mRNA_Ecto-sp13_S_contig17951.5482.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17951.5482.1
Unique NamemRNA_Ecto-sp13_S_contig17951.5482.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig17951.5482.1 vs. uniprot
Match: A0A6H5JGT6_9PHAE (Bifunctional lysine-specific demethylase and histidyl-hydroxylase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGT6_9PHAE)

HSP 1 Score: 211 bits (538), Expect = 5.750e-65
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1
Query:    1 AGRGTFSQGSTGWRMAPVSTPRGKSFEDAKLRFDDVKNALKEKSGTVVVNSAGAYIRPLAGICLDVMEALDIPVCLNLYITAAGQKTSAPPHTDKQDVFVMQTQ 312
            AGRGTFSQGSTGWRMAPVSTPRGKSFEDAKLRFDDVKNALKEKSGTVVVNSAGAYIRPLAGICLDVMEALDIPVCLNLYITAAGQKTSAPPHTDKQDVFVMQTQ
Sbjct:   46 AGRGTFSQGSTGWRMAPVSTPRGKSFEDAKLRFDDVKNALKEKSGTVVVNSAGAYIRPLAGICLDVMEALDIPVCLNLYITAAGQKTSAPPHTDKQDVFVMQTQ 149          
BLAST of mRNA_Ecto-sp13_S_contig17951.5482.1 vs. uniprot
Match: W7TSI8_9STRA (Bifunctional lysine-specific demethylase and histidyl-hydroxylase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TSI8_9STRA)

HSP 1 Score: 137 bits (345), Expect = 2.950e-36
Identity = 68/106 (64.15%), Postives = 81/106 (76.42%), Query Frame = 1
Query:    1 AGRGTFSQGST--GWRMAPVSTPRGKSFEDAKLRFDDVKNALKEKSGTVVVNSAGAYIRPLAGICLDVMEALDIPVCLNLYITAAGQKTSAPPHTDKQDVFVMQTQ 312
            AGRG F + S   GW+MA V   RG SFE+AKLR +DV+ ALK++SGTVV NS G  +  LAG+CLD +EA  +PV LNLY+TA GQ TSAPPHTDKQDVFV+QTQ
Sbjct:  146 AGRGFFEENSETGGWKMAAVGLARGSSFEEAKLRPEDVRAALKQRSGTVVFNSVGGSVAALAGVCLDAVEAFRLPVALNLYMTAPGQSTSAPPHTDKQDVFVLQTQ 251          
BLAST of mRNA_Ecto-sp13_S_contig17951.5482.1 vs. uniprot
Match: A0A7S2CTT2_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2CTT2_9EUKA)

HSP 1 Score: 127 bits (319), Expect = 6.210e-35
Identity = 64/103 (62.14%), Postives = 77/103 (74.76%), Query Frame = 1
Query:    1 AGRGTFSQGSTGWRMAPVSTPRGKSFEDAKLRFDDVKNALKEKSGTVVVNSAGAYIRPLAGICLDVMEALDIPVCLNLYITAAGQKTSAPPHTDKQDVFVMQT 309
            AGRG    G  GW+MAPVS PRG SFEDAK+R+ DV  A+K   GTVV NSAGA++  L   CL  M+A ++P CLNLY+TA G +TSAPPHTDKQDVFV+Q+
Sbjct:   74 AGRGIPDNG--GWKMAPVSKPRGSSFEDAKMRYVDVVEAMK--LGTVVFNSAGAHVPRLGSACLAAMDAFELPNCLNLYVTAKGTETSAPPHTDKQDVFVLQS 172          
BLAST of mRNA_Ecto-sp13_S_contig17951.5482.1 vs. uniprot
Match: A0A7S3TKE7_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3TKE7_9SPIT)

HSP 1 Score: 122 bits (307), Expect = 8.550e-34
Identity = 63/103 (61.17%), Postives = 76/103 (73.79%), Query Frame = 1
Query:    1 AGRGTFSQGSTGWRMAPVSTPRGKSFEDAKLRFDDVKNALKEKSGTVVVNSAGAYIRPLAGICLDVMEALDIPVCLNLYITAAGQKTSAPPHTDKQDVFVMQT 309
            AG G    GS GW+MA VS PRG S+EDAKLR+ DV + ++   GTVV NSAGA+I  LA +CL  +EA  +P CLNLY++  G KTSAPPHTDKQDVFV+QT
Sbjct:   10 AGIGISDAGS-GWKMAAVSEPRGTSYEDAKLRYIDVADGMQR--GTVVFNSAGAHIPKLAAVCLAALEAFGLPNCLNLYLSGRGLKTSAPPHTDKQDVFVLQT 109          
BLAST of mRNA_Ecto-sp13_S_contig17951.5482.1 vs. uniprot
Match: A0A7S2G032_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G032_9STRA)

HSP 1 Score: 118 bits (296), Expect = 4.890e-32
Identity = 60/103 (58.25%), Postives = 73/103 (70.87%), Query Frame = 1
Query:    1 AGRGTFSQGSTGWRMAPVSTPRGKSFEDAKLRFDDVKNALKEKSGTVVVNSAGAYIRPLAGICLDVMEALDIPVCLNLYITAAGQKTSAPPHTDKQDVFVMQT 309
            AGRG  S G  GW+M  VS PRG SFEDAK+R+ DV+ +L +  GTVV NSAG+    L+ ICL  ++  D+P CLNLY+T  G  TSAPPHTDKQDV V+QT
Sbjct:    7 AGRG-ISDGIGGWKMGAVSVPRGNSFEDAKMRYVDVEASLSK--GTVVFNSAGSNFDKLSAICLAALDVFDLPNCLNLYLTGVGTATSAPPHTDKQDVMVIQT 106          
BLAST of mRNA_Ecto-sp13_S_contig17951.5482.1 vs. uniprot
Match: A0A0M0K7A9_9EUKA (Bifunctional lysine-specific demethylase and histidyl-hydroxylase (Fragment) n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K7A9_9EUKA)

HSP 1 Score: 123 bits (308), Expect = 3.380e-31
Identity = 62/104 (59.62%), Postives = 77/104 (74.04%), Query Frame = 1
Query:    1 AGRGTFSQ-GSTGWRMAPVSTPRGKSFEDAKLRFDDVKNALKEKSGTVVVNSAGAYIRPLAGICLDVMEALDIPVCLNLYITAAGQKTSAPPHTDKQDVFVMQT 309
            AGRG     G  GW+MA VS PRG SFEDAK+R+ DV+ A+++  GTVV NSAGA+I  L  +CL  ++A  +P CLNLY+TA G  TSAPPHTDKQDVFV+Q+
Sbjct:   75 AGRGIAEDLGDGGWKMAAVSQPRGSSFEDAKMRYVDVQKAMED--GTVVFNSAGAHISRLGSMCLAALDAFGLPNCLNLYVTAKGCATSAPPHTDKQDVFVLQS 176          
BLAST of mRNA_Ecto-sp13_S_contig17951.5482.1 vs. uniprot
Match: A0A7S1UD86_9STRA (Bifunctional lysine-specific demethylase and histidyl-hydroxylase n=5 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UD86_9STRA)

HSP 1 Score: 124 bits (310), Expect = 6.710e-31
Identity = 63/104 (60.58%), Postives = 79/104 (75.96%), Query Frame = 1
Query:    1 AGRGTFSQGSTGWRMAPVSTPRGKSFEDAKLRFDDVKNALKEKSGTVVVNSAGAYIRPLAGICLDVMEALDIPVCLNLYITAAGQKTSAPPHTDKQDVFVMQTQ 312
            AGRGT +Q  +GW+MAPV   RG SF DAK+ +DDV  A++  +GTVV NSAGA+I  L+ + L  ++A   P CLNLY+TA G+KTSAPPHTDKQDVFV+QTQ
Sbjct:  109 AGRGT-TQMRSGWKMAPVGQVRGSSFLDAKMNYDDVVTAME--AGTVVFNSAGAHIPKLSAVSLAALDAFGYPTCLNLYLTAKGKKTSAPPHTDKQDVFVIQTQ 209          
BLAST of mRNA_Ecto-sp13_S_contig17951.5482.1 vs. uniprot
Match: A0A7S2XYX3_9STRA (Bifunctional lysine-specific demethylase and histidyl-hydroxylase n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYX3_9STRA)

HSP 1 Score: 120 bits (302), Expect = 7.030e-30
Identity = 61/105 (58.10%), Postives = 77/105 (73.33%), Query Frame = 1
Query:    1 AGRGTFSQ-GSTGWRMAPVSTPRGKSFEDAKLRFDDVKNALKEKSGTVVVNSAGAYIRPLAGICLDVMEALDIPVCLNLYITAAGQKTSAPPHTDKQDVFVMQTQ 312
            AGRG   + G  GW+MA V   +GK+    K++ +DV+ AL ++SGTVV NSAGA +  L+G+CLDV   L +P  LNLY+TAAGQ TSAPPHTDKQDVFV+QTQ
Sbjct:  142 AGRGLVDEDGRAGWQMARVG--KGKASSPKKMKVEDVRKALSQRSGTVVFNSAGANVPALSGVCLDVASVLQLPTNLNLYLTAAGQTTSAPPHTDKQDVFVVQTQ 244          
BLAST of mRNA_Ecto-sp13_S_contig17951.5482.1 vs. uniprot
Match: A0A7S3WNN0_EMIHU (Bifunctional lysine-specific demethylase and histidyl-hydroxylase (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3WNN0_EMIHU)

HSP 1 Score: 114 bits (286), Expect = 1.990e-29
Identity = 54/91 (59.34%), Postives = 66/91 (72.53%), Query Frame = 1
Query:   34 GWRMAPVSTPRGKSFEDAKLRFDDVKNALKEKSGTVVVNSAGAYIRPLAGICLDVMEALDIPVCLNLYITAAGQKTSAPPHTDKQDVFVMQ 306
            GW+MAPVS PRG S+EDAKLR+ DV   ++   GTVV NSAGA++  L  ICL  + A  +P CLN+Y+T    K SAPPHTDKQDVFV+Q
Sbjct:  140 GWKMAPVSQPRGSSYEDAKLRYVDVAAGIER--GTVVFNSAGAHVPKLGAICLAALRAFGLPNCLNMYLTGPSVKQSAPPHTDKQDVFVLQ 228          
BLAST of mRNA_Ecto-sp13_S_contig17951.5482.1 vs. uniprot
Match: R1BJP6_EMIHU (JmjC domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BJP6_EMIHU)

HSP 1 Score: 114 bits (286), Expect = 5.610e-29
Identity = 54/91 (59.34%), Postives = 66/91 (72.53%), Query Frame = 1
Query:   34 GWRMAPVSTPRGKSFEDAKLRFDDVKNALKEKSGTVVVNSAGAYIRPLAGICLDVMEALDIPVCLNLYITAAGQKTSAPPHTDKQDVFVMQ 306
            GW+MAPVS PRG S+EDAKLR+ DV   ++   GTVV NSAGA++  L  ICL  + A  +P CLN+Y+T    K SAPPHTDKQDVFV+Q
Sbjct:  120 GWKMAPVSQPRGSSYEDAKLRYVDVAAGIER--GTVVFNSAGAHVPKLGAICLAALRAFGLPNCLNMYLTGPSVKQSAPPHTDKQDVFVLQ 208          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17951.5482.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JGT6_9PHAE5.750e-65100.00Bifunctional lysine-specific demethylase and histi... [more]
W7TSI8_9STRA2.950e-3664.15Bifunctional lysine-specific demethylase and histi... [more]
A0A7S2CTT2_9EUKA6.210e-3562.14Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A7S3TKE7_9SPIT8.550e-3461.17Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A7S2G032_9STRA4.890e-3258.25Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A0M0K7A9_9EUKA3.380e-3159.62Bifunctional lysine-specific demethylase and histi... [more]
A0A7S1UD86_9STRA6.710e-3160.58Bifunctional lysine-specific demethylase and histi... [more]
A0A7S2XYX3_9STRA7.030e-3058.10Bifunctional lysine-specific demethylase and histi... [more]
A0A7S3WNN0_EMIHU1.990e-2959.34Bifunctional lysine-specific demethylase and histi... [more]
R1BJP6_EMIHU5.610e-2959.34JmjC domain-containing protein n=1 Tax=Emiliania h... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17951contigEcto-sp13_S_contig17951:2452..3458 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score105.9
Seed ortholog evalue1.1e-20
Seed eggNOG ortholog2850.Phatr46687
Model size312
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.Cupin superfamily protein
EggNOG OGs2CYFP@1,2S42U@2759,2XBKN@2836
Cds size312
COG Functional cat.S
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462928.6204486-CDS-Ecto-sp13_S_contig17951:2451..25891681462928.6204486-CDS-Ecto-sp13_S_contig17951:2451..2589Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17951 2452..2589 +
1681462928.6322334-CDS-Ecto-sp13_S_contig17951:3284..34581681462928.6322334-CDS-Ecto-sp13_S_contig17951:3284..3458Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17951 3285..3458 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17951.5482.1prot_Ecto-sp13_S_contig17951.5482.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17951 2452..3458 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17951.5482.1

>prot_Ecto-sp13_S_contig17951.5482.1 ID=prot_Ecto-sp13_S_contig17951.5482.1|Name=mRNA_Ecto-sp13_S_contig17951.5482.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=104bp
AGRGTFSQGSTGWRMAPVSTPRGKSFEDAKLRFDDVKNALKEKSGTVVVN
SAGAYIRPLAGICLDVMEALDIPVCLNLYITAAGQKTSAPPHTDKQDVFV
MQTQ
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mRNA from alignment at Ecto-sp13_S_contig17951:2452..3458+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17951.5482.1 ID=mRNA_Ecto-sp13_S_contig17951.5482.1|Name=mRNA_Ecto-sp13_S_contig17951.5482.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1007bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17951:2452..3458+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCGGGAGAGGGACGTTCAGTCAGGGGTCTACGGGGTGGAGGATGGCGCC GGTGTCGACGCCGAGGGGGAAGAGCTTCGAAGACGCCAAGCTGAGGTTCG ACGACGTCAAGAACGCTTTGAAAGAGAAGAGTGGGACTGTGAGTGTAGTT TGTCGATATCCTCGGCTCTTTTCGGGTGGCAGCGGCGGCAGCAACATCAG CACCAGCAGCAGTTGTTGGTATTGTTGTCGCTGCTACTAGCGTAGGTGGA TTGATATCCCCCCGCCCCTGGTCAATGGTCTACCAGCTAAGCGCATGCAA AACATTAGTACGAACCCCCCCTGGACCGACTTTCAAAGCTTGATCACTAC TCCACGATGAAGCGGATGCCAAAATCAAGTGGTCCGTTTTCGGAAAGCTC GCGACGGAGGCGGTTCTAACGCCGCCATTTTCGGCGCCGTCACTGGTTGT GCTGAAGAGTGATCGGGCTTTGAGAATCGGTCCATAGAGTATGGTGCCTT GCGGACCTACGGTTTTTTCGCTGGCTGCTCTTTTGGGCCTCCGTCCCATG GCGTTTTCATACGAGTTATACAAAAAATCTCGTTGAGATGCTGATCGAGG GCGCCAAAGCGGATTTCCATCGCATGAGACTGCATGTCCGTCAAGGCCTC CCACTGCGTTCCAAAGAATACTCGGCGAACACTCCAGGCTCTCATCGGCT ACAAATGTGCCCTCTGTAACGTTCCAATGTCTTCGTGTTCACCCCCCACC CCCACCCATTTTCTTCTTCCACCACACGACGCCCACGGTCCCGGGGTTGC TCGCATGCTTTTTGGGGGGTTGGCGTGCTAAAGGTGGTGGTGAACAGCGC GGGAGCGTATATCCGGCCGCTCGCGGGAATCTGCCTGGACGTGATGGAGG CGCTGGACATCCCGGTGTGCCTCAACCTGTACATCACCGCGGCTGGGCAG AAGACGTCCGCCCCTCCTCACACCGACAAGCAGGACGTGTTCGTAATGCA GACGCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17951:2452..3458+

>mRNA_Ecto-sp13_S_contig17951.5482.1 ID=mRNA_Ecto-sp13_S_contig17951.5482.1|Name=mRNA_Ecto-sp13_S_contig17951.5482.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=312bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17951:2452..3458+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCGGGAGAGGGACGTTCAGTCAGGGGTCTACGGGGTGGAGGATGGCGCC
GGTGTCGACGCCGAGGGGGAAGAGCTTCGAAGACGCCAAGCTGAGGTTCG
ACGACGTCAAGAACGCTTTGAAAGAGAAGAGTGGGACTGTGGTGGTGAAC
AGCGCGGGAGCGTATATCCGGCCGCTCGCGGGAATCTGCCTGGACGTGAT
GGAGGCGCTGGACATCCCGGTGTGCCTCAACCTGTACATCACCGCGGCTG
GGCAGAAGACGTCCGCCCCTCCTCACACCGACAAGCAGGACGTGTTCGTA
ATGCAGACGCAG
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