mRNA_Ecto-sp13_S_contig17944.5477.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17944.5477.1
Unique NamemRNA_Ecto-sp13_S_contig17944.5477.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig17944.5477.1 vs. uniprot
Match: D8LFV5_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFV5_ECTSI)

HSP 1 Score: 194 bits (492), Expect = 3.160e-62
Identity = 96/109 (88.07%), Postives = 100/109 (91.74%), Query Frame = 1
Query:    1 ISSGYFAGLLSSSFMAGRVISAYFWGIIADRCGRRPVVLFSLVSTGVLAVAFGFSTTFLWALACRFSLGLLNATTVIFPTLVSEICGKEHEVVGLGAVTGDSIACRRGT 327
            +SSGYFAGLLSSSFM GRVISAYFWGI+ADRCGRRPVVL SL STG LAVAFGFSTTFLWALACRF LGLLN  TVIFPTLVSEICGKEHEVVGLGAVT + +ACRRGT
Sbjct:    1 MSSGYFAGLLSSSFMFGRVISAYFWGIVADRCGRRPVVLLSLASTGGLAVAFGFSTTFLWALACRFLLGLLNGMTVIFPTLVSEICGKEHEVVGLGAVTSEPVACRRGT 109          
BLAST of mRNA_Ecto-sp13_S_contig17944.5477.1 vs. uniprot
Match: A0A6H5JZQ3_9PHAE (MFS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ3_9PHAE)

HSP 1 Score: 194 bits (492), Expect = 6.600e-58
Identity = 97/109 (88.99%), Postives = 100/109 (91.74%), Query Frame = 1
Query:    1 ISSGYFAGLLSSSFMAGRVISAYFWGIIADRCGRRPVVLFSLVSTGVLAVAFGFSTTFLWALACRFSLGLLNATTVIFPTLVSEICGKEHEVVGLGAVTGDSIACRRGT 327
            +SSGYFAGLLSSSFM GRVISAYFWGIIADRCGRRPVVL SL STG LAVAFGFSTTFLWALACRF LGLLN  TVIFP+LVSEICGKEHEVVGLGAVT + IACRRGT
Sbjct:    1 MSSGYFAGLLSSSFMVGRVISAYFWGIIADRCGRRPVVLLSLASTGGLAVAFGFSTTFLWALACRFLLGLLNGMTVIFPSLVSEICGKEHEVVGLGAVTSEPIACRRGT 109          
BLAST of mRNA_Ecto-sp13_S_contig17944.5477.1 vs. uniprot
Match: A0A6H5JCE3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCE3_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 1.060e-39
Identity = 69/82 (84.15%), Postives = 74/82 (90.24%), Query Frame = 1
Query:   79 IIADRCGRRPVVLFSLVSTGVLAVAFGFSTTFLWALACRFSLGLLNATTVIFPTLVSEICGKEHEVVGLGAVTGDSIACRRG 324
            +I DRCGRRPVVLFSL STGVLAVAFGFSTTFLW+LACRF LGLLN   VIFPTLVSEICGKEHEVVGLGA+T + +ACRRG
Sbjct:    1 MITDRCGRRPVVLFSLASTGVLAVAFGFSTTFLWSLACRFLLGLLNRMAVIFPTLVSEICGKEHEVVGLGAMTSEPVACRRG 82          
BLAST of mRNA_Ecto-sp13_S_contig17944.5477.1 vs. uniprot
Match: D8LRH9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRH9_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 1.940e-27
Identity = 55/97 (56.70%), Postives = 67/97 (69.07%), Query Frame = 1
Query:   10 GYFAGLLSSSFMAGRVISAYFWGIIADRCGRRPVVLFSLVSTGVLAVAFGFSTTFLWALACRFSLGLLNATTVIFPTLVSEICGKEHEVVGLGAVTG 300
            GY+AG +SS+FM GRV S+YFWG  AD  GR PV+   L S  VL++AFG ST+FLWAL CRF LG+LN    I   + SE+CGKEHE  G+  V G
Sbjct:   69 GYYAGYVSSAFMVGRVGSSYFWGRFADSHGRLPVIYAGLTSMVVLSIAFGLSTSFLWALGCRFLLGVLNGLLGISKAMTSEVCGKEHEATGMAYVLG 165          
BLAST of mRNA_Ecto-sp13_S_contig17944.5477.1 vs. uniprot
Match: A0A6H5KX19_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX19_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 1.140e-25
Identity = 55/99 (55.56%), Postives = 67/99 (67.68%), Query Frame = 1
Query:   10 GYFAGLLSSSFMAGRVISAYFWGIIADRCGRRPVVLFSLVSTGVLAVAFGFSTTFLWALACRFSLGLLNATTVIFPTLVSEICGKEHEVVGLGAVTGDS 306
            GY+AG L+S+FM GR  ++      ADR GR PVV   L S GVL++AFG ST F WAL CRF LG +NA   I   ++SEICGK+HE VG+G VTG S
Sbjct:  116 GYYAGCLASAFMVGRFATSXXXXXXADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTCRFLLGAMNALMGISKCMISEICGKQHETVGMGYVTGCS 214          
BLAST of mRNA_Ecto-sp13_S_contig17944.5477.1 vs. uniprot
Match: A0A6H5L4Q8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Q8_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 9.900e-25
Identity = 53/97 (54.64%), Postives = 63/97 (64.95%), Query Frame = 1
Query:   10 GYFAGLLSSSFMAGRVISAYFWGIIADRCGRRPVVLFSLVSTGVLAVAFGFSTTFLWALACRFSLGLLNATTVIFPTLVSEICGKEHEVVGLGAVTG 300
            GY+AG L+S+FM GR          ADR GR PVV   L S GVL++AFG ST F WAL CRF LG +N    I   ++SEICGK+HE VG+G VTG
Sbjct:   80 GYYAGYLASAFMVGRFXXXXXXXXXADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTCRFLLGAMNGLIAISKCMISEICGKQHEKVGMGYVTG 176          
BLAST of mRNA_Ecto-sp13_S_contig17944.5477.1 vs. uniprot
Match: D8LRH7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRH7_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 1.010e-24
Identity = 52/97 (53.61%), Postives = 63/97 (64.95%), Query Frame = 1
Query:   10 GYFAGLLSSSFMAGRVISAYFWGIIADRCGRRPVVLFSLVSTGVLAVAFGFSTTFLWALACRFSLGLLNATTVIFPTLVSEICGKEHEVVGLGAVTG 300
            GY+AG L+S+FM GR          ADR GR PVV   L S GVL++AFG ST F WAL CRF LG +N    I   ++SEICGK+HE VG+G +TG
Sbjct:   48 GYYAGYLASAFMVGRFXXXXXXXXXADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTCRFLLGAMNGLIAISKCMISEICGKQHETVGMGYITG 144          
BLAST of mRNA_Ecto-sp13_S_contig17944.5477.1 vs. uniprot
Match: A0A7R9UB92_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UB92_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 1.600e-22
Identity = 47/97 (48.45%), Postives = 65/97 (67.01%), Query Frame = 1
Query:   10 GYFAGLLSSSFMAGRVISAYFWGIIADRCGRRPVVLFSLVSTGVLAVAFGFSTTFLWALACRFSLGLLNATTVIFPTLVSEICGKEHEVVGLGAVTG 300
            GY+AG + ++FMAGR +S++FWGI ADR GR+PV+L    S  VL+V FG STTF  AL  RF +GL N       T+V+E+C ++ +   +G VTG
Sbjct:   69 GYYAGFVGAAFMAGRTVSSFFWGIYADRYGRKPVILIGCASIAVLSVLFGVSTTFSMALVTRFLIGLGNGIAGTSKTIVAELCSEDFQPRAMGFVTG 165          
BLAST of mRNA_Ecto-sp13_S_contig17944.5477.1 vs. uniprot
Match: A0A7J7N9H9_9MAGN (MFS domain-containing protein n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7N9H9_9MAGN)

HSP 1 Score: 99.8 bits (247), Expect = 3.880e-22
Identity = 48/96 (50.00%), Postives = 63/96 (65.62%), Query Frame = 1
Query:   10 GYFAGLLSSSFMAGRVISAYFWGIIADRCGRRPVVLFSLVSTGVLAVAFGFSTTFLWALACRFSLGLLNATTVIFPTLVSEICGKEHEVVGLGAVT 297
            GY+AG + SSFM GR +++YFWG+IADR GR+PVV+F L++  V    FG ST+F  A+A RF LG LN          SEIC  EH+ +GL  V+
Sbjct:   78 GYYAGFVGSSFMFGRALTSYFWGVIADRYGRKPVVIFGLITIVVFNTLFGLSTSFWMAIATRFLLGSLNGILGPIRAYASEICRDEHQAMGLSLVS 173          
BLAST of mRNA_Ecto-sp13_S_contig17944.5477.1 vs. uniprot
Match: A0A1D1ZE51_9ARAE (Putative peptide/nitrate transporter At3g43790 n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1ZE51_9ARAE)

HSP 1 Score: 95.5 bits (236), Expect = 5.600e-21
Identity = 42/96 (43.75%), Postives = 62/96 (64.58%), Query Frame = 1
Query:   10 GYFAGLLSSSFMAGRVISAYFWGIIADRCGRRPVVLFSLVSTGVLAVAFGFSTTFLWALACRFSLGLLNATTVIFPTLVSEICGKEHEVVGLGAVT 297
            GY+AG + SSFM GR +++ FWG++ADR GR+PV++F  +S  +    FG S++F  A+  RF LG LNA         SEIC +EH+ +G+  +T
Sbjct:   77 GYYAGYVGSSFMFGRALTSLFWGVVADRYGRKPVIVFGTISVIIFNTLFGLSSSFWMAILTRFLLGCLNAVFAPIKAYASEICRQEHQSIGMSVIT 172          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17944.5477.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFV5_ECTSI3.160e-6288.07MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JZQ3_9PHAE6.600e-5888.99MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JCE3_9PHAE1.060e-3984.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRH9_ECTSI1.940e-2756.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KX19_9PHAE1.140e-2555.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4Q8_9PHAE9.900e-2554.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRH7_ECTSI1.010e-2453.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7R9UB92_9STRA1.600e-2248.45Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7J7N9H9_9MAGN3.880e-2250.00MFS domain-containing protein n=1 Tax=Kingdonia un... [more]
A0A1D1ZE51_9ARAE5.600e-2143.75Putative peptide/nitrate transporter At3g43790 n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17944contigEcto-sp13_S_contig17944:170..1301 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score194.5
Seed ortholog evalue2.6e-47
Seed eggNOG ortholog2880.D8LFV5
Model size327
Hectar predicted targeting categorysignal anchor
Exons2
EggNOG free text desc.major facilitator superfamily
EggNOG OGsKOG2615@1,KOG2615@2759
Cds size327
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462928.4180536-CDS-Ecto-sp13_S_contig17944:169..3021681462928.4180536-CDS-Ecto-sp13_S_contig17944:169..302Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17944 170..302 -
1681462928.4301002-CDS-Ecto-sp13_S_contig17944:1107..13011681462928.4301002-CDS-Ecto-sp13_S_contig17944:1107..1301Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17944 1108..1301 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17944.5477.1prot_Ecto-sp13_S_contig17944.5477.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17944 170..1301 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17944.5477.1

>prot_Ecto-sp13_S_contig17944.5477.1 ID=prot_Ecto-sp13_S_contig17944.5477.1|Name=mRNA_Ecto-sp13_S_contig17944.5477.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=109bp
ISSGYFAGLLSSSFMAGRVISAYFWGIIADRCGRRPVVLFSLVSTGVLAV
AFGFSTTFLWALACRFSLGLLNATTVIFPTLVSEICGKEHEVVGLGAVTG
DSIACRRGT
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mRNA from alignment at Ecto-sp13_S_contig17944:170..1301-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17944.5477.1 ID=mRNA_Ecto-sp13_S_contig17944.5477.1|Name=mRNA_Ecto-sp13_S_contig17944.5477.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1132bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17944:170..1301- (Ectocarpus species13 EcNAP12_S_4_19m)
ATTTCTTCAGGGTACTTCGCTGGTCTGCTATCTTCCAGCTTCATGGCCGG TCGTGTGATCTCGGCATACTTCTGGGGGATCATTGCCGATCGGTGCGGCC GTCGTCCAGTTGTCTTGTTCTCGCTGGTATCTACGGGAGTGCTTGCCGTG GCCTTCGGGTTCTCTACAACGTTCTTGTGGGCCCTTGCGTGCAGGTAGGT TCACAAACCCTTGCTGGCCTCGATCTCGTGAACGTCCACCTGCAAAAGAG TGTTTGCGTAGTGCAAACATGAGCAGATCTCTTGCATCTTGAATGAACCA AAGATATTCGCTCAGCACGCTTCAGTACGTGTGATGAAAGCGGTCTGCTC TCTGTTTTTTTCGAAAAGAGTAGCGTGCACAAGAACGTTGTAGAAAGCCC GAAGGCCACGGCAAGCACTCCCGTAGATGCCAGCGAGAACAAGACGACTG GGCAACGGCCGCACCGATCGGCAATGATCCCCCAGAACTATGCCGAGATC ACACGACCGGCTAAGAAAAGTTGGAGCATAGTAGACCAGCGAAGTACCCT GAGTACTCTTGAGGAAGTTTCGGGAGATTCTGAACTCGAACACATTTGTA AGTGCCCGGCAACAGGTTCGCATAAAGATTCCTTCTTATGTAGGAGTACC TCTCCGTGACGAGAGGACCGACTCCATTCGTTTTACCTGGCCGTTCCAAG TCGCTGGTAGAATTGATGTTGATCGGCGTCCGTGCGCTGCAAACCACCAT GTTAGCAGGCTTTGTCCCTCTGGTCTGTCCAACAAATCTGTGTTGTAGAG CTTGAAGTGATGGTTCTGCAATTGCTAGACTGCCATTAGGTTCCAGCGAC ATGCAAGCTTTTCATCGCACACTGCTCGCGTTGTTCAATGCGAGTTGGTA GTCCACACGATGGATGTAGTGGTCGTTGAAGGCACGGAATCATCGACGAC TACTATGGTAGCGCCGGTGCATCGCTCACACGTGGCCACTTGTCTTCAGG TTTTCGTTGGGGCTGCTGAACGCGACGACGGTAATTTTTCCAACGCTCGT CTCGGAAATCTGCGGCAAGGAGCATGAAGTCGTCGGGTTGGGAGCAGTGA CAGGTGATTCTATCGCTTGTAGGCGTGGTACA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17944:170..1301-

>mRNA_Ecto-sp13_S_contig17944.5477.1 ID=mRNA_Ecto-sp13_S_contig17944.5477.1|Name=mRNA_Ecto-sp13_S_contig17944.5477.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=327bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17944:170..1301- (Ectocarpus species13 EcNAP12_S_4_19m)
ATTTCTTCAGGGTACTTCGCTGGTCTGCTATCTTCCAGCTTCATGGCCGG
TCGTGTGATCTCGGCATACTTCTGGGGGATCATTGCCGATCGGTGCGGCC
GTCGTCCAGTTGTCTTGTTCTCGCTGGTATCTACGGGAGTGCTTGCCGTG
GCCTTCGGGTTCTCTACAACGTTCTTGTGGGCCCTTGCGTGCAGGTTTTC
GTTGGGGCTGCTGAACGCGACGACGGTAATTTTTCCAACGCTCGTCTCGG
AAATCTGCGGCAAGGAGCATGAAGTCGTCGGGTTGGGAGCAGTGACAGGT
GATTCTATCGCTTGTAGGCGTGGTACA
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