mRNA_Ecto-sp13_S_contig17978.5495.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17978.5495.1
Unique NamemRNA_Ecto-sp13_S_contig17978.5495.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17978.5495.1 vs. uniprot
Match: D8LEC1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEC1_ECTSI)

HSP 1 Score: 288 bits (738), Expect = 1.620e-94
Identity = 146/151 (96.69%), Postives = 150/151 (99.34%), Query Frame = 1 
Query:  262 EDRTGRRGSSSGKRSSLSLKFDQFFVSMYNYGTLLHEALVRFAFDVMASGKEFCNRQDVIGLVSLLHSEKTRIRDTTNTLMGIMDPHNRDKVSFETFRKEERRLGSMLFPAFKLQKTLRAKVLGQRFWRKATKRRRKARMVGADLCREYTK 714
            EDRTGRRGSSS KRSSLSLKFDQFFVSMYNYGTLLHEALVRFAFDVMASGKEFCNRQDVIGLVSLLHSEK+R+R+TT+TLMGIMDPHNRDKVSFETFRKEERRLGSMLFPAFKLQKTLRAKVLGQRFWRKATKRRRKARMVGADLCREYTK
Sbjct:   99 EDRTGRRGSSSSKRSSLSLKFDQFFVSMYNYGTLLHEALVRFAFDVMASGKEFCNRQDVIGLVSLLHSEKSRVRNTTDTLMGIMDPHNRDKVSFETFRKEERRLGSMLFPAFKLQKTLRAKVLGQRFWRKATKRRRKARMVGADLCREYTK 249
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BLAST of mRNA_Ecto-sp13_S_contig17978.5495.1 vs. uniprot
Match: A0A835ZE72_9STRA (EF-hand domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE72_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 4.840e-17
Identity = 55/152 (36.18%), Postives = 82/152 (53.95%), Query Frame = 1 
Query:  316 LKFDQFFVSMYNYGTLLHEALVRFAFDVMASGKEFCNRQDVIGLVSLLHSEKTRIRDTTNTLMGIMDPHNRDKVSFETFRKEERRLGSMLFPAFKLQKTLRAK------------------------VLGQRFWRKATKRRRKARMVGADLC 699
            + F +F VSMY+Y T  H  LVRF+F ++++GK +    DV   V+LL +   R ++TT ++M ++D     +V++E F   E++LGSML+PAF+LQK LR K                        VL +RFW +A + R  A   GAD  
Sbjct:  121 MSFAEFLVSMYSYCTQSHGTLVRFSFRIISAGKRYITLGDVGAFVALLITNPARHQETTASMMQVLDSEKTGRVAWEQFLANEKKLGSMLYPAFRLQKMLRNKSSTLTASAPAADNRPRSSRAARLQVLSRRFWARAARGR--AANAGADAA 270
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BLAST of mRNA_Ecto-sp13_S_contig17978.5495.1 vs. uniprot
Match: A0A225WT84_9STRA (EF-hand domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WT84_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.050e-6
Identity = 46/132 (34.85%), Postives = 74/132 (56.06%), Query Frame = 1 
Query:  298 KRSSLSLKFDQFFVSMYNYGTLLHEALVRFAFDVM---ASGK------EFCNRQDVIGLVSLLHSEKTRIRDTTNTLMGIMDPHNRDKVSFETFRKEERRLGSMLFPAFKLQKTLRAKVLGQRFWRKATKRR 666
            +  S  + F +F ++++NY +  H +LVRFAFD+     SG+      E C R+ V G    ++S   +I D    L  IM     +++S   F++   R   +LFPAF+LQ  ++ KVLG+RFW +AT++R
Sbjct:    3 RNGSGEVDFIEFVLAVWNYCSFNHASLVRFAFDLYDIDGSGEIEHDEIERCVRE-VWGAGWEVNSNAHKIVDK---LDAIMANTTNNRLSATLFQEFAVRHPMLLFPAFELQMEIQRKVLGKRFWARATEKR 130
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BLAST of mRNA_Ecto-sp13_S_contig17978.5495.1 vs. uniprot
Match: G4ZDA4_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZDA4_PHYSP)

HSP 1 Score: 57.4 bits (137), Expect = 2.190e-6
Identity = 39/130 (30.00%), Postives = 69/130 (53.08%), Query Frame = 1 
Query:  298 KRSSLSLKFDQFFVSMYNYGTLLHEALVRFAFDVM-ASGKEFCNRQDVIGLVSLLHSEKTRIRDTTNTLMGIMD------PHNRDKVSFETFRKEERRLGSMLFPAFKLQKTLRAKVLGQRFWRKATKRR 666
            +  S  + F +F ++++NY +  H +LVRFA+D+    G       +V+  V  +         +   ++  +D      P+NR  +S   F++   R   +LFPAF+LQ  ++ KVLG+RFW +AT++R
Sbjct:   32 RNGSGEVDFIEFVLAVWNYCSFNHASLVRFAYDLYDIDGSGEIEHDEVVRCVREIWGSAWETSSSAQKIVEKLDAIMANTPNNR--LSAALFQEFAVRHPMLLFPAFELQMEIQRKVLGKRFWSRATEKR 159
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BLAST of mRNA_Ecto-sp13_S_contig17978.5495.1 vs. uniprot
Match: A0A6A3MZN3_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3MZN3_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 4.340e-5
Identity = 37/119 (31.09%), Postives = 64/119 (53.78%), Query Frame = 1 
Query:  331 FFVSMYNYGTLLHEALVRFAFDVM-ASGKEFCNRQDVIGLVSLLHSEKTRIRDTTNTLMGIMD------PHNRDKVSFETFRKEERRLGSMLFPAFKLQKTLRAKVLGQRFWRKATKRR 666
            F ++++NY +  H +LVRFA+D+    G       +V+  V  +         +   ++  +D      P+NR  +S   F++   R   +LFPAF+LQ  ++ KVLG+RFW +AT++R
Sbjct:   98 FVLAVWNYCSFNHASLVRFAYDLYDIDGSGEIEHDEVVRCVREVWGSAWETSSSAQKIVDKLDAIMANTPNNR--LSAALFQEFAVRHPMLLFPAFELQMEIQRKVLGKRFWSRATEKR 214
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BLAST of mRNA_Ecto-sp13_S_contig17978.5495.1 vs. uniprot
Match: A0A6A3ZBF7_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3ZBF7_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 5.430e-5
Identity = 37/119 (31.09%), Postives = 64/119 (53.78%), Query Frame = 1 
Query:  331 FFVSMYNYGTLLHEALVRFAFDVM-ASGKEFCNRQDVIGLVSLLHSEKTRIRDTTNTLMGIMD------PHNRDKVSFETFRKEERRLGSMLFPAFKLQKTLRAKVLGQRFWRKATKRR 666
            F ++++NY +  H +LVRFA+D+    G       +V+  V  +         +   ++  +D      P+NR  +S   F++   R   +LFPAF+LQ  ++ KVLG+RFW +AT++R
Sbjct:   98 FVLAVWNYCSFNHASLVRFAYDLYDIDGSGEIEHDEVVRCVREVWGSAWETSSSAQKIVDKLDAIMANTPNNR--LSAALFQEFAVRHPMLLFPAFELQMEIQRKVLGKRFWSRATEKR 214
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17978.5495.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LEC1_ECTSI1.620e-9496.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZE72_9STRA4.840e-1736.18EF-hand domain-containing protein n=1 Tax=Tribonem... [more]
A0A225WT84_9STRA1.050e-634.85EF-hand domain-containing protein n=1 Tax=Phytopht... [more]
G4ZDA4_PHYSP2.190e-630.00Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A6A3MZN3_9STRA4.340e-531.09Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A6A3ZBF7_9STRA5.430e-531.09Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17978contigEcto-sp13_S_contig17978:528..1872 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score70.9
Seed ortholog evalue4.9e-10
Seed eggNOG ortholog44056.XP_009039936.1
Model size717
KEGG koko:K12879,ko:K13754,ko:K17582
KEGG TC2.A.19.4.4
KEGG Pathwayko03013,ko03040,map03013,map03040
KEGG ModuleM00405,M00406
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.calcium:sodium antiporter activity involved in regulation of cardiac muscle cell membrane potential
EggNOG OGsCOG0530@1,KOG2399@2759,KOG4475@1,KOG4475@2759
Cds size375
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01009,ko02000,ko03019,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462929.394726-CDS-Ecto-sp13_S_contig17978:527..6201681462929.394726-CDS-Ecto-sp13_S_contig17978:527..620Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17978 528..620 -
1681462929.4127705-CDS-Ecto-sp13_S_contig17978:867..11361681462929.4127705-CDS-Ecto-sp13_S_contig17978:867..1136Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17978 868..1136 -
1681462929.4241693-CDS-Ecto-sp13_S_contig17978:1517..15301681462929.4241693-CDS-Ecto-sp13_S_contig17978:1517..1530Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17978 1518..1530 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462929.4350321-UTR-Ecto-sp13_S_contig17978:1530..18721681462929.4350321-UTR-Ecto-sp13_S_contig17978:1530..1872Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17978 1531..1872 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17978.5495.1prot_Ecto-sp13_S_contig17978.5495.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17978 528..1530 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17978.5495.1

>prot_Ecto-sp13_S_contig17978.5495.1 ID=prot_Ecto-sp13_S_contig17978.5495.1|Name=mRNA_Ecto-sp13_S_contig17978.5495.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=125bp
MYNYGTLLHEALVRFAFDVMASGKEFCNRQDVIGLVSLLHSEKTRIRDTT
NTLMGIMDPHNRDKVSFETFRKEERRLGSMLFPAFKLQKTLRAKVLGQRF
WRKATKRRRKARMVGADLCREYTK*
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mRNA from alignment at Ecto-sp13_S_contig17978:528..1872-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17978.5495.1 ID=mRNA_Ecto-sp13_S_contig17978.5495.1|Name=mRNA_Ecto-sp13_S_contig17978.5495.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1345bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17978:528..1872- (Ectocarpus species13 EcNAP12_S_4_19m)
TACCCTTCCCGGGACCTAAATGTCCTAGAGAAAGAAAGGACTGAAAAAAA
AGCTCATTGTGCTGCCTCGTTGCTCCTGCAAGAGTCAGTTAGATGCGTGT
GCACTGCATCCAACGGCAACGTGTTGAAGGATGCACGTTGCCCGCAAAGT
ACTCACATACGCCACCAACAGACTTGGATTCACCTCCATTCGTCGCCTGC
GGGCAGTTCTTCTGTTCTTAGTCGTCCCATTCCCACTGCTTCTTCGACTT
GTCGTTAGAAGGAAGACCGAACAGGACGTAGAGGGTCTTCAAGCGGTAAA
CGCTCCAGCCTCTCGCTCAAGTTCGATCAGTTTTTTGTCAGCATGTACAA
CTACGGTGAGTAAAGTCGCGCAGACGACTCAGGCCAGTGGGATGAGGTCA
GCACGCGTGTAGCACGAATACCATCCATGTATCAGAATCAGAGGGTATGT
CGTGTTGGGAGTCTGAGTCCCCCGTTCGGGGCATGCATGGTGAGGCGGGA
AGCACCTCGTAGCCTTTCGGGCCAATCAGAGGGGATACCTGTCACACCAC
CAAGGACGTACGTGCGTGTGAACAACACGCTTTGGGAATGAGAGATTGCC
GCTGGTGCTACCGCTGCTGACATTCCATTTGTGCACACACTTGTCCAAAC
CCCACCCAATCCCTTCTTCTTGTCCGCCCTCATCGTTCGGTGGAAATAAT
TCACCCGGTGCACCGACGCGGCCGGTTACGACTCAGGCACGCTTCTCCAC
GAAGCCCTGGTGCGCTTCGCTTTCGATGTGATGGCGTCGGGGAAGGAGTT
CTGCAACAGGCAGGACGTGATTGGTCTGGTGTCGCTGCTCCACTCGGAGA
AGACCCGCATCAGGGACACCACCAACACCCTCATGGGCATCATGGACCCT
CATAACCGGGACAAGGTATCCTTCGAGACGTTCAGGAAGGAGGAGCGGCG
GCTGGGTTCAATGCTCTTCCCCGCGTTCAAGCTGCAGAAGACCCTCCGAG
CAAAGGTGTACGCTTACCGTTTTTGGTTTCGTGCGGGGCCCACGTTGACA
TCATGCCCCACTACAATTATCACAGAAGACTGTGTTTAAGGAGGGACACC
CTGTTCCATGCATGGCACATGAGCCCATGGAGAAACACGGGTCTTGTCTT
CGGGACAGCAGATCAGCCGACACCCATAAAGAGTCATCAGGCAGCACAAT
GATGCGTGCGCTGTGTGTGAGCTCGACGCGTTCTTTCCTCACGGGGTAGC
AGGTTCTCGGGCAGCGGTTTTGGCGCAAAGCCACGAAGAGGCGTCGGAAG
GCTCGCATGGTTGGAGCCGATCTCTGTCGAGAGTACACCAAGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17978:528..1872-

>mRNA_Ecto-sp13_S_contig17978.5495.1 ID=mRNA_Ecto-sp13_S_contig17978.5495.1|Name=mRNA_Ecto-sp13_S_contig17978.5495.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=375bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17978:528..1872- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTACAACTACGGCACGCTTCTCCACGAAGCCCTGGTGCGCTTCGCTTT
CGATGTGATGGCGTCGGGGAAGGAGTTCTGCAACAGGCAGGACGTGATTG
GTCTGGTGTCGCTGCTCCACTCGGAGAAGACCCGCATCAGGGACACCACC
AACACCCTCATGGGCATCATGGACCCTCATAACCGGGACAAGGTATCCTT
CGAGACGTTCAGGAAGGAGGAGCGGCGGCTGGGTTCAATGCTCTTCCCCG
CGTTCAAGCTGCAGAAGACCCTCCGAGCAAAGGTTCTCGGGCAGCGGTTT
TGGCGCAAAGCCACGAAGAGGCGTCGGAAGGCTCGCATGGTTGGAGCCGA
TCTCTGTCGAGAGTACACCAAGTGA
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