mRNA_Ecto-sp13_S_contig17988.5503.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17988.5503.1
Unique NamemRNA_Ecto-sp13_S_contig17988.5503.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig17988.5503.1 vs. uniprot
Match: A0A6H5K485_9PHAE (TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K485_9PHAE)

HSP 1 Score: 222 bits (566), Expect = 2.370e-62
Identity = 103/112 (91.96%), Postives = 105/112 (93.75%), Query Frame = 1
Query:    1 LTNFHWPDSELSYTSTNGDTVVERISEYGDECYGHGGSDVFPFGLLDNVDDALQIKTGMQGNGETGNTLTNREALAIMDGRFNMLPYVYDNFKWEHCLDSGIDFDDAWDAST 336
            LTNFHWPDSELSYT TNGDTVVE  S YGD+CYGHGGSDVFPFGLLDN DDAL+IKTGMQGNGETGNTLTNREALA MDGRFN LPYVYDNFKWEHCLDSGIDFDDAWDAST
Sbjct:  694 LTNFHWPDSELSYTDTNGDTVVETTSNYGDKCYGHGGSDVFPFGLLDNDDDALKIKTGMQGNGETGNTLTNREALANMDGRFNNLPYVYDNFKWEHCLDSGIDFDDAWDAST 805          
BLAST of mRNA_Ecto-sp13_S_contig17988.5503.1 vs. uniprot
Match: D7FW00_ECTSI (Ortho-aminophenol oxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW00_ECTSI)

HSP 1 Score: 192 bits (488), Expect = 7.080e-52
Identity = 87/120 (72.50%), Postives = 98/120 (81.67%), Query Frame = 1
Query:    1 LTNFHWPDSELSYTSTNGDTVVERISEYGDECYGHGGSDVFPFGLLDNVDDALQIKTGMQGNGETGNTLTNREALAIMDGRFNMLPYVYDNFKWEHCLDSGIDFDDAWDASTAWRPDRKG 360
            LT+FHWPDSE SYT ++G+ VVE    YGD C+GHGGSDVFPF LLD  DDA QIKTGM GNGETGN LTNRE LA++D RFNMLPYVYDNF+W+HCL  GIDF+DAWDAST+   D KG
Sbjct:  575 LTDFHWPDSEFSYTDSDGNIVVETTGIYGDTCHGHGGSDVFPFDLLDGDDDAFQIKTGMPGNGETGNKLTNREVLAVLDARFNMLPYVYDNFRWDHCLKDGIDFEDAWDASTSSSADNKG 694          
BLAST of mRNA_Ecto-sp13_S_contig17988.5503.1 vs. uniprot
Match: D7G9A4_ECTSI (Ortho-aminophenol oxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9A4_ECTSI)

HSP 1 Score: 186 bits (471), Expect = 1.560e-49
Identity = 82/110 (74.55%), Postives = 95/110 (86.36%), Query Frame = 1
Query:    1 LTNFHWPDSELSYTSTNGDTVVERISEYGDECYGHGGSDVFPFGLLDNVDDALQIKTGMQGNGETGNTLTNREALAIMDGRFNMLPYVYDNFKWEHCLDSGIDFDDAWDA 330
            LT+FHWPDSE SY+ ++G+TVVE  S YGD C+GHGGSDVFPFGLLD+ DDA +IKTGMQGN ETGN LTNRE LA++D R+NMLPYVYDNF+W+HCL  GIDF DAWDA
Sbjct:  573 LTDFHWPDSEFSYSDSDGNTVVETTSTYGDTCHGHGGSDVFPFGLLDDDDDAFKIKTGMQGNEETGNKLTNREVLAVLDARYNMLPYVYDNFRWDHCLQDGIDFYDAWDA 682          
BLAST of mRNA_Ecto-sp13_S_contig17988.5503.1 vs. uniprot
Match: D8LB18_ECTSI (ShTK domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB18_ECTSI)

HSP 1 Score: 179 bits (455), Expect = 2.790e-48
Identity = 81/120 (67.50%), Postives = 98/120 (81.67%), Query Frame = 1
Query:    1 LTNFHWPDSELSYTSTNGDTVVERISEYGDECYGHGGSDVFPFGLLDNVDDALQIKTGMQGNGETGNTLTNREALAIMDGRFNMLPYVYDNFKWEHCLDSGIDFDDAWDASTAWRPDRKG 360
            LT+F+WPDSE SY+ ++G+TVVE  S+YGD C+GH GSDVFPFGLL++ D   +IKTGM GN ETGN LTNRE LA++D R+NMLPYVYD+F+W+HCL  GIDF DAWDASTA    RKG
Sbjct:  402 LTDFYWPDSEFSYSDSDGNTVVETTSKYGDTCHGHSGSDVFPFGLLEDDDAGFKIKTGMLGNEETGNKLTNREVLAVLDARYNMLPYVYDDFRWDHCLQDGIDFYDAWDASTASNDGRKG 521          
BLAST of mRNA_Ecto-sp13_S_contig17988.5503.1 vs. uniprot
Match: D8LC47_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC47_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 3.800e-36
Identity = 66/116 (56.90%), Postives = 81/116 (69.83%), Query Frame = 1
Query:    1 LTNFHWPDSELSYTSTNGDTVVERISEYGDECYGHGGSDVFPFGLLDNVDDALQIKTGMQGNGETGNTLTNREALAIMDGRFNMLPYVYDNFKWEHCLDSGIDFDDAWDASTAWRP 348
            +T+F WPD +++ T  +G   VE IS YG+ C GH GSDVFPFGLLD+  D   IKTG++GN +TGN LTNREAL   D R N LPYVYD FKW HC   G++FDDAW+ + A  P
Sbjct:  145 ITDFTWPDDDVTVTKPDGTVEVESISLYGETCSGHRGSDVFPFGLLDSDTDGFTIKTGIRGNLDTGNQLTNREALQAFDARSNSLPYVYDTFKWTHCEADGVNFDDAWENAKARGP 260          
BLAST of mRNA_Ecto-sp13_S_contig17988.5503.1 vs. uniprot
Match: D8LC42_ECTSI (TYRosinase family member (Tyr-4) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC42_ECTSI)

HSP 1 Score: 144 bits (364), Expect = 1.540e-34
Identity = 64/112 (57.14%), Postives = 79/112 (70.54%), Query Frame = 1
Query:    1 LTNFHWPDSELSYTSTNGDTVVERISEYGDECYGHGGSDVFPFGLLDNVDDALQIKTGMQGNGETGNTLTNREALAIMDGRFNMLPYVYDNFKWEHCLDSGIDFDDAWDAST 336
            +T++ WPD++++YT+ +G  V E +SEY + C+GH GSDVFPFGLLD   D  +IKTG+  N  TGN LTNREAL   D R N LPYVYD F WEHC   G DF DAW +ST
Sbjct:  633 ITDWSWPDADVTYTTPDGTVVTESLSEYEESCFGHHGSDVFPFGLLDTDTDGFEIKTGISFNSATGNELTNREALQAFDPRINALPYVYDTFNWEHCAADGYDFGDAWQSST 744          
BLAST of mRNA_Ecto-sp13_S_contig17988.5503.1 vs. uniprot
Match: A0A6H5J7R8_9PHAE (TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7R8_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 9.390e-34
Identity = 66/116 (56.90%), Postives = 80/116 (68.97%), Query Frame = 1
Query:    1 LTNFHWPDSELSYTSTNGDTVVERISEYGDECYGHGGSDVFPFGLLDNVDDALQIKTGMQGNGETGNTLTNREALAIMDGRFNMLPYVYDNFKWEHCLDSGIDFDDAWDASTAWRP 348
            +T+F WPD +++ T  +G   VE IS YGD C GH GSDVFPFGLLD+  D   IKTG++GN +TGN LTNRE L   D R N LPYVYD FKW HC   G++FDDAW+ + A  P
Sbjct:  613 ITDFTWPDGDVTVTKPDGTVEVESISLYGDTCTGHRGSDVFPFGLLDSDTDDFTIKTGIRGNPDTGNQLTNREVLQAFDARSNSLPYVYDTFKWTHCEADGVNFDDAWENAKARGP 728          
BLAST of mRNA_Ecto-sp13_S_contig17988.5503.1 vs. uniprot
Match: D8LC46_ECTSI (Tyrosinase_Cu-bd domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LC46_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 3.260e-31
Identity = 61/116 (52.59%), Postives = 79/116 (68.10%), Query Frame = 1
Query:    1 LTNFHWPDSELSYTSTNGDTVVERISEYGDECYGHGGSDVFPFGLLDNVDDALQIKTGMQGNGETGNTLTNREALAIMDGRFNMLPYVYDNFKWEHCLDSGIDFDDAWDASTAWRP 348
            +T+F WPD +++ T  +G   VE +S YG+ C GHGGSDVFPFG+LD+  D  ++KTG++G  E GNTLTNRE L   D R N + YVYD FKW HC   G DF+DAW+ +   RP
Sbjct:  648 ITDFTWPDDDVTITKPDGTVEVESLSLYGETCQGHGGSDVFPFGILDSDTDGFEVKTGVKGM-ENGNTLTNRELLQAFDARSNSVSYVYDTFKWTHCEADGFDFNDAWNGAAQARP 762          
BLAST of mRNA_Ecto-sp13_S_contig17988.5503.1 vs. uniprot
Match: A0A6H5JRR4_9PHAE (TYR protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JRR4_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 5.640e-31
Identity = 69/114 (60.53%), Postives = 81/114 (71.05%), Query Frame = 1
Query:   16 WPDSELSYTSTNGDTVVERISEYGDECYGHGGSDVFPFGLLDNVDDALQIKTGMQGNGETGNTLTNREALAIMDGRFNMLPYVYDNFKWEHCLDSGIDFDDAWD-ASTAWRPDR 354
            WPD++ S  S+N     E IS YGD+C GHGGSDVFPF LLD+  D  +IKTGM+GN E GN+ TNRE LA MD R N L YVYD FKW+HCL SG DFD A+D +STA   D+
Sbjct:  616 WPDADAS--SSN-----EMISRYGDDCVGHGGSDVFPFNLLDSDHDGFEIKTGMKGNPEIGNSFTNREVLAAMDPRVNQLSYVYDTFKWDHCLGSGYDFDTAFDYSSTASAEDK 722          
BLAST of mRNA_Ecto-sp13_S_contig17988.5503.1 vs. uniprot
Match: A0A6H5J676_9PHAE (TYR protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J676_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 1.130e-27
Identity = 63/138 (45.65%), Postives = 88/138 (63.77%), Query Frame = 1
Query:    1 LTNFHWPDSELSYTSTNGDTVVERISEYGDECYGHGGSDVFPFGLLDNVDDALQIKTGMQGNG-ETGNTLTNREALAIMDGRFNMLPYVYDNFKWEHCLDSGIDFDDAW------DASTAWRPD------RKGPKATS 375
            +T+F WPD++++YT+++G T  + IS+Y +EC GH GSDVFPF +L N  +   ++TG++G+    GNT+TNRE LA  D R N LPYVYD F+W HC + G D  DAW      +AS    P       +KGP+A S
Sbjct:  595 VTDFEWPDADVTYTASDGTTYSQPISKYSEECLGHRGSDVFPFDILANEVNDFTVQTGIKGSPLGGGNTMTNREVLAAFDPRINALPYVYDTFEWAHCAEDGFDLRDAWLAKGDEEASRGEGPGGQAMSAKKGPRAVS 732          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17988.5503.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5K485_9PHAE2.370e-6291.96TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7FW00_ECTSI7.080e-5272.50Ortho-aminophenol oxidase n=1 Tax=Ectocarpus silic... [more]
D7G9A4_ECTSI1.560e-4974.55Ortho-aminophenol oxidase n=1 Tax=Ectocarpus silic... [more]
D8LB18_ECTSI2.790e-4867.50ShTK domain containing protein n=1 Tax=Ectocarpus ... [more]
D8LC47_ECTSI3.800e-3656.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LC42_ECTSI1.540e-3457.14TYRosinase family member (Tyr-4) n=1 Tax=Ectocarpu... [more]
A0A6H5J7R8_9PHAE9.390e-3456.90TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LC46_ECTSI3.260e-3152.59Tyrosinase_Cu-bd domain-containing protein n=3 Tax... [more]
A0A6H5JRR4_9PHAE5.640e-3160.53TYR protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
A0A6H5J676_9PHAE1.130e-2745.65TYR protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17988contigEcto-sp13_S_contig17988:988..2860 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1069
Hectar predicted targeting categoryother localisation
Exons3
Cds size252
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462929.9854543-UTR-Ecto-sp13_S_contig17988:987..10161681462929.9854543-UTR-Ecto-sp13_S_contig17988:987..1016Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17988 988..1016 +
1681462929.995569-UTR-Ecto-sp13_S_contig17988:1229..13621681462929.995569-UTR-Ecto-sp13_S_contig17988:1229..1362Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17988 1230..1362 +
1681462930.0049386-UTR-Ecto-sp13_S_contig17988:1953..19651681462930.0049386-UTR-Ecto-sp13_S_contig17988:1953..1965Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17988 1954..1965 +
1681462930.0236063-UTR-Ecto-sp13_S_contig17988:2217..28601681462930.0236063-UTR-Ecto-sp13_S_contig17988:2217..2860Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17988 2218..2860 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462930.0155559-CDS-Ecto-sp13_S_contig17988:1965..22171681462930.0155559-CDS-Ecto-sp13_S_contig17988:1965..2217Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17988 1966..2217 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17988.5503.1prot_Ecto-sp13_S_contig17988.5503.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17988 1966..2217 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17988.5503.1

>prot_Ecto-sp13_S_contig17988.5503.1 ID=prot_Ecto-sp13_S_contig17988.5503.1|Name=mRNA_Ecto-sp13_S_contig17988.5503.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=84bp
MQGNGETGNTLTNREALAIMDGRFNMLPYVYDNFKWEHCLDSGIDFDDAW
DASTAWRPDRKGPKATSGVKSTKKKSASLRSVT*
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mRNA from alignment at Ecto-sp13_S_contig17988:988..2860+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17988.5503.1 ID=mRNA_Ecto-sp13_S_contig17988.5503.1|Name=mRNA_Ecto-sp13_S_contig17988.5503.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1873bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17988:988..2860+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCACCAACTTCCACTGGCCTGACTCTGAGTGAGAGAACACGCTGCTGAT TCGCTTACTTGTTGTCACTGATGCTACCCCAACGGCGGCAGAGCATTTTC GTTTGTGTTGTCCACCCTGACGTCCAACCTACCCCCATGGTGTCCCCGCC AGCCGTGAGTGTCTCGCTCTCGTTCTCTGGACTTTCGTCATCCTACAGGG CATTAAATTTGTCTTCTTCGTTTCATTGTAATCGGTGAGCAGGCTTTCCT ACACGAGCACTAACGGCGACACCGTCGTCGAGAGGATCAGCGAATACGGC GACGAGTGTTACGGCCACGGCGGAAGCGACGTGTTCCCCTTTGGCCTTCT CGACAACGTCGACGACGCTTTGCAGGCATGTTGATGATACGCAGAGCCGT CGACAGCCGTGGCTGTCTGCCCCCTGCCCCAGTCCCACGAACGCTTGCAG AATCTCTACAGGAATCGATGTATCCCTGAGCCTTGATCAAGTCTCACCGT ACCCCTGGGACTTAGTAGCCATGATCCCAATTTCTCGATCCCTTTTCGAG ACACACCGATGCTGTCTTTCGTTCTGACCTACCGTAGAAATGTGGTGTTT GTCGCGCCGTCAGTTATTAGTCGTCAACGCCTTTTCGCCTCTGGGACTAG CTCGTCGCAATCCTCCGTACCTGTCTCGCACCCCTGCTGACTCGAGCAAC GGGAGTTCGTTTCTGCCTTATAGATGTGCCTAAATCAGTGTAGGCCCTAA CCAATCATCCACGCGCTGAACCCCTTAACTTATCGATCCTGTTGGGAGTT CCAGCTTATCCAATATTTCATTTACACGAAGCCGAAGGCCCAACCTCTTG TGTCTCTGACTTGCTGTAAACTTGAACCTAACCTTGTGATCTGTGCATTT CGGCGCGTTTCTCTGTCACAATCTCTCTGCGCCTGTCTCGTTCTTGCTCT CGCGCTCTCTCTGCAGATCAAGACTGGCATGCAGGGAAACGGAGAGACTG GCAACACACTCACGAATAGGGAGGCCCTAGCAATCATGGACGGTCGATTC AACATGCTGCCGTACGTGTACGATAACTTCAAGTGGGAGCACTGCCTGGA TTCCGGCATCGACTTCGACGACGCCTGGGACGCTTCGACGGCGTGGAGAC CCGACAGGAAGGGCCCAAAGGCTACCAGCGGCGTAAAGTCGACCAAGAAG AAGTCGGCCTCTTTACGAAGTGTAACATAACACGACGCGTCATGAACGTA CCGCAGTCGAACGGTGGAGGCGGATTTGGGGAAATCTCGAGAGGTTGATC GAATCCTGTGGTGCGTTGGAGTGGGTTGGCTCGGCGACGGGGTATCCTAC ATTAGCCTAGACAATGAAGTTCCATTGCTGTGCGTTTGTGGTGTTCGGGC GAAATGGCGATTTGCGTGTCTCCTGTTGTGTTTTAGTATGAGGTCTCTTT ACCTTTGAGCTTTGACGAGTGCTTGACCCTCGCGAGCGAGGAATAACCAA GGTCATATTTTGCAAGGCCAACACCGTATAGTCCGCACTCTTGTACGAGT TTATGTTCTACAGTAGTGAGAGCAGCGTTGCGCTGACATGCTCCGCGCTC CAAGCGGGTGATAGAATAACAGGTAGGCGTTGTCGTGAGTTCTTCGCGAA AAAACAAAGTCCTCACAAAAACTGATACTTTCTCATTGTATGCATAGCAA CTAGGGTAGCGGGCTTCCCAATAGGGCGGGCGGCCAGCATGCGTGGGATG GGTGTGGCGGTTCAATAGGCAGAGGAAGTAGACGCGGTGATGGCATCGCG ACGCAAGAAGGGTGAACGAAATTGGCCTAGAGCGTGTGAGGTCCACGTGT CCGTTGCGTTGATCGGTTGTCCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17988:988..2860+

>mRNA_Ecto-sp13_S_contig17988.5503.1 ID=mRNA_Ecto-sp13_S_contig17988.5503.1|Name=mRNA_Ecto-sp13_S_contig17988.5503.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=252bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17988:988..2860+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGGGAAACGGAGAGACTGGCAACACACTCACGAATAGGGAGGCCCT
AGCAATCATGGACGGTCGATTCAACATGCTGCCGTACGTGTACGATAACT
TCAAGTGGGAGCACTGCCTGGATTCCGGCATCGACTTCGACGACGCCTGG
GACGCTTCGACGGCGTGGAGACCCGACAGGAAGGGCCCAAAGGCTACCAG
CGGCGTAAAGTCGACCAAGAAGAAGTCGGCCTCTTTACGAAGTGTAACAT
AA
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