCTGCTGAAGTCATGCGTATGGCCTCACGTCAT TGGCCGCTATTTGCTGCGATGACCAGTCTGTGCCTCTTGACTGCGTTTTC GACTTGTAACAATCAACAGCAGTGTTTGTAGGACAGGCCTAGGGTCTTCA GTAGGCCGTTCAAGAAAAAGAGGGCGATCTGGAGCACCTTTCTGTTCATG TTCCCATCTTGTGTGAGCTACAGACGCGATATCGTTTTGCAACACCTCCT GAAGGCAATGTATGACCTCGTGGCGTTGATCCCTTTGGATGCCGACAATT TAAAGTACTTTCTAAAACGGTGCCCCTCTTCCGAACTTGATCGCTCGTGG CATTGGATGGTACCCCCACCCACCCACCGCCATGATTCCGTACAAATTGT TTCGTGCTTCCGCTTTCCTCAAAAGTTGCGCCACTAGCCGGTCACCGACA TCATTTATTTAGCGTCTTGTTGGATTTCAGGAATTACGAGTTGCTAGGGC CCAGAGTATGGCCTCTCCCCCCTAACTTTGTCGACGGTCCCGAACTGTTG TAGTACCAAACGGCTTTCCAGGTGAATAGGCTGTGGTTTACGCTTGAGAA AACACCACTTGTTGACTGTGTGTTGTCCAGTTCTTGAAAAAATGACGACC AAAGAGGATCCTCGAAGGAACTGTTGACAGTTTGGCCTCTACAGTAGTGA CGCAGCAACTGGTCAGCGCACCACCCGCACTGACCTACAGCAGTCTGAAT CCCACCACAATGATGCTACAAGTTGTGAATGAGGTCCGGCGTCCGGGGGA TGACTCGAAAACCCTCAATCATACAGACGGGGCGGCTGTTGTGCGCGCGT TTGCGTGCCAAACTGCTCTGGCGGCAACTTCAGAGGCAGCATAGGAGGGT GTCGCAGGGAGCCGACTGAAAAAATGGGATAGAGCCCGTCATGTTGCGGC TAAAAGCGGGCACCAACTAGGACTGTTCATCTGAGCATGCGGCGGAGTAC CCTGCCATACTGTGCTCCGACCTCAATTGGCCGCGAAACGGTTTGAAAAT GATCGTTGTTCGATGCAGCGGTTTGACGTCTGTGTCCCAGCAAACGTCCA CATCCTGACGAGCGCATAGTTTTTTCAGCATGAAGTGGGAGTTGTGACCT ACACCCCGCCGAGCCAGCACAGTATTTCAGTTGTTGCAAGCATTCCCTTC GGTAAGGAAGAGGACTTTTCGAACAGAATCATCACAGGTGAAGCATGCTT CCATTTGTGCCGCTGACGGCCGCACACCGCTGTGTCTTGTGCGCGCGCTC TCCAGGTGGCGGATCGGATTAGAGAACGGCACGGCTTTGAGCACTTCGAC GAAAAGCTGTTCCCGGGCATCCGTCTTCTATTCGCCGACCCCGTTGTGTT TGAAGTGGAGGGATTTTTCACGCCTCAAGAGTGCGATGCGTACATCGCGA TGTCTACTTTGAAAAAATCGGGGCGGCGAAAAGGAGGCCTCGCGCCTACG GAGCTGCAGAGCGCAACTACTAGCTCTCAATTCCAGCAGCAGCGGACGTC AACCACTTGGTTTCACCATTACGCGTCGGCCCCAGAGCTGGTGGCGAAGG CATCGTTGCTTTTGGGTGTAGACGACTACTGCAAGTGGGAAGAGCCTCAG ACTGTTCGATACCGACCAGGCGAGAGATTCAATTGGCACTTGGATGCGCT CCCTCCCAGCGAATGCGGAGCGAGTAAGGGGGGTCAACGAACAGCTACGG TCCTTGTGAGTAAAACTATCCCCGTCCTCAGTATGTGGAGATCCAAGTTC AAGCTGCTGGCGTGGTTTTGTTGGTTAAGTCTCTGAACTAGACACCTCCA TTATTCAAAGGTCGCGGGTCTTCTTGTTTTTGTCCATCTAGCCAACAGTA GTTTTGAGATATGGCGACTGGCAAGGGCATGACCCGTCCGAACTGGGTGC TTGGATTGGGATCGAAATCTGCCAGTTTATCCACTTGACAAACATCATCT TGACAATATTAACATGGCCGGTCTGACCTCTATATCCGACGAATTCTCTT TCGTGTTTGTCAAGGCAAGGAGCCTAGTTTTCGTATTCACAAGCTTACCC ATGGTCAGGAATGCGCTGACATTTAACACCCGGGGAAAGTTCACGGCTCG CGAAAACTACTGTAGGACAAACCAAATAAAGTCGAGGCAGGACCGGAACG AGCTCTAAAAGGACAATCGCACTCTGTAAACGTATTCGCTGGTATAGAGT CTCCATCCTTGTGTGACTCGCCTCCAGATTGAGCTCATGAGAGCACACTA GCAGGGAGCGATGCAAGACTGAAAGGCCCTTCATCCCCTGGCCGCCCAAG TATGCTCTGTTACAGGTAGACTAGTGACAGGTATATTTGGGTCAGGTCGT GGTTCGAGGGCCTCCCTCAACAGCAACACTTACTCTCGACTTGTTCAGAT ATTTCAACACGACCCGGCACTTCCACTCAACTTGCATTATAGTCTAGAGA AGAAGAAGAAGGGATCATGTCCGGGAAGGAAGCTCCATCGTAATTTGCCG ACAACTCGCTTGTGGTTGACAGCATCGAACGTTTAGCATGGTGGACCAAG TTTCAAACTACCCTCTAACCTTCGCCATGCTGTGAAACGTTTGTTGACCC AGGTGTACTTGACAAATATGCACGCAGACGGCGGAGGGGCGACGGCATTT CGTGATCTGGGGCCTCTTCGTGTTCGACCCAAGAAGGGGAAATGCTTGGT GTTCTTTCCCTCGTTTGGGGGGGAGGCTGGCAGCCCCTTCGACAGCAGGG TTCTACACGCGGGGGAGGTTGTAGGCCAAGGCAACAAGGCCAAAGAGAAG TACATTGCGCAGCTCTGGTGTCACAAGAAACCGTACCCGCCGTCGGTGCC CGAGGGATCTTCCCACGAGGCAGCCGAGAAGCCGATTGTGGACTACGTGA GGCGTTTCGCGGAGGCAGGAGTGAGGCCGGAGTGATGCTGCTGCGCACTG GGCCCCCTGTGTAGCGTTTTATGTTCTAGCGACAGGGGTGCAGCACGTTG TGTCGTTCGTGTTCGTCACAGCCGAGAACAGCCGTACGCTCGCCTGTGCT TGTACTGCCGTACTGCCCACACCGTGTGTTCCCACTCCAAGGGGGCCACG CAGTTTGCGGATGATATCGTGGACGTTCGTGTACATGAGTTTTTCGAGGT AGAGTCAGTTAATGCCATCTTTGATGAAATACACTCTCTGGGGAATGCCC TGTGTTGTGTGTGCCTTTGTTGCGTGTATCTGGTACTTTTTTTTGTTCCC CACGCCATCAGTGTTTGGAGTGGGCAATTGTCTGAGAAAACAACAGTAAT CTTGGCACCAAGAAAAGCTGTGACACACGAGCAAGGCGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1801:11216..15304+

>mRNA_Ecto-sp13_S_contig1801.5523.1 ID=mRNA_Ecto-sp13_S_contig1801.5523.1|Name=mRNA_Ecto-sp13_S_contig1801.5523.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1077bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1801:11216..15304+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGGTGCTCCGTGTTTTTAGCGTGTGTCGCGCTGACACCAGGCATAGC
GTTCAACCCAAATAATCAAGCGCGGTTGCGCATGCAGCAGGGCTTTGGAA
AATCACAGAGCAAGACTCCAGCAAAGCTCAAGACGCCAGCAAAGGCACCA
CCCCCGGCCGTTCCGAAACAGACCCCTGTGAGAGCAGGAGAATTGCCGGA
GGATACCTTCTCGCAGTTTCCGCCTTTGACCCCGGAGCAGAAGCAAACCC
TCCAGAAAGCTCCAGGGGGCAAGGCGACGGACTTCCCTATCGAGGTGGCG
GATCGGATTAGAGAACGGCACGGCTTTGAGCACTTCGACGAAAAGCTGTT
CCCGGGCATCCGTCTTCTATTCGCCGACCCCGTTGTGTTTGAAGTGGAGG
GATTTTTCACGCCTCAAGAGTGCGATGCGTACATCGCGATGTCTACTTTG
AAAAAATCGGGGCGGCGAAAAGGAGGCCTCGCGCCTACGGAGCTGCAGAG
CGCAACTACTAGCTCTCAATTCCAGCAGCAGCGGACGTCAACCACTTGGT
TTCACCATTACGCGTCGGCCCCAGAGCTGGTGGCGAAGGCATCGTTGCTT
TTGGGTGTAGACGACTACTGCAAGTGGGAAGAGCCTCAGACTGTTCGATA
CCGACCAGGCGAGAGATTCAATTGGCACTTGGATGCGCTCCCTCCCAGCG
AATGCGGAGCGAGTAAGGGGGGTCAACGAACAGCTACGGTCCTTGTGTAC
TTGACAAATATGCACGCAGACGGCGGAGGGGCGACGGCATTTCGTGATCT
GGGGCCTCTTCGTGTTCGACCCAAGAAGGGGAAATGCTTGGTGTTCTTTC
CCTCGTTTGGGGGGGAGGCTGGCAGCCCCTTCGACAGCAGGGTTCTACAC
GCGGGGGAGGTTGTAGGCCAAGGCAACAAGGCCAAAGAGAAGTACATTGC
GCAGCTCTGGTGTCACAAGAAACCGTACCCGCCGTCGGTGCCCGAGGGAT
CTTCCCACGAGGCAGCCGAGAAGCCGATTGTGGACTACGTGAGGCGTTTC
GCGGAGGCAGGAGTGAGGCCGGAGTGA
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