mRNA_Ecto-sp13_S_contig17932.5472.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17932.5472.1
Unique NamemRNA_Ecto-sp13_S_contig17932.5472.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig17932.5472.1 vs. uniprot
Match: A0A6H5KY11_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KY11_9PHAE)

HSP 1 Score: 265 bits (677), Expect = 2.750e-84
Identity = 132/135 (97.78%), Postives = 135/135 (100.00%), Query Frame = 1
Query:    1 LGCPVIGLNDSGGARIQEGVDSLAGYADVFQRNVDASGSIPQLSLIMGACAGGAVYSPAMTDFIFMVKRSSYMFVTGPGVVKTVTQEEVTQEVLGGAQSHTTMSGVAHAAYNNDLEALRAARELYGFLPLSCKGE 405
            LGCPVIGLNDSGGARIQEGVDSLAGYADVFQRNVDASGSIPQLSLIMGACAGGAVYSPAMTDFIFMVKRSSYMFVTGPGVVKTVTQEEVTQEVLGGAQSHTT+SGVAHAAY+NDLEALRAARELYGFLPLSCKG+
Sbjct:  146 LGCPVIGLNDSGGARIQEGVDSLAGYADVFQRNVDASGSIPQLSLIMGACAGGAVYSPAMTDFIFMVKRSSYMFVTGPGVVKTVTQEEVTQEVLGGAQSHTTVSGVAHAAYDNDLEALRAARELYGFLPLSCKGD 280          
BLAST of mRNA_Ecto-sp13_S_contig17932.5472.1 vs. uniprot
Match: A0A812Z5R2_SYMMI (PccB protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812Z5R2_SYMMI)

HSP 1 Score: 219 bits (557), Expect = 1.180e-69
Identity = 106/131 (80.92%), Postives = 121/131 (92.37%), Query Frame = 1
Query:    1 LGCPVIGLNDSGGARIQEGVDSLAGYADVFQRNVDASGSIPQLSLIMGACAGGAVYSPAMTDFIFMVKRSSYMFVTGPGVVKTVTQEEVTQEVLGGAQSHTTMSGVAHAAYNNDLEALRAARELYGFLPLS 393
            +G PVIGLNDSGGARIQEGVDSLAGYADVFQRNVDASG IPQ+S+IMG CAGGAVYSPAMTDFIFMV+R+SYMFVTGP VVKTVT E+VTQE LGGA++HT++SGVAH A+ ND+EALRA R+LY +LPL+
Sbjct:   55 VGAPVIGLNDSGGARIQEGVDSLAGYADVFQRNVDASGVIPQISMIMGPCAGGAVYSPAMTDFIFMVQRTSYMFVTGPNVVKTVTMEDVTQEELGGAETHTSLSGVAHGAFANDVEALRALRQLYSYLPLN 185          
BLAST of mRNA_Ecto-sp13_S_contig17932.5472.1 vs. uniprot
Match: A0A482RZS8_9ARCH (CoA carboxyltransferase N-terminal domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RZS8_9ARCH)

HSP 1 Score: 216 bits (549), Expect = 1.390e-69
Identity = 108/132 (81.82%), Postives = 120/132 (90.91%), Query Frame = 1
Query:    4 GCPVIGLNDSGGARIQEGVDSLAGYADVFQRNVDASGSIPQLSLIMGACAGGAVYSPAMTDFIFMVKRSSYMFVTGPGVVKTVTQEEVTQEVLGGAQSHTTMSGVAHAAYNNDLEALRAARELYGFLPLSCK 399
            G PVIGLNDSGGARIQEGVDSLAGYADVF RNVDASG IPQLSL+MG CAGGAVYSPAMTDFIFMV+R+S+MFVTGP VVKTVT EEVTQEVLGGA +HT++SGVAHAA+ ND+ ALR AREL+ +LPL+ K
Sbjct:    8 GAPVIGLNDSGGARIQEGVDSLAGYADVFLRNVDASGVIPQLSLVMGPCAGGAVYSPAMTDFIFMVQRTSHMFVTGPNVVKTVTGEEVTQEVLGGADTHTSVSGVAHAAFQNDVLALRGARELFEYLPLNNK 139          
BLAST of mRNA_Ecto-sp13_S_contig17932.5472.1 vs. uniprot
Match: A0A482RCA6_9ARCH (CoA carboxyltransferase N-terminal domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RCA6_9ARCH)

HSP 1 Score: 214 bits (545), Expect = 2.880e-67
Identity = 103/134 (76.87%), Postives = 120/134 (89.55%), Query Frame = 1
Query:    1 LGCPVIGLNDSGGARIQEGVDSLAGYADVFQRNVDASGSIPQLSLIMGACAGGAVYSPAMTDFIFMVKRSSYMFVTGPGVVKTVTQEEVTQEVLGGAQSHTTMSGVAHAAYNNDLEALRAARELYGFLPLSCKG 402
            +G PVIGLNDSGGARIQEGVDSLAGYA+VFQRNVDASG +PQ+S+IMG CAGGAVYSPAMTDF FMV+ +SYMFVTGP VVKTVT+E+VTQE LGGA++HT+ SGVAH +++NDL+A+ A RE Y FLPLS KG
Sbjct:  167 VGVPVIGLNDSGGARIQEGVDSLAGYAEVFQRNVDASGYVPQISVIMGPCAGGAVYSPAMTDFTFMVRDTSYMFVTGPNVVKTVTREDVTQEELGGAKTHTSKSGVAHGSFDNDLDAIAALREFYNFLPLSAKG 300          
BLAST of mRNA_Ecto-sp13_S_contig17932.5472.1 vs. uniprot
Match: A0A7S0SX47_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SX47_9STRA)

HSP 1 Score: 210 bits (534), Expect = 1.330e-65
Identity = 102/133 (76.69%), Postives = 119/133 (89.47%), Query Frame = 1
Query:    1 LGCPVIGLNDSGGARIQEGVDSLAGYADVFQRNVDASGSIPQLSLIMGACAGGAVYSPAMTDFIFMVKRSSYMFVTGPGVVKTVTQEEVTQEVLGGAQSHTTMSGVAHAAYNNDLEALRAARELYGFLPLSCK 399
            +G PVIGLNDSGGARIQEG+DSL GYADVF +NV+ASG IPQ+S+IMG CAGGAVYSPAMTDFIFMVKRSSYMFVTGP VVKTVTQE+VTQE LGGA++HT++SGVAH A++ND+ AL   REL+ +LPL+ K
Sbjct:  126 VGAPVIGLNDSGGARIQEGIDSLGGYADVFLKNVNASGIIPQISVIMGPCAGGAVYSPAMTDFIFMVKRSSYMFVTGPSVVKTVTQEDVTQEELGGAETHTSLSGVAHGAFDNDIIALEKIRELFQYLPLNNK 258          
BLAST of mRNA_Ecto-sp13_S_contig17932.5472.1 vs. uniprot
Match: A0A836CAR6_9STRA (Propionyl-CoA carboxylase beta chain mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAR6_9STRA)

HSP 1 Score: 212 bits (540), Expect = 4.720e-64
Identity = 107/130 (82.31%), Postives = 116/130 (89.23%), Query Frame = 1
Query:    4 GCPVIGLNDSGGARIQEGVDSLAGYADVFQRNVDASGSIPQLSLIMGACAGGAVYSPAMTDFIFMVKRSSYMFVTGPGVVKTVTQEEVTQEVLGGAQSHTTMSGVAHAAYNNDLEALRAARELYGFLPLS 393
            G PVIGLNDSGGARIQEGVDSLAGYA+VFQRNVDASG IPQLSLIMG CAGGAVYSPA+TDFI MV+ SSYMFVTGP VVKTVTQE VTQE LGGA +H ++SGVAH A +NDL AL+AAREL+ FLPLS
Sbjct:  135 GAPVIGLNDSGGARIQEGVDSLAGYAEVFQRNVDASGLIPQLSLIMGPCAGGAVYSPALTDFIMMVRNSSYMFVTGPDVVKTVTQETVTQEALGGADTHCSVSGVAHVARDNDLAALKAARELFDFLPLS 264          
BLAST of mRNA_Ecto-sp13_S_contig17932.5472.1 vs. uniprot
Match: A0A7S2RD78_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RD78_9STRA)

HSP 1 Score: 210 bits (534), Expect = 5.130e-63
Identity = 102/131 (77.86%), Postives = 116/131 (88.55%), Query Frame = 1
Query:    1 LGCPVIGLNDSGGARIQEGVDSLAGYADVFQRNVDASGSIPQLSLIMGACAGGAVYSPAMTDFIFMVKRSSYMFVTGPGVVKTVTQEEVTQEVLGGAQSHTTMSGVAHAAYNNDLEALRAARELYGFLPLS 393
            +G PVIGLNDSGGARIQEG+DSLAGYADVFQ+NV ASG +PQ+SL+MG CAGGAVYSPAMTDFIFMV+R+SYMFVTGP VVKTVT EEVTQE LGGA +HT +SGVAH A+ ND++ALRA R L  +LPLS
Sbjct:  150 VGAPVIGLNDSGGARIQEGIDSLAGYADVFQQNVIASGVVPQISLVMGPCAGGAVYSPAMTDFIFMVRRTSYMFVTGPDVVKTVTNEEVTQEELGGADTHTALSGVAHGAFENDVDALRATRALLDYLPLS 280          
BLAST of mRNA_Ecto-sp13_S_contig17932.5472.1 vs. uniprot
Match: A0A0S7KDL7_9TELE (PCCB (Fragment) n=2 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7KDL7_9TELE)

HSP 1 Score: 199 bits (507), Expect = 8.670e-63
Identity = 97/131 (74.05%), Postives = 114/131 (87.02%), Query Frame = 1
Query:    1 LGCPVIGLNDSGGARIQEGVDSLAGYADVFQRNVDASGSIPQLSLIMGACAGGAVYSPAMTDFIFMVKRSSYMFVTGPGVVKTVTQEEVTQEVLGGAQSHTTMSGVAHAAYNNDLEALRAARELYGFLPLS 393
            +G PVIGLNDSGGARIQEGV+SLAGYAD+F RNV ASG +PQ+SLIMG CAGGAVYSPA+TDF FMVK +SY+F+TGP VVK+VT E+VTQE LGGA++HTT+SGVAH A+ ND+EAL   RE + FLPLS
Sbjct:   61 VGAPVIGLNDSGGARIQEGVESLAGYADIFLRNVLASGVVPQISLIMGPCAGGAVYSPALTDFTFMVKDTSYLFITGPDVVKSVTNEDVTQEELGGAKTHTTVSGVAHRAFENDVEALLNLREFFNFLPLS 191          
BLAST of mRNA_Ecto-sp13_S_contig17932.5472.1 vs. uniprot
Match: A0A192ZJC9_9EUKA (Propionyl-CoA carboxylase b-subunit n=1 Tax=Stygiella incarcerata TaxID=1712417 RepID=A0A192ZJC9_9EUKA)

HSP 1 Score: 209 bits (532), Expect = 9.940e-63
Identity = 102/135 (75.56%), Postives = 116/135 (85.93%), Query Frame = 1
Query:    1 LGCPVIGLNDSGGARIQEGVDSLAGYADVFQRNVDASGSIPQLSLIMGACAGGAVYSPAMTDFIFMVKRSSYMFVTGPGVVKTVTQEEVTQEVLGGAQSHTTMSGVAHAAYNNDLEALRAARELYGFLPLSCKGE 405
            +G PVIGLNDSGGARIQEGVDSLAGYA+VFQRNV  SG +PQ+SL+MG CAGGAVYSPA+TDF  MV+ +SY+F+TGP VVKTVT EEVTQE LGGAQ+HT  SGVAH AYNND+EAL+A REL G+LP SC  E
Sbjct:  149 VGAPVIGLNDSGGARIQEGVDSLAGYAEVFQRNVLTSGVVPQISLVMGPCAGGAVYSPALTDFTIMVRGTSYLFITGPDVVKTVTGEEVTQEQLGGAQTHTVKSGVAHMAYNNDIEALQATRELVGYLPSSCHVE 283          
BLAST of mRNA_Ecto-sp13_S_contig17932.5472.1 vs. uniprot
Match: A0A7S3LK18_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LK18_9STRA)

HSP 1 Score: 209 bits (532), Expect = 1.060e-62
Identity = 104/135 (77.04%), Postives = 119/135 (88.15%), Query Frame = 1
Query:    1 LGCPVIGLNDSGGARIQEGVDSLAGYADVFQRNVDASGSIPQLSLIMGACAGGAVYSPAMTDFIFMVKRSSYMFVTGPGVVKTVTQEEVTQEVLGGAQSHTTMSGVAHAAYNNDLEALRAARELYGFLPLSCKGE 405
            +G PVIGLNDSGGARIQEGVDSLAGYADVFQRNV+ASG IPQLS+IMG CAGGAVYSPA+TDFI MV+ +SYMFVTGP VVKTVT EEVTQE LGGA+SHT  SGV+H A++ND+EAL+  REL+ +LPLS + E
Sbjct:  152 VGAPVIGLNDSGGARIQEGVDSLAGYADVFQRNVEASGVIPQLSVIMGPCAGGAVYSPAITDFIMMVRDTSYMFVTGPEVVKTVTNEEVTQEELGGAKSHTQKSGVSHLAFDNDVEALKMTRELFDYLPLSNREE 286          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17932.5472.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KY11_9PHAE2.750e-8497.78Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A812Z5R2_SYMMI1.180e-6980.92PccB protein (Fragment) n=1 Tax=Symbiodinium micro... [more]
A0A482RZS8_9ARCH1.390e-6981.82CoA carboxyltransferase N-terminal domain-containi... [more]
A0A482RCA6_9ARCH2.880e-6776.87CoA carboxyltransferase N-terminal domain-containi... [more]
A0A7S0SX47_9STRA1.330e-6576.69Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
A0A836CAR6_9STRA4.720e-6482.31Propionyl-CoA carboxylase beta chain mitochondrial... [more]
A0A7S2RD78_9STRA5.130e-6377.86Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A0S7KDL7_9TELE8.670e-6374.05PCCB (Fragment) n=2 Tax=Poeciliopsis prolifica Tax... [more]
A0A192ZJC9_9EUKA9.940e-6375.56Propionyl-CoA carboxylase b-subunit n=1 Tax=Stygie... [more]
A0A7S3LK18_9STRA1.060e-6277.04Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17932contigEcto-sp13_S_contig17932:2499..3552 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score265.8
Seed ortholog evalue1.1e-68
Seed eggNOG ortholog2880.D8LQL0
Model size408
KEGG rclassRC00097,RC00367,RC00609,RC00942
KEGG koko:K01966,ko:K01969
KEGG ReactionR01859,R04138
KEGG Pathwayko00280,ko00630,ko00640,ko01100,ko01120,ko01130,ko01200,map00280,map00630,map00640,map01100,map01120,map01130,map01200
KEGG ModuleM00036,M00373,M00741
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.CoA carboxylase activity
EggNOG OGsCOG4799@1,KOG0540@2759
EC2.1.3.15,6.4.1.3,6.4.1.4
Cds size408
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462928.2001915-CDS-Ecto-sp13_S_contig17932:2498..26771681462928.2001915-CDS-Ecto-sp13_S_contig17932:2498..2677Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17932 2499..2677 -
1681462928.2116127-CDS-Ecto-sp13_S_contig17932:3323..35521681462928.2116127-CDS-Ecto-sp13_S_contig17932:3323..3552Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17932 3324..3552 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17932.5472.1prot_Ecto-sp13_S_contig17932.5472.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17932 2499..3552 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17932.5472.1

>prot_Ecto-sp13_S_contig17932.5472.1 ID=prot_Ecto-sp13_S_contig17932.5472.1|Name=mRNA_Ecto-sp13_S_contig17932.5472.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=136bp
LGCPVIGLNDSGGARIQEGVDSLAGYADVFQRNVDASGSIPQLSLIMGAC
AGGAVYSPAMTDFIFMVKRSSYMFVTGPGVVKTVTQEEVTQEVLGGAQSH
TTMSGVAHAAYNNDLEALRAARELYGFLPLSCKGE*
back to top

mRNA from alignment at Ecto-sp13_S_contig17932:2499..3552-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17932.5472.1 ID=mRNA_Ecto-sp13_S_contig17932.5472.1|Name=mRNA_Ecto-sp13_S_contig17932.5472.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1054bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17932:2499..3552- (Ectocarpus species13 EcNAP12_S_4_19m)
CTGGGGTGCCCCGTGATTGGGCTGAATGACTCGGGGGGGGCGCGCATCCA AGAAGGGGTTGATTCGCTCGCCGGATACGCGGACGTTTTTCAACGCAATG TGGATGCTTCGGGGTCGATTCCGCAGCTGTCCTTGATCATGGGGGCATGT GCAGGAGGAGCGGTGTATTCTCCCGCTATGACGGACTTCATATTCATGGT GAAGCGGTCTTCCTACATGTTCGTTACAGGTATGTACATGTCGGATTCTT GGTGGTTTTGACTTCGTGAAGAGGTTGGGGTGCAATGCTTCCGTTTATTC TCTTTCGCTGAAGTTAGCGGTCTGTTGTCGCCATGGTGTACCATGGTATG TCTGCATGCGGTGCTGCCTTGGTTTGGTTTGGAATCGTAGTTGAAAGCAT GTGTGGCCTGTGTAACTGTTTGCTTCCATCTAGAGTACCTGCTCTTTTCG TGCGTAGCGCCGGAGCGGCGGTGCATCTTCTGGCAATGGCGAGTTCCGTG TCCATGGCGGCAGGATTTATATTTTTTGTTGCGCACACTGTAGCAGTGCC TGTTGCGATCTCTCTATGTCAATTAGATAATAAAATCTTGGAGTTGATTC TGTCGAAAGTGGAAGCGGGTAGCTGCTCGGGATCGTTGCTAGATTACTGG AATATTTTGCTCTGTTACGGCATTCTCTCCACAAATCGTGCTTCTTGTTT TATTGGATGTTGCTTGTTGAAGTTCACTTCTTAGTGTTGTGTTACGTCTG TCGAAGGGAACGTATGTTAGCACAGCGTATATATCACTCGTTGTTTCCGA TACCGTCGTTGATATCCAAACGTAGTATCGGTTCTCTTCTTTATTTTGTA CTGTCGATACCCTTGATGTTGTCAGGCCCAGGCGTGGTGAAGACGGTCAC CCAGGAGGAAGTGACGCAGGAGGTCCTAGGAGGGGCCCAATCCCACACCA CCATGTCCGGGGTAGCGCACGCGGCCTATAACAACGACTTGGAGGCGCTG CGGGCGGCGAGAGAGCTGTACGGCTTCCTTCCTTTGAGCTGCAAAGGCGA GTAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17932:2499..3552-

>mRNA_Ecto-sp13_S_contig17932.5472.1 ID=mRNA_Ecto-sp13_S_contig17932.5472.1|Name=mRNA_Ecto-sp13_S_contig17932.5472.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=408bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17932:2499..3552- (Ectocarpus species13 EcNAP12_S_4_19m)
CTGGGGTGCCCCGTGATTGGGCTGAATGACTCGGGGGGGGCGCGCATCCA
AGAAGGGGTTGATTCGCTCGCCGGATACGCGGACGTTTTTCAACGCAATG
TGGATGCTTCGGGGTCGATTCCGCAGCTGTCCTTGATCATGGGGGCATGT
GCAGGAGGAGCGGTGTATTCTCCCGCTATGACGGACTTCATATTCATGGT
GAAGCGGTCTTCCTACATGTTCGTTACAGGCCCAGGCGTGGTGAAGACGG
TCACCCAGGAGGAAGTGACGCAGGAGGTCCTAGGAGGGGCCCAATCCCAC
ACCACCATGTCCGGGGTAGCGCACGCGGCCTATAACAACGACTTGGAGGC
GCTGCGGGCGGCGAGAGAGCTGTACGGCTTCCTTCCTTTGAGCTGCAAAG
GCGAGTAG
back to top